The genome of the generalist plant pathogen Fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism.

PubWeight™: 0.95‹?› | Rank: Top 15%

🔗 View Article (PMC 4237347)

Published in PLoS One on November 19, 2014

Authors

Erik Lysøe1, Linda J Harris2, Sean Walkowiak3, Rajagopal Subramaniam3, Hege H Divon4, Even S Riiser1, Carlos Llorens5, Toni Gabaldón6, H Corby Kistler7, Wilfried Jonkers7, Anna-Karin Kolseth8, Kristian F Nielsen9, Ulf Thrane9, Rasmus J N Frandsen9

Author Affiliations

1: Department of Plant Health and Plant Protection, Bioforsk - Norwegian Institute of Agricultural and Environmental Research, Ås, Norway.
2: Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Canada.
3: Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Canada; Department of Biology, Carleton University, Ottawa, Canada.
4: Section of Mycology, Norwegian Veterinary Institute, Oslo, Norway.
5: Biotechvana, València, Spain.
6: Bioinformatics and Genomics Programme, Centre for Genomic Regulation, Barcelona, Spain; Universitat Pompeu Fabra, Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats, Barcelona, Spain.
7: ARS-USDA, Cereal Disease Laboratory, St. Paul, Minnesota, United States of America.
8: Department of Crop Production Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
9: Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark.

Articles cited by this

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52

EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet (2000) 69.26

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol (2001) 66.87

Versatile and open software for comparing large genomes. Genome Biol (2004) 49.45

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics (2005) 46.40

SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods (2011) 33.90

CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res (2010) 19.07

VISTA: computational tools for comparative genomics. Nucleic Acids Res (2004) 13.52

HMMER web server: interactive sequence similarity searching. Nucleic Acids Res (2011) 13.00

An improved general amino acid replacement matrix. Mol Biol Evol (2008) 9.36

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature (2010) 5.79

Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics (2008) 5.46

ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics (2009) 4.98

Glocal alignment: finding rearrangements during alignment. Bioinformatics (2003) 4.88

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science (2007) 4.43

The Top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol (2012) 4.03

Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J (2007) 2.71

Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinformatics (2009) 2.63

Micro-scale extraction procedure for standardized screening of fungal metabolite production in cultures. J Chromatogr A (1997) 2.61

Identification and characterization of Aspergillus nidulans mutants defective in cytokinesis. Genetics (1994) 2.57

Identification of a starter unit acyl-carrier protein transacylase domain in an iterative type I polyketide synthase. Proc Natl Acad Sci U S A (2006) 2.35

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet (2009) 2.29

A cyclic peptide synthetase gene required for pathogenicity of the fungus Cochliobolus carbonum on maize. Proc Natl Acad Sci U S A (1992) 1.94

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors. Bioinformatics (2008) 1.79

A small, cysteine-rich protein secreted by Fusarium oxysporum during colonization of xylem vessels is required for I-3-mediated resistance in tomato. Mol Microbiol (2004) 1.75

Shifting fungal reproductive mode by manipulation of mating type genes: obligatory heterothallism of Gibberella zeae. Mol Microbiol (2003) 1.72

Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites. PLoS Pathog (2013) 1.72

Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae. Mol Microbiol (2005) 1.65

Fungal LysM effectors: extinguishers of host immunity? Trends Microbiol (2009) 1.53

Functional analysis of the polyketide synthase genes in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum). Eukaryot Cell (2005) 1.53

The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome. PLoS One (2009) 1.53

Dereplication of microbial natural products by LC-DAD-TOFMS. J Nat Prod (2011) 1.50

Fusarin C biosynthesis in Fusarium moniliforme and Fusarium venenatum. Chembiochem (2004) 1.45

Distribution of zearalenone-producing Fusarium species in Japan. Appl Microbiol (1974) 1.45

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine. Genome Biol (2011) 1.42

Gibberella from A (venaceae) to Z (eae). Annu Rev Phytopathol (2003) 1.40

Fusarium pathogenomics. Annu Rev Microbiol (2013) 1.35

Identification of a gene cluster responsible for the biosynthesis of aurofusarin in the Fusarium graminearum species complex. Fungal Genet Biol (2005) 1.33

Cladosporium fulvum (syn. Passalora fulva), a highly specialized plant pathogen as a model for functional studies on plant pathogenic Mycosphaerellaceae. Mol Plant Pathol (2005) 1.30

Diversity, regulation, and evolution of the gibberellin biosynthetic pathway in fungi compared to plants and bacteria. Phytochemistry (2009) 1.23

Antioxidant systems in the pathogenic fungi of man and their role in virulence. Med Mycol (1999) 1.23

Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea. Mol Plant Microbe Interact (2002) 1.20

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3 (Bethesda) (2013) 1.18

Production of trichothecenes and zearalenone by Fusarium species isolated from wheat. Nahrung (1984) 1.17

Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus. BMC Genomics (2012) 1.14

Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria. Fungal Genet Biol (2013) 1.12

Aggressive dereplication using UHPLC-DAD-QTOF: screening extracts for up to 3000 fungal secondary metabolites. Anal Bioanal Chem (2014) 1.11

Biochemical and molecular analyses of gibberellin biosynthesis in fungi. Biosci Biotechnol Biochem (2006) 1.10

Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens. PLoS Genet (2013) 1.09

The transcriptome of Fusarium graminearum during the infection of wheat. Mol Plant Microbe Interact (2011) 1.07

Small, basic antifungal proteins secreted from filamentous ascomycetes: a comparative study regarding expression, structure, function and potential application. Appl Microbiol Biotechnol (2004) 1.02

Biochemistry and general genetics of nonribosomal peptide synthetases in fungi. Adv Biochem Eng Biotechnol (2004) 1.02

Purification and properties of dimethylallylpyrophosphate:tryptopharm dimethylallyl transferase, the first enzyme of ergot alkaloid biosynthesis in Claviceps. sp. SD 58. Arch Biochem Biophys (1976) 1.01

Biosynthesis of fusarubins accounts for pigmentation of Fusarium fujikuroi perithecia. Appl Environ Microbiol (2012) 1.01

Isolation and characterization of the gibberellin biosynthetic gene cluster in Sphaceloma manihoticola. Appl Environ Microbiol (2008) 1.00

Fusarium avenaceum -- the North European situation. Int J Food Microbiol (2007) 0.99

Mycotoxin production of selected Fusarium species at different culture conditions. Int J Food Microbiol (2010) 0.98

The PKS4 gene of Fusarium graminearum is essential for zearalenone production. Appl Environ Microbiol (2006) 0.98

Functional characterization and manipulation of the apicidin biosynthetic pathway in Fusarium semitectum. Mol Microbiol (2010) 0.97

Discovery of a novel superfamily of type III polyketide synthases in Aspergillus oryzae. Biochem Biophys Res Commun (2005) 0.96

Mating type sequences in asexually reproducing Fusarium species. Appl Environ Microbiol (2004) 0.95

Analysis of Fusarium avenaceum metabolites produced during wet apple core rot. J Agric Food Chem (2009) 0.95

Indole-diterpene biosynthetic capability of epichloë endophytes as predicted by ltm gene analysis. Appl Environ Microbiol (2009) 0.95

Quick guide to polyketide synthase and nonribosomal synthetase genes in Fusarium. Int J Food Microbiol (2012) 0.94

Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library. Mar Drugs (2014) 0.94

FSRD: fungal stress response database. Database (Oxford) (2013) 0.92

The role of MAPK signal transduction pathways in the response to oxidative stress in the fungal pathogen Candida albicans: implications in virulence. Curr Protein Pept Sci (2010) 0.91

Multilocus phylogenetic diversity of Fusarium avenaceum pathogenic on lisianthus. Phytopathology (2009) 0.91

Mycotoxins in cereal grain. Part IX. Zearalenone and Fusaria in wheat, barley, rye and corn kernels. Nahrung (1983) 0.90

Evidence for inter-specific recombination among the mitochondrial genomes of Fusarium species in the Gibberella fujikuroi complex. BMC Genomics (2013) 0.90

Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame. Fungal Genet Biol (2011) 0.89

Structure and evolution of the Fusarium mating type locus: new insights from the Gibberellafujikuroi complex. Fungal Genet Biol (2011) 0.89

Influence of carbohydrates on secondary metabolism in Fusarium avenaceum. Toxins (Basel) (2013) 0.89

Functional characterization of two cytochrome P450 monooxygenase genes, P450-1 and P450-4, of the gibberellic acid gene cluster in Fusarium proliferatum (Gibberella fujikuroi MP-D). Appl Environ Microbiol (2005) 0.89

Molecular phylogeny of the higher and lower taxonomy of the Fusarium genus and differences in the evolutionary histories of multiple genes. BMC Evol Biol (2011) 0.88

Population Dynamics of Fusarium spp. and Microdochium nivale in Crops and Crop Residues of Winter Wheat. Phytopathology (2007) 0.86

Comparative analysis of fungal protein kinases and associated domains. BMC Genomics (2010) 0.85

Apicidin F: characterization and genetic manipulation of a new secondary metabolite gene cluster in the rice pathogen Fusarium fujikuroi. PLoS One (2014) 0.84

Mycotoxin production by Fusarium species isolated from New Zealand maize fields. Mycopathologia (1991) 0.84

Deciphering the responses of root border-like cells of Arabidopsis and flax to pathogen-derived elicitors. Plant Physiol (2013) 0.82

JM47, a cyclic tetrapeptide HC-toxin analogue from a marine Fusarium species. Phytochemistry (2002) 0.81

Multilocus phylogenetics show high intraspecific variability within Fusarium avenaceum. Int J Mol Sci (2011) 0.81

Novel histone deacetylase inhibitors: cyclic tetrapeptide with trifluoromethyl and pentafluoroethyl ketones. Bioorg Med Chem Lett (2004) 0.81

Genetic transformation of Fusarium avenaceum by Agrobacterium tumefaciens mediated transformation and the development of a USER-Brick vector construction system. BMC Mol Biol (2014) 0.80

Screening for Fusarin C production by European isolates of Fusarium species. Mycotoxin Res (1988) 0.79

Fosfonochlorin, a new antibiotic with spheroplast forming activity. J Antibiot (Tokyo) (1989) 0.79

Mycotoxin production by Fusarium avenaceum strains isolated from Norwegian grain and the cytotoxicity of rice culture extracts to porcine kidney epithelial cells. J Agric Food Chem (2002) 0.78

Fusarium avenaceum causes burn spot disease syndrome in noble crayfish (Astacus astacus). J Invertebr Pathol (2013) 0.77

Characterization of gibberellin biosynthetic gene cluster from Fusarium proliferatum. J Microbiol Biotechnol (2013) 0.76