Published in Elife on December 31, 2014
Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition. EMBO J (2015) 1.08
Target activation by regulatory RNAs in bacteria. FEMS Microbiol Rev (2015) 1.07
Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo. EMBO J (2016) 0.98
Hfq: the flexible RNA matchmaker. Curr Opin Microbiol (2016) 0.96
How do base-pairing small RNAs evolve? FEMS Microbiol Rev (2015) 0.93
In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Mol Cell (2017) 0.91
Global Mapping of Small RNA-Target Interactions in Bacteria. Mol Cell (2016) 0.90
Acidic Residues in the Hfq Chaperone Increase the Selectivity of sRNA Binding and Annealing. J Mol Biol (2015) 0.83
Effects of Hfq on the conformation and compaction of DNA. Nucleic Acids Res (2015) 0.82
New insight into the structure and function of Hfq C-terminus. Biosci Rep (2015) 0.82
Arginine Patch Predicts the RNA Annealing Activity of Hfq from Gram-Negative and Gram-Positive Bacteria. J Mol Biol (2016) 0.82
RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAs. Curr Opin Biotechnol (2016) 0.80
Domain swapping between homologous bacterial small RNAs dissects processing and Hfq binding determinants and uncovers an aptamer for conditional RNase E cleavage. Nucleic Acids Res (2015) 0.79
C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA. Proc Natl Acad Sci U S A (2016) 0.78
Ribonucleoprotein particles of bacterial small non-coding RNA IsrA (IS61 or McaS) and its interaction with RNA polymerase core may link transcription to mRNA fate. Nucleic Acids Res (2015) 0.78
A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli. mSystems (2016) 0.76
Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode. Acta Crystallogr D Struct Biol (2017) 0.75
Functional analyses of putative PalS (Palindromic Self-recognition) motifs in bacterial Hfq. Biochem Biophys Res Commun (2017) 0.75
Role of terminator hairpin in biogenesis of functional Hfq-binding sRNAs. RNA (2017) 0.75
Acidic C-terminal domains autoregulate the RNA chaperone Hfq. Elife (2017) 0.75
Phaser crystallographic software. J Appl Crystallogr (2007) 108.34
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A (2000) 96.90
Features and development of Coot. Acta Crystallogr D Biol Crystallogr (2010) 89.46
REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr D Biol Crystallogr (2011) 39.32
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene (1995) 15.67
Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol Cell (2002) 5.26
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet (2008) 5.23
Controlling mRNA stability and translation with small, noncoding RNAs. Curr Opin Microbiol (2004) 5.11
Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol (2003) 4.98
Hfq and its constellation of RNA. Nat Rev Microbiol (2011) 4.94
Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell (2011) 4.68
Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. Cell (1999) 4.57
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J (2002) 3.88
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol (2006) 3.35
Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res (2007) 3.06
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci U S A (2009) 3.04
The ensemble nature of allostery. Nature (2014) 3.01
The role of structural disorder in the function of RNA and protein chaperones. FASEB J (2004) 2.98
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs. Nat Struct Mol Biol (2004) 2.79
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq. Mol Microbiol (2006) 2.69
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA (2003) 2.57
The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli. Mol Cell (2011) 2.23
An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J (2012) 2.10
Activation of gene expression by small RNA. Curr Opin Microbiol (2009) 2.04
Structural basis for RNA 3'-end recognition by Hfq. Proc Natl Acad Sci U S A (2011) 1.73
Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA. Proc Natl Acad Sci U S A (2010) 1.69
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc Natl Acad Sci U S A (2011) 1.64
Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem (2013) 1.63
Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis. Mol Microbiol (2008) 1.62
The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res (2007) 1.55
Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition. Proc Natl Acad Sci U S A (2012) 1.51
The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E. Mol Cell (2012) 1.49
What is cooperativity? Angew Chem Int Ed Engl (2009) 1.47
Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis. Nature (2011) 1.43
Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol (2009) 1.42
A small bacterial RNA regulates a putative ABC transporter. J Biol Chem (2004) 1.41
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell (2013) 1.39
Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli. Mol Cell (2014) 1.32
Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. Nucleic Acids Res (2011) 1.30
The role of disordered protein regions in the assembly of decapping complexes and RNP granules. Genes Dev (2013) 1.29
A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res (2011) 1.23
Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets. J Mol Biol (2013) 1.23
Cycling of RNAs on Hfq. RNA Biol (2013) 1.22
Conserved arginines on the rim of Hfq catalyze base pair formation and exchange. Nucleic Acids Res (2013) 1.19
Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq. Genes Dev (2012) 1.16
Cooperation of Escherichia coli Hfq hexamers in DsrA binding. Genes Dev (2011) 1.15
Hfq proximity and orientation controls RNA annealing. Nucleic Acids Res (2012) 1.11
Lsm proteins and Hfq: Life at the 3' end. RNA Biol (2013) 1.05
C-terminally truncated derivatives of Escherichia coli Hfq are proficient in riboregulation. J Mol Biol (2010) 1.04
Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation. EMBO J (2013) 1.03
A small RNA activates CFA synthase by isoform-specific mRNA stabilization. EMBO J (2013) 1.02
The role of RNases in the regulation of small RNAs. Curr Opin Microbiol (2014) 0.99
Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching. Nucleic Acids Res (2013) 0.97
An intrinsically disordered C terminus allows the La protein to assist the biogenesis of diverse noncoding RNA precursors. Proc Natl Acad Sci U S A (2011) 0.95
Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA. Nucleic Acids Res (2013) 0.91
Structural model of an mRNA in complex with the bacterial chaperone Hfq. Proc Natl Acad Sci U S A (2014) 0.91
Characterization of Vibrio cholerae Hfq provides novel insights into the role of the Hfq C-terminal region. J Mol Biol (2012) 0.90
Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS. RNA (2013) 0.90
Hfq binds ribonucleotides in three different RNA-binding sites. Acta Crystallogr D Biol Crystallogr (2013) 0.88
Both Sm-domain and C-terminal extension of Lsm1 are important for the RNA-binding activity of the Lsm1-7-Pat1 complex. RNA (2012) 0.88
Curli synthesis and biofilm formation in enteric bacteria are controlled by a dynamic small RNA module made up of a pseudoknot assisted by an RNA chaperone. Nucleic Acids Res (2014) 0.82
Gifsy-1 Prophage IsrK with Dual Function as Small and Messenger RNA Modulates Vital Bacterial Machineries. PLoS Genet (2016) 1.40
An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biol (2016) 0.87
Membrane recognition and dynamics of the RNA degradosome. PLoS Genet (2015) 0.82
cis-Encoded Small RNAs, a Conserved Mechanism for Repression of Polysaccharide Utilization in Bacteroides. J Bacteriol (2016) 0.80
Structural elucidation of a novel mechanism for the bacteriophage-based inhibition of the RNA degradosome. Elife (2016) 0.78
Evolution of Pectobacterium Bacteriophage ΦM1 To Escape Two Bifunctional Type III Toxin-Antitoxin and Abortive Infection Systems through Mutations in a Single Viral Gene. Appl Environ Microbiol (2017) 0.78
An NK Cell Perforin Response Elicited via IL-18 Controls Mucosal Inflammation Kinetics during Salmonella Gut Infection. PLoS Pathog (2016) 0.75
An allosteric transport mechanism for the AcrAB-TolC multidrug efflux pump. Elife (2017) 0.75
Association of the cold-shock DEAD-box RNA helicase RhlE to the RNA degradosome in Caulobacter crescentus. J Bacteriol (2017) 0.75
The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation. Sci Rep (2016) 0.75
Identity Determinants of the Translocation Signal for a Type 1 Secretion System. Front Physiol (2022) 0.75