Gene Family Analysis of the Arabidopsis NF-YA Transcription Factors Reveals Opposing Abscisic Acid Responses During Seed Germination.

PubWeight™: 0.81‹?›

🔗 View Article (PMID 25190903)

Published in Plant Mol Biol Report on January 01, 2014

Authors

Chamindika L Siriwardana1, Roderick W Kumimoto1, Daniel S Jones1, Ben F Holt1

Author Affiliations

1: Department of Microbiology and Plant Biology, University of Oklahoma, 770 Van Vleet Oval, GLCH, Room 43, Norman, OK 73019 USA.

Articles cited by this

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97

Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J (1998) 97.93

NIH Image to ImageJ: 25 years of image analysis. Nat Methods (2012) 84.41

Prediction of plant microRNA targets. Cell (2002) 19.20

Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10

The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res (2001) 11.93

Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (2009) 10.21

An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS One (2007) 9.60

Gateway-compatible vectors for plant functional genomics and proteomics. Plant J (2006) 8.95

Regulators of PP2C phosphatase activity function as abscisic acid sensors. Science (2009) 8.84

Seed Germination and Dormancy. Plant Cell (1997) 7.79

Duplication of CaMV 35S Promoter Sequences Creates a Strong Enhancer for Plant Genes. Science (1987) 6.00

Arabidopsis LEAFY COTYLEDON1 is sufficient to induce embryo development in vegetative cells. Cell (1998) 4.95

ABI1 protein phosphatase 2C is a negative regulator of abscisic acid signaling. Plant Cell (1999) 4.46

Structural mechanism of abscisic acid binding and signaling by dimeric PYR1. Science (2009) 4.41

Activation and repression of transcription by auxin-response factors. Proc Natl Acad Sci U S A (1999) 4.21

In vitro reconstitution of an abscisic acid signalling pathway. Nature (2009) 4.18

Networks of WRKY transcription factors in defense signaling. Curr Opin Plant Biol (2007) 3.89

A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature (2009) 3.63

The ABI1 and ABI2 protein phosphatases 2C act in a negative feedback regulatory loop of the abscisic acid signalling pathway. Plant J (2001) 3.57

Real-time quantitative RT-PCR: design, calculations, and statistics. Plant Cell (2009) 3.37

Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling. Plant Cell (2002) 3.36

Structural basis of abscisic acid signalling. Nature (2009) 3.29

Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1. Proc Natl Acad Sci U S A (2006) 3.28

Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad Sci U S A (2009) 3.28

CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. Plant Cell (2006) 3.23

The expression of a rab-related gene, rab18, is induced by abscisic acid during the cold acclimation process of Arabidopsis thaliana (L.) Heynh. Plant Mol Biol (1992) 3.20

Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development (2005) 3.14

The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell (2008) 3.14

The abscisic acid receptor PYR1 in complex with abscisic acid. Nature (2009) 3.12

Arabidopsis mutant deficient in 3 abscisic acid-activated protein kinases reveals critical roles in growth, reproduction, and stress. Proc Natl Acad Sci U S A (2009) 3.01

Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres. Proc Natl Acad Sci U S A (2007) 2.74

LEAFY COTYLEDON1 Is an Essential Regulator of Late Embryogenesis and Cotyledon Identity in Arabidopsis. Plant Cell (1994) 2.74

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation. Plant J (2009) 2.73

Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy. Plant Cell Physiol (2009) 2.60

Gain-of-function and loss-of-function phenotypes of the protein phosphatase 2C HAB1 reveal its role as a negative regulator of abscisic acid signalling. Plant J (2004) 2.57

Identifying essential genes in Arabidopsis thaliana. Trends Plant Sci (2008) 2.42

MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula. Genes Dev (2006) 2.41

CYP707A1 and CYP707A2, which encode abscisic acid 8'-hydroxylases, are indispensable for proper control of seed dormancy and germination in Arabidopsis. Plant Physiol (2006) 2.40

The HAP2 subunit of yeast CCAAT transcriptional activator contains adjacent domains for subunit association and DNA recognition: model for the HAP2/3/4 complex. Genes Dev (1990) 2.37

Towards a systematic validation of references in real-time rt-PCR. Plant Cell (2008) 2.37

LEAFY COTYLEDON1-LIKE defines a class of regulators essential for embryo development. Plant Cell (2003) 2.36

Protein phosphatases 2C regulate the activation of the Snf1-related kinase OST1 by abscisic acid in Arabidopsis. Plant Cell (2009) 2.32

Three SnRK2 protein kinases are the main positive regulators of abscisic acid signaling in response to water stress in Arabidopsis. Plant Cell Physiol (2009) 2.06

The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y. J Biol Chem (2002) 2.03

Triple loss of function of protein phosphatases type 2C leads to partial constitutive response to endogenous abscisic acid. Plant Physiol (2009) 2.02

ABF2, an ABRE-binding bZIP factor, is an essential component of glucose signaling and its overexpression affects multiple stress tolerance. Plant J (2004) 1.95

Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy. Plant J (2006) 1.93

bZIP28 and NF-Y transcription factors are activated by ER stress and assemble into a transcriptional complex to regulate stress response genes in Arabidopsis. Plant Cell (2010) 1.92

The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA. Plant J (2006) 1.88

Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity. Plant Physiol (2005) 1.73

Mutations in yeast HAP2/HAP3 define a hybrid CCAAT box binding domain. EMBO J (1993) 1.72

Arabidopsis PYR/PYL/RCAR receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid. Plant Cell (2012) 1.67

Arabidopsis LEAFY COTYLEDON1 represents a functionally specialized subunit of the CCAAT binding transcription factor. Proc Natl Acad Sci U S A (2003) 1.60

Regulation of novel members of the Arabidopsis thaliana CCAAT-binding nuclear factor Y subunits. Gene (2002) 1.58

The GCR1, GPA1, PRN1, NF-Y signal chain mediates both blue light and abscisic acid responses in Arabidopsis. Plant Physiol (2007) 1.50

NF-Y and the transcriptional activation of CCAAT promoters. Crit Rev Biochem Mol Biol (2011) 1.49

Three classes of mutations in the A subunit of the CCAAT-binding factor CBF delineate functional domains involved in the three-step assembly of the CBF-DNA complex. Mol Cell Biol (1996) 1.49

Three different polypeptides are necessary for DNA binding of the mammalian heteromeric CCAAT binding factor. J Biol Chem (1992) 1.47

Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors. Plant J (2009) 1.45

Redundant and distinct functions of the ABA response loci ABA-INSENSITIVE(ABI)5 and ABRE-BINDING FACTOR (ABF)3. Plant Mol Biol (2005) 1.45

The promiscuous life of plant NUCLEAR FACTOR Y transcription factors. Plant Cell (2012) 1.43

Regulation of the CCAAT-Binding NF-Y subunits in Arabidopsis thaliana. Gene (2001) 1.42

Tissue-specific expression patterns of Arabidopsis NF-Y transcription factors suggest potential for extensive combinatorial complexity. Plant Physiol (2008) 1.41

NF-YC3, NF-YC4 and NF-YC9 are required for CONSTANS-mediated, photoperiod-dependent flowering in Arabidopsis thaliana. Plant J (2010) 1.36

Sequence-specific transcription factor NF-Y displays histone-like DNA binding and H2B-like ubiquitination. Cell (2013) 1.33

The Nuclear Factor Y subunits NF-YB2 and NF-YB3 play additive roles in the promotion of flowering by inductive long-day photoperiods in Arabidopsis. Planta (2008) 1.32

Uncoupling the effects of abscisic acid on plant growth and water relations. Analysis of sto1/nced3, an abscisic acid-deficient but salt stress-tolerant mutant in Arabidopsis. Plant Physiol (2004) 1.29

CCAAT-box binding transcription factors in plants: Y so many? Trends Plant Sci (2012) 1.28

Genome-wide identification and expression analysis of the NF-Y family of transcription factors in Triticum aestivum. Plant Mol Biol (2007) 1.27

Subunit interaction in the CCAAT-binding heteromeric complex is mediated by a very short alpha-helix in HAP2. Proc Natl Acad Sci U S A (1994) 1.21

Functional and transcriptome analysis reveals an acclimatization strategy for abiotic stress tolerance mediated by Arabidopsis NF-YA family members. PLoS One (2012) 1.19

Identification, characterization and interaction of HAP family genes in rice. Mol Genet Genomics (2008) 1.16

A putative CCAAT-binding transcription factor is a regulator of flowering timing in Arabidopsis. Plant Physiol (2007) 1.15

Subunits of the heterotrimeric transcription factor NF-Y are imported into the nucleus by distinct pathways involving importin beta and importin 13. Mol Cell Biol (2005) 1.15

Trans-regulation of the expression of the transcription factor MtHAP2-1 by a uORF controls root nodule development. Genes Dev (2008) 1.15

Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana. Plant J (2012) 1.14

The assembly of the CAAT-box binding complex at a photosynthesis gene promoter is regulated by light, cytokinin, and the stage of the plastids. J Biol Chem (1999) 1.11

Cell cycle regulation of NF-YC nuclear localization. Cell Cycle (2004) 1.09

GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress. Plant Mol Biol (2013) 1.08

Posttranslational regulation of NF-YA modulates NF-Y transcriptional activity. Mol Biol Cell (2008) 1.06

AtHAP3b plays a crucial role in the regulation of flowering time in Arabidopsis during osmotic stress. J Biochem Mol Biol (2007) 1.05

Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members. Plant J (2012) 1.04

Identification and characterization of NF-Y transcription factor families in the monocot model plant Brachypodium distachyon. PLoS One (2011) 1.03

A C subunit of the plant nuclear factor NF-Y required for rhizobial infection and nodule development affects partner selection in the common bean-Rhizobium etli symbiosis. Plant Cell (2010) 1.02

Arabidopsis transcription factor genes NF-YA1, 5, 6, and 9 play redundant roles in male gametogenesis, embryogenesis, and seed development. Mol Plant (2012) 0.99

NUCLEAR FACTOR Y transcription factors have both opposing and additive roles in ABA-mediated seed germination. PLoS One (2013) 0.87

TaNF-YC11, one of the light-upregulated NF-YC members in Triticum aestivum, is co-regulated with photosynthesis-related genes. Funct Integr Genomics (2010) 0.86

Rapid isolation of Arabidopsis thaliana developing embryos. Biotechniques (2003) 0.86

NFYA1 is involved in regulation of postgermination growth arrest under salt stress in Arabidopsis. PLoS One (2013) 0.85

Over-expression of HAP3b enhances primary root elongation in Arabidopsis. Plant Physiol Biochem (2011) 0.83

ptr-MIR169 is a posttranscriptional repressor of PtrHAP2 during vegetative bud dormancy period of aspen (Populus tremuloides) trees. Biochem Biophys Res Commun (2013) 0.77