Published in BMC Bioinformatics on October 21, 2014
A cross disciplinary study of link decay and the effectiveness of mitigation techniques. BMC Bioinformatics (2013) 1.18
Topic modeling for cluster analysis of large biological and medical datasets. BMC Bioinformatics (2014) 0.95
Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population. BMC Bioinformatics (2014) 0.88
Improving protein fold recognition by random forest. BMC Bioinformatics (2014) 0.86
Competitive molecular docking approach for predicting estrogen receptor subtype α agonists and antagonists. BMC Bioinformatics (2014) 0.84
Revealing the inherent heterogeneity of human malignancies by variant consensus strategies coupled with cancer clonal analysis. BMC Bioinformatics (2014) 0.83
Divergence of protein-coding capacity and regulation in the Bacillus cereus sensu lato group. BMC Bioinformatics (2014) 0.82
Trends in the production of scientific data analysis resources. BMC Bioinformatics (2014) 0.82
Predicting genome-scale Arabidopsis-Pseudomonas syringae interactome using domain and interolog-based approaches. BMC Bioinformatics (2014) 0.82
LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches. BMC Bioinformatics (2014) 0.82
XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry. BMC Bioinformatics (2014) 0.80
Haystack, a web-based tool for metabolomics research. BMC Bioinformatics (2014) 0.80
Quality evaluation of extracted ion chromatograms and chromatographic peaks in liquid chromatography/mass spectrometry-based metabolomics data. BMC Bioinformatics (2014) 0.79
Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response. BMC Bioinformatics (2014) 0.79
SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data. BMC Bioinformatics (2014) 0.78
Leveraging the new with the old: providing a framework for the integration of historic microarray studies with next generation sequencing. BMC Bioinformatics (2014) 0.78
SLDR: a computational technique to identify novel genetic regulatory relationships. BMC Bioinformatics (2014) 0.78
Déjà vu--a study of duplicate citations in Medline. Bioinformatics (2007) 2.31
eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications. Nucleic Acids Res (2007) 2.10
Ska3 is required for spindle checkpoint silencing and the maintenance of chromosome cohesion in mitosis. Curr Biol (2009) 1.90
Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjögren's syndrome. Nat Genet (2013) 1.79
No-boundary thinking in bioinformatics research. BioData Min (2013) 1.76
Genome-wide DNA methylation patterns in CD4+ T cells from patients with systemic lupus erythematosus. Epigenetics (2011) 1.71
Genome-wide DNA methylation study suggests epigenetic accessibility and transcriptional poising of interferon-regulated genes in naïve CD4+ T cells from lupus patients. J Autoimmun (2013) 1.65
Functional characterization of the MECP2/IRAK1 lupus risk haplotype in human T cells and a human MECP2 transgenic mouse. J Autoimmun (2013) 1.65
MelanomaDB: A Web Tool for Integrative Analysis of Melanoma Genomic Information to Identify Disease-Associated Molecular Pathways. Front Oncol (2013) 1.53
Fluorescence-enhanced optical imaging in large tissue volumes using a gain-modulated ICCD camera. Phys Med Biol (2003) 1.47
Variants within MECP2, a key transcription regulator, are associated with increased susceptibility to lupus and differential gene expression in patients with systemic lupus erythematosus. Arthritis Rheum (2009) 1.43
Abnormal expression of differentiation related proteins and proteoglycan core proteins in the urothelium of patients with interstitial cystitis. J Urol (2007) 1.32
Genome-level analysis of genetic regulation of liver gene expression networks. Hepatology (2007) 1.29
Evolving research trends in bioinformatics. Brief Bioinform (2006) 1.27
Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families. New Phytol (2009) 1.21
Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks. BMC Bioinformatics (2007) 1.15
Olfactomedin 4 defines a subset of human neutrophils. J Leukoc Biol (2011) 1.15
Novel protein ADTRP regulates TFPI expression and function in human endothelial cells in normal conditions and in response to androgen. Blood (2011) 1.12
Databases, data tombs and dust in the wind. Bioinformatics (2008) 1.12
Large-scale directional relationship extraction and resolution. BMC Bioinformatics (2008) 1.07
Cross-hybridization on PCR-spotted microarrays. IEEE Eng Med Biol Mag (2002) 1.01
A novel gene network inference algorithm using predictive minimum description length approach. BMC Syst Biol (2010) 1.00
Genomic inventory and transcriptional analysis of Medicago truncatula transporters. Plant Physiol (2009) 0.99
Bioinformatics leads charge by publishing more Internet addresses in abstracts than any other journal. Bioinformatics (2004) 0.99
Detection of single and multiple targets in tissue phantoms with fluorescence-enhanced optical imaging: feasibility study. Radiology (2005) 0.99
Clustering microarray-derived gene lists through implicit literature relationships. Bioinformatics (2007) 0.98
GenomeRunner: automating genome exploration. Bioinformatics (2011) 0.97
Elevated AKR1C3 expression promotes prostate cancer cell survival and prostate cell-mediated endothelial cell tube formation: implications for prostate cancer progression. BMC Cancer (2010) 0.97
Aging exacerbates hypertension-induced cerebral microhemorrhages in mice: role of resveratrol treatment in vasoprotection. Aging Cell (2015) 0.97
Predicting gene ontology from a global meta-analysis of 1-color microarray experiments. BMC Bioinformatics (2011) 0.96
Bioimage informatics: a new category in Bioinformatics. Bioinformatics (2012) 0.96
Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study. Arthritis Rheumatol (2015) 0.95
Gender differences in inflammatory proteins and pathways in seasonal allergic rhinitis. Cytokine (2008) 0.94
Question answering systems in biology and medicine--the time is now. Bioinformatics (2011) 0.93
Fine mapping and conditional analysis identify a new mutation in the autoimmunity susceptibility gene BLK that leads to reduced half-life of the BLK protein. Ann Rheum Dis (2012) 0.92
ARROGANT: an application to manipulate large gene collections. Bioinformatics (2002) 0.92
Examining smoking-induced differential gene expression changes in buccal mucosa. BMC Med Genomics (2010) 0.92
ELTD1, a potential new biomarker for gliomas. Neurosurgery (2013) 0.91
A microarray study of MPP+-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools. BMC Bioinformatics (2005) 0.90
mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis. BMC Bioinformatics (2013) 0.90
High-throughput processing and normalization of one-color microarrays for transcriptional meta-analyses. BMC Bioinformatics (2011) 0.89
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinformatics (2013) 0.88
Differential activation profiles of multiple transcription factors during dendritic cell maturation. J Invest Dermatol (2005) 0.86
Microarray characterization of gene expression changes in blood during acute ethanol exposure. BMC Med Genomics (2013) 0.86
Experimental validation of 5 in-silico predicted glioma biomarkers. Neuro Oncol (2013) 0.86
Identifying duplicate content using statistically improbable phrases. Bioinformatics (2010) 0.85
Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks. BMC Bioinformatics (2010) 0.85
State Space Model with hidden variables for reconstruction of gene regulatory networks. BMC Syst Biol (2011) 0.85
Systematic classification of non-coding RNAs by epigenomic similarity. BMC Bioinformatics (2013) 0.84
Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition. BMC Genomics (2008) 0.84
Learning the structure of gene regulatory networks from time series gene expression data. BMC Genomics (2011) 0.84
Bacillus anthracis lethal toxin reduces human alveolar epithelial barrier function. Infect Immun (2012) 0.84
Dynamics of microRNAs in bull spermatozoa. Reprod Biol Endocrinol (2012) 0.83
Identification of biomarkers that distinguish chemical contaminants based on gene expression profiles. BMC Genomics (2014) 0.83
Clustering of High Throughput Gene Expression Data. Comput Oper Res (2012) 0.83
Predicting genome-scale Arabidopsis-Pseudomonas syringae interactome using domain and interolog-based approaches. BMC Bioinformatics (2014) 0.82
LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches. BMC Bioinformatics (2014) 0.82
Comparing 2-nt 3' overhangs against blunt-ended siRNAs: a systems biology based study. BMC Genomics (2009) 0.82
Trends in the production of scientific data analysis resources. BMC Bioinformatics (2014) 0.82
Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning. BMC Bioinformatics (2013) 0.82
Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data. BMC Bioinformatics (2015) 0.81
GFP affects human T cell activation and cytokine production following in vitro stimulation. PLoS One (2013) 0.81
The curcuminoid CLEFMA selectively induces cell death in H441 lung adenocarcinoma cells via oxidative stress. Invest New Drugs (2010) 0.81
A Limited Sample Coarse-Grained Strategy and Its Applications to Molecular Crystals: Elastic Property Prediction and Nanoindentation Simulations of 1,3,5-Trinitro-1,3,5-Triazinane. J Phys Chem B (2016) 0.80
Identification of new members of hydrophobin family using primary structure analysis. BMC Bioinformatics (2006) 0.80
Identification and characterization of zebrafish ocular formation genes. Genome (2008) 0.80
Proteome-level display by 2-dimensional chromatography of extracellular matrix-dependent modulation of the phenotype of bladder cancer cells. Proteome Sci (2006) 0.80
Histone demethylase JMJD2A drives prostate tumorigenesis through transcription factor ETV1. J Clin Invest (2016) 0.80
Regional societies: fostering competitive research through virtual infrastructures. PLoS Biol (2004) 0.80
Proceedings of the 2012 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction. BMC Bioinformatics (2012) 0.79
Identification and optimization of classifier genes from multi-class earthworm microarray dataset. PLoS One (2010) 0.79
A Fourier transformation based method to mine peptide space for antimicrobial activity. BMC Bioinformatics (2006) 0.79
RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags. BMC Bioinformatics (2011) 0.79
Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment. BMC Bioinformatics (2013) 0.79
Micro-flowers changing to nano-bundle aggregates by translocation of the sugar moiety in Janus TA nucleosides. Chem Commun (Camb) (2013) 0.78
SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data. BMC Bioinformatics (2014) 0.78
Discrete diffusion models to study the effects of Mg2+ concentration on the PhoPQ signal transduction system. BMC Genomics (2010) 0.77
Medline: the knowledge buried therein, its potential, and cost. IEEE Eng Med Biol Mag (2007) 0.77
Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06). BMC Bioinformatics (2006) 0.77
Prioritizing uncharacterized genes in the search for glioma biomarkers. CNS Oncol (2014) 0.76
Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. BMC Bioinformatics (2007) 0.76
Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics (2013) 0.75
Proceedings of the 2015 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics (2015) 0.75
Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction. BMC Bioinformatics (2011) 0.75
Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. BMC Bioinformatics (2010) 0.75
MicroRNA: the newest player in gene expression regulation. Aviat Space Environ Med (2008) 0.75
Truth, probability, and frameworks. PLoS Med (2005) 0.75