The nuclear exosome is active and important during budding yeast meiosis.

PubWeight™: 0.78‹?›

🔗 View Article (PMC 4161446)

Published in PLoS One on September 11, 2014

Authors

Stephen Frenk1, David Oxley2, Jonathan Houseley1

Author Affiliations

1: Epigenetics Programme, The Babraham Institute, Cambridge, United Kingdom.
2: Proteomics Group, The Babraham Institute, Cambridge, United Kingdom.

Articles cited by this

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12

Bidirectional promoters generate pervasive transcription in yeast. Nature (2009) 9.29

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases. Cell (1997) 8.94

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell (2005) 8.55

The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex. EMBO J (1998) 7.83

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell (2005) 7.37

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature (2004) 6.83

RNA exosome depletion reveals transcription upstream of active human promoters. Science (2008) 6.80

Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J (1999) 5.68

A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol (2005) 5.43

Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Cell (2007) 5.13

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature (2009) 4.96

Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. Genes Dev (2004) 4.61

Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Mol Cell Biol (2000) 4.57

A nuclear cap binding protein complex involved in pre-mRNA splicing. Cell (1994) 4.56

Identification of a regulated pathway for nuclear pre-mRNA turnover. Cell (2000) 4.38

A cap-binding protein complex mediating U snRNA export. Nature (1995) 3.89

Quality control of mRNA 3'-end processing is linked to the nuclear exosome. Nature (2001) 3.69

Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A (2006) 3.49

Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation. J Biol Chem (1998) 3.45

Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol Cell (2006) 2.95

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance. Mol Cell (2006) 2.91

Isolation of COM1, a new gene required to complete meiotic double-strand break-induced recombination in Saccharomyces cerevisiae. Genetics (1997) 2.81

A general method for identifying recessive diploid-specific mutations in Saccharomyces cerevisiae, its application to the isolation of mutants blocked at intermediate stages of meiotic prophase and characterization of a new gene SAE2. Genetics (1997) 2.72

Mapping meiotic single-strand DNA reveals a new landscape of DNA double-strand breaks in Saccharomyces cerevisiae. PLoS Biol (2007) 2.71

Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA. Mol Cell Biol (2000) 2.71

Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. Mol Cell (2005) 2.68

Selective elimination of messenger RNA prevents an incidence of untimely meiosis. Nature (2006) 2.64

Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell (2007) 2.58

S. pombe mei2+ encodes an RNA-binding protein essential for premeiotic DNA synthesis and meiosis I, which cooperates with a novel RNA species meiRNA. Cell (1994) 2.57

A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p. Mol Cell Biol (2000) 2.56

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts. Mol Cell (2006) 2.51

Degradation of ribosomal RNA precursors by the exosome. Nucleic Acids Res (2000) 2.47

Meiosis I is established through division-specific translational control of a cyclin. Cell (2008) 2.06

Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs. Mol Cell (2002) 2.05

Yeast Trf5p is a nuclear poly(A) polymerase. EMBO Rep (2006) 1.97

Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control. EMBO J (2007) 1.92

Mitotic chromosome condensation in the rDNA requires TRF4 and DNA topoisomerase I in Saccharomyces cerevisiae. Genes Dev (1996) 1.91

Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs. Mol Cell Biol (2003) 1.73

Defects in the mRNA export factors Rat7p, Gle1p, Mex67p, and Rat8p cause hyperadenylation during 3'-end formation of nascent transcripts. RNA (2001) 1.71

The human cap-binding complex is functionally connected to the nuclear RNA exosome. Nat Struct Mol Biol (2013) 1.67

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae. Mol Cell (2008) 1.63

Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae. Mol Cell Biol (2003) 1.61

Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells. EMBO J (2010) 1.56

Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II. J Cell Sci (2004) 1.51

Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants. EMBO J (2007) 1.51

Global role for polyadenylation-assisted nuclear RNA degradation in posttranscriptional gene silencing. Mol Cell Biol (2007) 1.43

A novel family of TRF (DNA topoisomerase I-related function) genes required for proper nuclear segregation. Nucleic Acids Res (1996) 1.41

A nuclear surveillance pathway for mRNAs with defective polyadenylation. Mol Cell Biol (2005) 1.39

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6. Proc Natl Acad Sci U S A (2010) 1.39

The interaction between cap-binding complex and RNA export factor is required for intronless mRNA export. J Biol Chem (2007) 1.38

Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast. J Biol Chem (2010) 1.37

The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA. Nucleic Acids Res (1999) 1.35

Isolation of mutants of Saccharomyces cerevisiae requiring DNA topoisomerase I. Genetics (1995) 1.34

Distinct roles of non-canonical poly(A) polymerases in RNA metabolism. PLoS Genet (2009) 1.33

Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast. Mol Cell Biol (2008) 1.33

Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes. Open Biol (2012) 1.29

Mutations in Saccharomyces cerevisiae that block meiotic prophase chromosome metabolism and confer cell cycle arrest at pachytene identify two new meiosis-specific genes SAE1 and SAE3. Genetics (1997) 1.25

Red1 promotes the elimination of meiosis-specific mRNAs in vegetatively growing fission yeast. EMBO J (2011) 1.22

Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species. Transcription (2011) 1.14

A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts. Mol Cell Biol (2008) 1.12

Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. RNA (2014) 1.00

The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription. Mol Cell Biol (2012) 0.96

A developmentally regulated translational control pathway establishes the meiotic chromosome segregation pattern. Genes Dev (2013) 0.94

The C-terminal region of the exosome-associated protein Rrp47 is specifically required for box C/D small nucleolar RNA 3'-maturation. J Biol Chem (2010) 0.92

Cap completion and C-terminal repeat domain kinase recruitment underlie the initiation-elongation transition of RNA polymerase II. Mol Cell Biol (2013) 0.91

A Screen for Germination Mutants in Saccharomyces cerevisiae. G3 (Bethesda) (2011) 0.91

Ribosome activity and degradation in meiotic cells of Saccharomyces cerevisiae. Mol Gen Genet (1978) 0.89

The nuclear cap-binding complex interacts with the U4/U6·U5 tri-snRNP and promotes spliceosome assembly in mammalian cells. RNA (2013) 0.88

In vitro synthesis of RNA by Xenopus spermatogenic cells I. Evidence for polyadenylated and non-polyadenylated RNA synthesis in different cell populations. J Exp Zool (1979) 0.87

The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo. Nucleic Acids Res (2010) 0.87

Ribosomes, membranes and organelles during meiosis in angiosperms. Philos Trans R Soc Lond B Biol Sci (1977) 0.85

Endogenous RNA interference is driven by copy number. Elife (2014) 0.85

Meiotic long non-coding meiRNA accumulates as a dot at its genetic locus facilitated by Mmi1 and plays as a decoy to lure Mmi1. Open Biol (2014) 0.84

Disruption and functional analysis of six ORFs on chromosome XV: YOL117w, YOL115w ( TRF4), YOL114c, YOL112w ( MSB4), YOL111c and YOL072w. Yeast (1999) 0.82

Timing of ribosome synthesis during ascosporogenesis of yeast cells: evidence for early function of haploid daughter genomes. J Bacteriol (1981) 0.81

Resolution of budding yeast chromosomes using pulsed-field gel electrophoresis. Methods Mol Biol (2013) 0.78