Published in Curr Protoc Nucleic Acid Chem on May 01, 2001
Genome-wide measurement of RNA secondary structure in yeast. Nature (2010) 5.74
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo. Nature (2013) 3.00
Structural architecture of the human long non-coding RNA, steroid receptor RNA activator. Nucleic Acids Res (2012) 1.58
Robust and generic RNA modeling using inferred constraints: a structure for the hepatitis C virus IRES pseudoknot domain. Biochemistry (2010) 1.13
Facilitating RNA structure prediction with microarrays. Biochemistry (2006) 1.11
Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function. Nucleic Acids Res (2008) 1.05
Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases. Nucleic Acids Res (2010) 1.04
High-throughput characterization of protein-RNA interactions. Brief Funct Genomics (2014) 0.95
Computational analysis of RNA structures with chemical probing data. Methods (2015) 0.93
The 3' splice site of influenza A segment 7 mRNA can exist in two conformations: a pseudoknot and a hairpin. PLoS One (2012) 0.92
Comparisons between chemical mapping and binding to isoenergetic oligonucleotide microarrays reveal unexpected patterns of binding to the Bacillus subtilis RNase P RNA specificity domain. Biochemistry (2010) 0.92
Progress and challenges for chemical probing of RNA structure inside living cells. Nat Chem Biol (2015) 0.85
Binding and cleavage of unstructured RNA by nuclear RNase P. RNA (2011) 0.85
Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes. Biochemistry (2011) 0.82
Tackling structures of long noncoding RNAs. Int J Mol Sci (2013) 0.82
Secondary structure of a conserved domain in an intron of influenza A M1 mRNA. Biochemistry (2014) 0.82
Current perspectives on RNA secondary structure probing. Biochem Soc Trans (2014) 0.80
Probing dimensionality beyond the linear sequence of mRNA. Curr Genet (2015) 0.78
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE. Nat Protoc (2016) 0.78
Understanding the Functions of Long Non-Coding RNAs through Their Higher-Order Structures. Int J Mol Sci (2016) 0.75
Probing-directed identification of novel structured RNAs. RNA Biol (2016) 0.75
Interpreting Reverse Transcriptase Termination and Mutation Events for Greater Insight into the Chemical Probing of RNA. Biochemistry (2017) 0.75
On finding all suboptimal foldings of an RNA molecule. Science (1989) 20.36
Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol (1989) 10.82
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proc Natl Acad Sci U S A (1994) 8.06
Specific labeling of 3' termini of RNA with T4 RNA ligase. Methods Enzymol (1980) 7.55
Chemical probes for higher-order structure in RNA. Proc Natl Acad Sci U S A (1980) 5.38
Finding the most significant common sequence and structure motifs in a set of RNA sequences. Nucleic Acids Res (1997) 4.04
Enzymatic approaches to probing of RNA secondary and tertiary structure. Methods Enzymol (1989) 2.80
The combination of symbolic and numerical computation for three-dimensional modeling of RNA. Science (1991) 2.66
A guide for probing native small nuclear RNA and ribonucleoprotein structures. Methods Enzymol (1989) 2.15
Computer modeling and display of RNA secondary and tertiary structures. Methods Enzymol (1990) 1.07
Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes. Cell (1980) 10.87
Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev (1998) 2.97
Nucleolar localization of early tRNA processing. Genes Dev (1998) 2.78
Nucleolytic processing of a tRNAArg-tRNAAsp dimeric precursor by a homologous component from Saccharomyces cerevisiae. J Biol Chem (1985) 2.52
HeLa cell RNA polymerase III transcription factors. Functional characterization of a fraction identified by its activity in a second template rescue assay. J Biol Chem (1984) 2.15
Streptavidin aptamers: affinity tags for the study of RNAs and ribonucleoproteins. RNA (2001) 2.11
tRNA genes as transcriptional repressor elements. Mol Cell Biol (1994) 2.10
Characterization of RPR1, an essential gene encoding the RNA component of Saccharomyces cerevisiae nuclear RNase P. Mol Cell Biol (1991) 1.82
Comparative structural analysis of nuclear RNase P RNAs from yeast. J Biol Chem (1993) 1.71
Expression of small, therapeutic RNAs in human cell nuclei. Gene Ther (1997) 1.71
An RNase P RNA subunit mutation affects ribosomal RNA processing. Nucleic Acids Res (1996) 1.67
A CBF5 mutation that disrupts nucleolar localization of early tRNA biosynthesis in yeast also suppresses tRNA gene-mediated transcriptional silencing. Proc Natl Acad Sci U S A (2000) 1.62
Copper-induced binding of cellular factors to yeast metallothionein upstream activation sequences. Proc Natl Acad Sci U S A (1989) 1.56
5' processing of tRNA precursors can Be modulated by the human La antigen phosphoprotein. Mol Cell Biol (1998) 1.49
Partial characterization of an RNA component that copurifies with Saccharomyces cerevisiae RNase P. Mol Cell Biol (1989) 1.48
Direct identification of small sequence changes in chromosomal DNA. Gene (1986) 1.46
Genomic footprinting of a yeast tRNA gene reveals stable complexes over the 5'-flanking region. Mol Cell Biol (1989) 1.45
Expression of RNase P RNA in Saccharomyces cerevisiae is controlled by an unusual RNA polymerase III promoter. Proc Natl Acad Sci U S A (1991) 1.43
Structure-sensitive RNA footprinting of yeast nuclear ribonuclease P. Biochemistry (1994) 1.39
Comparison of tRNA gene transcription complexes formed in vitro and in nuclei. Mol Cell Biol (1987) 1.37
An essential protein-binding domain of nuclear RNase P RNA. RNA (2001) 1.28
Nuclear pre-tRNA terminal structure and RNase P recognition. RNA (1997) 1.17
ACE1 transcription factor produced in Escherichia coli binds multiple regions within yeast metallothionein upstream activation sequences. Mol Cell Biol (1990) 1.16
Sephadex-binding RNA ligands: rapid affinity purification of RNA from complex RNA mixtures. Nucleic Acids Res (2001) 1.12
Effects of 5' leader and 3' trailer structures on pre-tRNA processing by nuclear RNase P. Biochemistry (2000) 1.09
Replacement of the Saccharomyces cerevisiae RPR1 gene with heterologous RNase P RNA genes. Nucleic Acids Res (1994) 1.09
Mutational analysis of Saccharomyces cerevisiae nuclear RNase P: randomization of universally conserved positions in the RNA subunit. RNA (1996) 1.08
Direct sequence and footprint analysis of yeast DNA by primer extension. Methods Enzymol (1991) 1.08
Yeast expression vectors using RNA polymerase III promoters. Gene (1994) 1.08
Eukaryotic ribonuclease P: increased complexity to cope with the nuclear pre-tRNA pathway. J Cell Physiol (2001) 1.02
Evidence for an RNA-based catalytic mechanism in eukaryotic nuclear ribonuclease P. RNA (2000) 1.01
DNA ligands that bind tightly and selectively to cellobiose. Proc Natl Acad Sci U S A (1998) 1.00
Yeast extracts for transfer RNA gene transcription and processing. Methods Enzymol (1990) 0.99
Characterization of two active site mutations of thioredoxin reductase from Escherichia coli. J Biol Chem (1989) 0.98
Gal4 protein binding is required but not sufficient for derepression and induction of GAL2 expression. J Biol Chem (1993) 0.95
A conserved RNA motif involved in divalent cation utilization by nuclear RNase P. RNA (1996) 0.93
Homologous in vitro transcription of linear DNA fragments containing the tRNAArg-tRNAAsp gene pair from Saccharomyces cerevisiae. DNA (1984) 0.89
Multiple forms of DNA-dependent RNA polymerases in Xenopus laevis. Rapid purification and structural and immunological properties. J Biol Chem (1983) 0.88
Eukaryotic nuclear RNase P: structures and functions. Prog Nucleic Acid Res Mol Biol (1996) 0.88
Protein-DNA interactions in vivo--examining genes in Saccharomyces cerevisiae and Drosophila melanogaster by chromatin footprinting. Methods Cell Biol (1991) 0.87
Potent inhibition of human immunodeficiency virus type 1 (HIV-1) gene expression and virus production by an HIV-2 tat activation-response RNA decoy. J Virol (1999) 0.85
Effects of phosphorothioate modifications on precursor tRNA processing by eukaryotic RNase P enzymes. J Mol Biol (2000) 0.85
Initiation of rrn transcription in chloroplasts of Euglena gracilis bacillaris. Curr Genet (1988) 0.81
Saccharomyces cerevisiae nuclear ribonuclease P: structure and function. Methods Enzymol (2001) 0.80
Structural analysis of the P10/11-P12 RNA domain of yeast RNase P RNA and its interaction with magnesium. Biochemistry (1998) 0.78
An active domain of the nuclear RNase P RNA. Nucleic Acids Symp Ser (1997) 0.77
Synthesis of small RNA transcripts with discrete 5' and 3' ends. Biotechniques (1996) 0.77
Binding of yeast TFIIIC to tRNA gene bipartite internal promoters: analysis of physical effects on the intervening DNA. Biochem Biophys Res Commun (1991) 0.75
[Problem areas in nursing. 1]. Krankenpflege (Frankf) (1983) 0.75
[Problem areas in nursing. 2]. Krankenpflege (Frankf) (1983) 0.75
Analysis of conserved positions in nuclear RNase P RNA. Nucleic Acids Symp Ser (1995) 0.75