Why YRNAs? About Versatile RNAs and Their Functions.

PubWeight™: 0.84‹?›

🔗 View Article (PMC 4030889)

Published in Biomolecules on February 08, 2013

Authors

Marcel Köhn1, Nikolaos Pazaitis2, Stefan Hüttelmaier3

Author Affiliations

1: Martin-Luther-University Halle-Wittenberg, Institute of Molecular Medicine, Section Molecular Cell Biology, ZAMED, Heinrich-Damerow-Str.1, D-6120 Halle, Germany. marcel.koehn@medizin.uni-halle.de.
2: Martin-Luther-University Halle-Wittenberg, Institute of Molecular Medicine, Section Molecular Cell Biology, ZAMED, Heinrich-Damerow-Str.1, D-6120 Halle, Germany. pazaitis@gmx.de.
3: Martin-Luther-University Halle-Wittenberg, Institute of Molecular Medicine, Section Molecular Cell Biology, ZAMED, Heinrich-Damerow-Str.1, D-6120 Halle, Germany. stefan.huettelmaier@medizin.uni-halle.de.

Articles cited by this

T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol (2000) 57.88

The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet (2010) 15.87

Molecular mechanisms of long noncoding RNAs. Mol Cell (2011) 11.44

The Vienna RNA websuite. Nucleic Acids Res (2008) 9.02

Two novel classes of small ribonucleoproteins detected by antibodies associated with lupus erythematosus. Science (1981) 6.34

VARNA: Interactive drawing and editing of the RNA secondary structure. Bioinformatics (2009) 5.66

Purified lupus antigen La recognizes an oligouridylate stretch common to the 3' termini of RNA polymerase III transcripts. Cell (1984) 4.64

Ro small cytoplasmic ribonucleoproteins are a subclass of La ribonucleoproteins: further characterization of the Ro and La small ribonucleoproteins from uninfected mammalian cells. Mol Cell Biol (1981) 4.41

The Ro small cytoplasmic ribonucleoproteins: identification of the antigenic protein and its binding site on the Ro RNAs. Proc Natl Acad Sci U S A (1984) 3.51

Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments. Nucleic Acids Res (2003) 3.35

Interaction between VA RNA and the lupus antigen La: formation of a ribonucleoprotein particle in vitro. Proc Natl Acad Sci U S A (1982) 2.83

Paraspeckles: nuclear bodies built on long noncoding RNA. J Cell Biol (2009) 2.72

Exportin-5-mediated nuclear export of eukaryotic elongation factor 1A and tRNA. EMBO J (2002) 2.56

High-molecular-mass APOBEC3G complexes restrict Alu retrotransposition. Proc Natl Acad Sci U S A (2006) 2.54

A perinucleolar compartment contains several RNA polymerase III transcripts as well as the polypyrimidine tract-binding protein, hnRNP I. J Cell Biol (1995) 2.53

Exportin-5 mediates nuclear export of minihelix-containing RNAs. J Biol Chem (2002) 2.48

Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast. EMBO J (2000) 2.44

Structural insights into RNA quality control: the Ro autoantigen binds misfolded RNAs via its central cavity. Cell (2005) 2.40

Genes for two small cytoplasmic Ro RNAs are adjacent and appear to be single-copy in the human genome. Cell (1983) 2.40

A high-resolution structure of the pre-microRNA nuclear export machinery. Science (2009) 2.25

Splicing of a rare class of introns by the U12-dependent spliceosome. Biol Chem (2005) 2.20

Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. PLoS One (2010) 2.12

A possible role for the 60-kD Ro autoantigen in a discard pathway for defective 5S rRNA precursors. Genes Dev (1994) 2.00

La antigen recognizes and binds to the 3'-oligouridylate tail of a small RNA. Mol Cell Biol (1984) 1.97

7SL RNA mediates virion packaging of the antiviral cytidine deaminase APOBEC3G. J Virol (2007) 1.91

Molecular composition of IMP1 ribonucleoprotein granules. Mol Cell Proteomics (2007) 1.80

Analysis of protein--RNA interactions within Ro ribonucleoprotein complexes. Nucleic Acids Res (1991) 1.76

Insulin-like growth factor 2 mRNA-binding proteins (IGF2BPs): post-transcriptional drivers of cancer progression? Cell Mol Life Sci (2012) 1.68

Cellular stresses induce the nuclear accumulation of importin alpha and cause a conventional nuclear import block. J Cell Biol (2004) 1.46

Anti-Ro/SSA and La/SSB antibodies. Autoimmunity (2005) 1.43

Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. Genes Dev (2000) 1.38

Comparison of cellular ribonucleoprotein complexes associated with the APOBEC3F and APOBEC3G antiviral proteins. J Virol (2008) 1.37

7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription. Wiley Interdiscip Rev RNA (2011) 1.34

The Ro autoantigen binds misfolded U2 small nuclear RNAs and assists mammalian cell survival after UV irradiation. Curr Biol (2003) 1.32

Functional requirement of noncoding Y RNAs for human chromosomal DNA replication. Mol Cell Biol (2006) 1.31

A lupus-like syndrome develops in mice lacking the Ro 60-kDa protein, a major lupus autoantigen. Proc Natl Acad Sci U S A (2003) 1.31

RNA polymerase III transcripts and the PTB protein are essential for the integrity of the perinucleolar compartment. Mol Biol Cell (2003) 1.30

Binding of the 60-kDa Ro autoantigen to Y RNAs: evidence for recognition in the major groove of a conserved helix. RNA (1998) 1.29

Discovery of microRNAs and other small RNAs in solid tumors. Nucleic Acids Res (2010) 1.28

A misfolded form of 5S rRNA is complexed with the Ro and La autoantigens. RNA (1996) 1.27

Human Y5 RNA specializes a Ro ribonucleoprotein for 5S ribosomal RNA quality control. Genes Dev (2007) 1.27

The levels of the RoRNP-associated Y RNA are dependent upon the presence of ROP-1, the Caenorhabditis elegans Ro60 protein. Genetics (1999) 1.26

The subcellular distribution of an RNA quality control protein, the Ro autoantigen, is regulated by noncoding Y RNA binding. Mol Biol Cell (2008) 1.26

Ro-associated Y RNAs in metazoans: evolution and diversification. Mol Biol Evol (2007) 1.24

Noncoding human Y RNAs are overexpressed in tumours and required for cell proliferation. Br J Cancer (2008) 1.21

The interactions with Ro60 and La differentially affect nuclear export of hY1 RNA. RNA (1996) 1.21

Ro RNP associated Y RNAs are highly conserved among mammals. Biochim Biophys Acta (1993) 1.19

An ortholog of the Ro autoantigen functions in 23S rRNA maturation in D. radiodurans. Genes Dev (2007) 1.17

Analysis of the intracellular localization and assembly of Ro ribonucleoprotein particles by microinjection into Xenopus laevis oocytes. J Cell Biol (1994) 1.16

Nucleolin associates with a subset of the human Ro ribonucleoprotein complexes. J Mol Biol (2002) 1.16

Common structural features of the Ro RNP associated hY1 and hY5 RNAs. Nucleic Acids Res (1994) 1.14

Y3 is the most conserved small RNA component of Ro ribonucleoprotein complexes in vertebrate species. Gene (1995) 1.12

Rapid nucleolytic degradation of the small cytoplasmic Y RNAs during apoptosis. J Biol Chem (1999) 1.10

The heterogeneous nuclear ribonucleoproteins I and K interact with a subset of the ro ribonucleoprotein-associated Y RNAs in vitro and in vivo. J Biol Chem (2001) 1.09

Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway. FEBS Lett (2012) 1.04

Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs. Nucleic Acids Res (2005) 1.03

Evolution of the vertebrate Y RNA cluster. Theory Biosci (2007) 1.02

Analysis of the molecular composition of Ro ribonucleoprotein complexes. Identification of novel Y RNA-binding proteins. Eur J Biochem (2000) 1.02

Emerging roles for the Ro 60-kDa autoantigen in noncoding RNA metabolism. Wiley Interdiscip Rev RNA (2011) 1.02

Dynamic interaction of Y RNAs with chromatin and initiation proteins during human DNA replication. J Cell Sci (2011) 1.01

Identification of a novel cis-acting RNA element involved in nuclear export of hY RNAs. RNA (2001) 1.01

Packaging of host mY RNAs by murine leukemia virus may occur early in Y RNA biogenesis. J Virol (2009) 1.01

Human La is found at RNA polymerase III-transcribed genes in vivo. Proc Natl Acad Sci U S A (2005) 1.01

Structured non-coding RNAs and the RNP Renaissance. Curr Opin Chem Biol (2008) 1.01

Are the Ro RNP-associated Y RNAs concealing microRNAs? Y RNA-derived miRNAs may be involved in autoimmunity. Bioessays (2011) 0.99

Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis. Nucleic Acids Res (1999) 0.99

Interaction cloning and characterization of RoBPI, a novel protein binding to human Ro ribonucleoproteins. RNA (2000) 0.99

Y RNA functions at the initiation step of mammalian chromosomal DNA replication. J Cell Sci (2009) 0.96

Nuclear export of 5S rRNA-containing ribonucleoprotein complexes requires CRM1 and the RanGTPase cycle. Eur J Cell Biol (2002) 0.95

Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. Nucleic Acids Res (2000) 0.95

The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA. Nucleic Acids Res (2007) 0.95

The perinucleolar compartment. J Cell Biochem (2009) 0.92

Heterogeneity of human Ro ribonucleoproteins (RNPS): nuclear retention of Ro RNPS containing the human hY5 RNA in human and mouse cells. Clin Exp Immunol (2001) 0.91

Near-infrared (NIR) dye-labeled RNAs identify binding of ZBP1 to the noncoding Y3-RNA. RNA (2010) 0.91

The ultrastructural localization of 60-kDa Ro protein and human cytoplasmic RNAs: association with novel electron-dense bodies. Proc Natl Acad Sci U S A (1997) 0.91

A conserved motif of vertebrate Y RNAs essential for chromosomal DNA replication. RNA (2009) 0.90

Cloning and expression of mouse 60 kDa ribonucleoprotein SS-A/Ro. Mol Biol Rep (1996) 0.90

The zipcode-binding protein ZBP1 influences the subcellular location of the Ro 60-kDa autoantigen and the noncoding Y3 RNA. RNA (2011) 0.88

The midblastula transition defines the onset of Y RNA-dependent DNA replication in Xenopus laevis. Mol Cell Biol (2011) 0.88

Ribonucleoprotein particles containing non-coding Y RNAs, Ro60, La and nucleolin are not required for Y RNA function in DNA replication. PLoS One (2010) 0.87

Ro's role in RNA reconnaissance. Cell (2005) 0.82