Published in Methods Enzymol on January 01, 1989
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A (2004) 10.35
Relationship between internucleotide linkage geometry and the stability of RNA. RNA (1999) 5.01
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol (2008) 4.40
Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization. RNA (2004) 2.86
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing. Nat Methods (2010) 2.71
Predicting oligonucleotide affinity to nucleic acid targets. RNA (1999) 2.67
Identification of molecular contacts between the U1 A small nuclear ribonucleoprotein and U1 RNA. EMBO J (1991) 2.61
A stress-responsive RNA switch regulates VEGFA expression. Nature (2008) 2.58
SHAPE-directed RNA secondary structure prediction. Methods (2010) 2.40
Nop2p is required for pre-rRNA processing and 60S ribosome subunit synthesis in yeast. Mol Cell Biol (1997) 2.02
Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA. EMBO J (1995) 1.99
Improved RNA secondary structure prediction by maximizing expected pair accuracy. RNA (2009) 1.78
Mutant CAG repeats of Huntingtin transcript fold into hairpins, form nuclear foci and are targets for RNA interference. Nucleic Acids Res (2011) 1.77
CCA addition by tRNA nucleotidyltransferase: polymerization without translocation? EMBO J (1998) 1.71
Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination. EMBO J (2002) 1.71
The eukaryotic mRNA decapping protein Dcp1 interacts physically and functionally with the eIF4F translation initiation complex. EMBO J (2000) 1.70
Characterization of the frameshift stimulatory signal controlling a programmed -1 ribosomal frameshift in the human immunodeficiency virus type 1. Nucleic Acids Res (2002) 1.70
Evidence that genomic and antigenomic RNA self-cleaving elements from hepatitis delta virus have similar secondary structures. Nucleic Acids Res (1991) 1.63
RNA secondary structure prediction. Curr Protoc Nucleic Acid Chem (2007) 1.40
Bipartite function of a small RNA hairpin in transcription antitermination in bacteriophage lambda. Proc Natl Acad Sci U S A (1995) 1.38
Characterization of an essential RNA secondary structure in the 3' untranslated region of the murine coronavirus genome. J Virol (2000) 1.35
The subset of mouse B1 (Alu-equivalent) sequences expressed as small processed cytoplasmic transcripts. Nucleic Acids Res (1991) 1.35
Formation of a functional hepatitis B virus replication initiation complex involves a major structural alteration in the RNA template. Mol Cell Biol (1998) 1.30
Probing RNA structure with chemical reagents and enzymes. Curr Protoc Nucleic Acid Chem (2001) 1.29
Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymes. RNA (2001) 1.29
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction. Nucleic Acids Res (2012) 1.27
RNA structure is a critical determinant of poly(A) site recognition by cleavage and polyadenylation specificity factor. Mol Cell Biol (1996) 1.23
Editing domains of Trypanosoma brucei mitochondrial RNAs identified by secondary structure. Mol Cell Biol (1995) 1.21
Molecular analysis of a synthetic tetracycline-binding riboswitch. RNA (2005) 1.20
Sequence- and structure-specific determinants in the interaction between the RNA encapsidation signal and reverse transcriptase of avian hepatitis B viruses. J Virol (1997) 1.19
Alternative tertiary structure attenuates self-cleavage of the ribozyme in the satellite RNA of barley yellow dwarf virus. Nucleic Acids Res (1991) 1.16
Common structural features of the Ro RNP associated hY1 and hY5 RNAs. Nucleic Acids Res (1994) 1.14
Structure-infectivity analysis of the human rhinovirus genomic RNA 3' non-coding region. Nucleic Acids Res (1996) 1.13
Mutagenic analysis of the 3' cis-acting elements of the rubella virus genome. J Virol (1999) 1.12
Facilitating RNA structure prediction with microarrays. Biochemistry (2006) 1.11
Secondary structure prediction and structure-specific sequence analysis of single-stranded DNA. Nucleic Acids Res (2001) 1.06
RNA heptamers that direct RNA cleavage by mammalian tRNA 3' processing endoribonuclease. Nucleic Acids Res (1998) 1.06
RNA as a boiling-resistant anionic polymer material to build robust structures with defined shape and stoichiometry. ACS Nano (2014) 1.05
Functionally significant secondary structure of the simian virus 40 late polyadenylation signal. Mol Cell Biol (2000) 1.05
Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA. J Virol (1999) 1.04
RNA secondary structure analysis using RNAstructure. Curr Protoc Bioinformatics (2006) 1.04
An RNA aptamer to the xanthine/guanine base with a distinctive mode of purine recognition. Nucleic Acids Res (1998) 1.03
Programmable folding of fusion RNA in vivo and in vitro driven by pRNA 3WJ motif of phi29 DNA packaging motor. Nucleic Acids Res (2013) 1.02
Cell proteins bind specifically to West Nile virus minus-strand 3' stem-loop RNA. J Virol (1996) 1.02
Primary sequence and secondary structure motifs in spleen necrosis virus RU5 confer translational utilization of unspliced human immunodeficiency virus type 1 reporter RNA. J Virol (2003) 1.01
A plant viral coat protein RNA binding consensus sequence contains a crucial arginine. EMBO J (1996) 0.95
The centrality of RNA for engineering gene expression. Biotechnol J (2013) 0.94
5' cis elements direct nodavirus RNA1 recruitment to mitochondrial sites of replication complex formation. J Virol (2009) 0.94
Modular engineering of a Group I intron ribozyme. Nucleic Acids Res (2002) 0.90
Retroviral constitutive transport element evolved from cellular TAP(NXF1)-binding sequences. J Virol (2001) 0.88
Inhibition of gene expression in human cells using RNase P-derived ribozymes and external guide sequences. Biochim Biophys Acta (2007) 0.87
Functional interchangeability of the structurally similar tetranucleotide loops GAAA and UUCG in fission yeast signal recognition particle RNA. Proc Natl Acad Sci U S A (1993) 0.86
In vitro capping and transcription of rhabdoviruses. Methods (2012) 0.85
Probing the hammerhead ribozyme structure with ribonucleases. Nucleic Acids Res (1994) 0.85
Trypanosoma brucei ATPase subunit 6 mRNA bound to gA6-14 forms a conserved three-helical structure. RNA (2008) 0.84
Potent Inhibition of HIV-1 Reverse Transcriptase and Replication by Nonpseudoknot, "UCAA-motif" RNA Aptamers. Mol Ther Nucleic Acids (2013) 0.84
Tackling structures of long noncoding RNAs. Int J Mol Sci (2013) 0.82
Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes. Biochemistry (2011) 0.82
Capping of vesicular stomatitis virus pre-mRNA is required for accurate selection of transcription stop-start sites and virus propagation. Nucleic Acids Res (2014) 0.81
Viral coat protein peptides with limited sequence homology bind similar domains of alfalfa mosaic virus and tobacco streak virus RNAs. J Virol (1998) 0.81
Insertions within epsilon affect synthesis of minus-strand DNA before the template switch for duck hepatitis B virus. J Virol (1997) 0.80
A small ribozyme with dual-site kinase activity. Nucleic Acids Res (2012) 0.80
Using the RNAstructure Software Package to Predict Conserved RNA Structures. Curr Protoc Bioinformatics (2014) 0.78
Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq). Methods (2016) 0.77
Messenger RNAs bearing tRNA-like features exemplified by interferon alfa 5 mRNA. Cell Mol Life Sci (2015) 0.77
RNA self-cleavage activated by ultraviolet light-induced oxidation. Nucleic Acids Res (2011) 0.77
Monitoring equilibrium changes in RNA structure by 'peroxidative' and 'oxidative' hydroxyl radical footprinting. J Vis Exp (2011) 0.77
RNase YI* and RNA structure studies. Nucleic Acids Res (1997) 0.77
An RNA fragment consisting of the P7 and P9.0 stems and the 3'-terminal guanosine of the Tetrahymena group I intron. Nucleic Acids Res (1996) 0.77
Structure Prediction: New Insights into Decrypting Long Noncoding RNAs. Int J Mol Sci (2016) 0.77
The RNA Structure of cis-acting Translational Elements of the Chloroplast psbC mRNA in Chlamydomonas reinhardtii. Front Plant Sci (2016) 0.75
The Conservation and Function of RNA Secondary Structure in Plants. Annu Rev Plant Biol (2016) 0.75
Transcription and processing of intervening sequences in yeast tRNA genes. Cell (1978) 5.07
Splicing of yeast tRNA precursors: a two-stage reaction. Cell (1979) 4.15
Splicing of yeast tRNA precursors: structure of the reaction intermediates. Cell (1979) 3.56
Physical activity and all-cause mortality: an updated meta-analysis with different intensity categories. Int J Sports Med (2009) 3.20
Transfer RNA splicing in Saccharomyces cerevisiae. Secondary and tertiary structures of the substrates. J Biol Chem (1985) 1.72
Transfer RNA splicing in Saccharomyces cerevisiae: defining the substrates. Nucleic Acids Res (1984) 1.69
Treatment of non-ulcer dyspepsia: a meta-analysis of placebo-controlled prospective studies. Scand J Gastroenterol (2001) 1.49
A refined method for the meta-analysis of controlled clinical trials with binary outcome. Stat Med (2001) 1.33
On tests of the overall treatment effect in meta-analysis with normally distributed responses. Stat Med (2001) 1.27
Splicing of a yeast proline tRNA containing a novel suppressor mutation in the anticodon stem. J Mol Biol (1986) 1.12
Frameshift suppressor mutations outside the anticodon in yeast proline tRNAs containing an intervening sequence. Mol Cell Biol (1985) 1.07
Does physical activity increase life expectancy? A review of the literature. J Aging Res (2012) 1.02
Accelerated bone maturation syndrome of the Weaver type. Eur J Pediatr (1981) 0.99
Introduction of plasma indomethacin level monitoring and evaluation of an effective threshold level in very low birth weight infants with symptomatic patent ductus arteriosus. Eur J Pediatr (1983) 0.91
Mutations in the anticodon stem affect removal of introns from pre-tRNA in Saccharomyces cerevisiae. Mol Cell Biol (1989) 0.86
[Physical training for neurological and mental diseases]. Nervenarzt (2014) 0.84
Total digestion of silicate containing matrices (plants, soil, sludges) using a pressure ashing device with PFA-vessels. Anal Bioanal Chem (1996) 0.81
Biologic availability of digoxin tablets. JAMA (1973) 0.81
Child abuse. Its relationship to birthweight, apgar score, and developmental testing. Am J Dis Child (1978) 0.80
Preparation of yeast transfer RNA precursors in vivo. Methods Enzymol (1989) 0.78
Aortic flow velocity curves in the diagnosis and the followup of symptomatic patent ductus arteriosus in preterm infants during therapeutic interventions. Pediatr Pharmacol (New York) (1983) 0.78
Counteracting the negative effects of rapeseed and rapeseed press cake in pig diets. Br J Nutr (1997) 0.77
Influence of dioctyl sodium sulfosuccinate on the absorption of tetracycline. Biopharm Drug Dispos (1986) 0.76
Interference with measurements of certain drugs in plasma by a plasticizer in vacutainer tubes. Clin Chem (1982) 0.76
[Serum levels od D-thyroxine in euthyroidism and hypothyroidism (author's transl)]. Acta Med Austriaca (1981) 0.75
[Therapy of salmonella enteritis with special reference to lactulose (author's transl)]. Infection (1980) 0.75
Separation and determination of thyroid hormones in blood serum. Anal Chem (1974) 0.75
Stable-isotope methodology in the bioavailability study of 17 alpha-methyltestosterone using gas chromatography-mass spectrometry. J Pharm Sci (1986) 0.75
A simple concentration procedure for trace metals for x-ray fluorescence and atomic absorption spectrometry. Anal Chim Acta (1975) 0.75
Interference in plasma level measurements of certain drugs due to a plasticizer in Vacutainers. J Pharm Sci (1982) 0.75
Sequential testing as an efficient screening method for interferences in routine analysis as applied to atomic-absorption spectrometry with flame and graphite furnace atomization. Talanta (1979) 0.75
Preliminary observations on dissolution and bioavailability of triamterene-hydrochlorothiazide combination products. Biopharm Drug Dispos (1984) 0.75
Determination of traces of rare earth elements in geological samples. Talanta (1993) 0.75
[Blood triiodothyronine level in iodavide thyroid gland]. Wien Z Inn Med (1973) 0.75
X-ray fluorescence determination of trace selenium in organic and biological matrices. Anal Chem (1980) 0.75
[Introduction of observational technics in medical-sociological research]. Z Arztl Fortbild (Jena) (1973) 0.75
[Short forms of a short psychopathological intelligence test (author's transl)]. MMW Munch Med Wochenschr (1976) 0.75
Investigation of microwave assisted drying of samples and evaporation of aqueous solutions in trace element analysis. Fresenius J Anal Chem (2000) 0.75
[Rapid determination of iodoamino acid iodine in blood serum]. Clin Chim Acta (1973) 0.75
[Concepts and advantages of short tests in psychopathology]. Psychiatr Clin (Basel) (1975) 0.75
High-temperature, microwave-assisted UV digestion: a promising sample preparation technique for trace element analysis. Anal Chem (2001) 0.75
[Investigations concerning the mechanism of contrast damage. The significance lipophilia (author's transl)]. Rofo (1980) 0.75
[A new technic for the automatic determination of PBI]. Clin Chim Acta (1970) 0.75
Automatic digital system for quantitative kinetic analysis--application to catalytic determination of thyroid hormones. Anal Chem (1974) 0.75
Stereospecific determination of D-thyroxin and L-thyroxin in serum. Klin Wochenschr (1981) 0.75
A sensitive atomic-absorption spectrometric method for the determination of tin with atomization from impregnated graphite surfaces. Talanta (1979) 0.75
Identification and quantification of 6 beta-hydroxydexamethasone as a major urinary metabolite of dexamethasone in man. Steroids (1987) 0.75
Determination of halides by microwave induced plasma and stabilized capacitive plasma atomic emission spectrometry after on-line continuous halogen generation. Talanta (1997) 0.75
Pressurized wet digestion in open vessels. Anal Bioanal Chem (2003) 0.75
Determination of dexamethasone in human plasma and urine by electron-impact mass spectrometry. J Chromatogr (1985) 0.75
Drug assay interference caused by plasticizer in Vacutainers. Am J Hosp Pharm (1982) 0.75
[A re-analysis of the Blue Mountain eye study on the risk of cataracts from inhaled corticosteroids. A contribution to objectifying the discussion]. Pneumologie (1999) 0.75
[Serum concentration of triiodothyronine in autonomous thyroid gland adenoma]. Acta Med Austriaca (1975) 0.75
Resolution of uncertainty of a four-stage sequential extraction procedure using analysis of variance. Anal Bioanal Chem (2002) 0.75