Published in Mol Microbiol on July 12, 2006
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Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes. Nucleic Acids Res (2009) 1.25
The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes. Nucleic Acids Res (2011) 1.23
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Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. Nucleic Acids Res (2009) 1.17
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Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi. Nucleic Acids Res (2010) 1.06
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sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA Biol (2012) 1.04
The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair. Proc Natl Acad Sci U S A (2012) 1.04
Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway. Nucleic Acids Res (2010) 1.04
Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria. Nucleic Acids Res (2011) 1.00
Hfq affects mRNA levels independently of degradation. BMC Mol Biol (2010) 0.99
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Recognition of the small regulatory RNA RydC by the bacterial Hfq protein. Elife (2014) 0.98
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The small RNA GcvB regulates sstT mRNA expression in Escherichia coli. J Bacteriol (2008) 0.94
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Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress. J Bacteriol (2010) 0.92
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The Vibrio cholerae mannitol transporter is regulated posttranscriptionally by the MtlS small regulatory RNA. J Bacteriol (2011) 0.90
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Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coli. J Bacteriol (2013) 0.88
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Induction of the Pho regulon suppresses the growth defect of an Escherichia coli sgrS mutant, connecting phosphate metabolism to the glucose-phosphate stress response. J Bacteriol (2012) 0.83
Deciphering the interplay between two independent functions of the small RNA regulator SgrS in Salmonella. J Bacteriol (2013) 0.83
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Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity. Nucleic Acids Res (2014) 0.82
Transcriptional and post-transcriptional regulation of the Escherichia coli luxS mRNA; involvement of the sRNA MicA. PLoS One (2010) 0.82
Exploring sRNA-mediated gene silencing mechanisms using artificial small RNAs derived from a natural RNA scaffold in Escherichia coli. Nucleic Acids Res (2013) 0.82
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Interactions of the RNA-binding protein Hfq with cspA mRNA, encoding the major cold shock protein. J Bacteriol (2010) 0.81
Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region. RNA Biol (2014) 0.81
Identifying and characterizing Hfq-RNA interactions. Methods (2013) 0.81
The Acinetobacter baylyi Hfq gene encodes a large protein with an unusual C terminus. J Bacteriol (2009) 0.80
Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress. Mol Microbiol (2015) 0.80
Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior. PLoS One (2012) 0.80
The Escherichia coli GcvB sRNA Uses Genetic Redundancy to Control cycA Expression. ISRN Microbiol (2012) 0.79
Insights into transcription termination of Hfq-binding sRNAs of Escherichia coli and characterization of readthrough products. RNA (2015) 0.78
Hfq is required for optimal nitrate assimilation in the Cyanobacterium Anabaena sp. strain PCC 7120. J Bacteriol (2011) 0.78
Deletion of the Small RNA Chaperone Protein Hfq down Regulates Genes Related to Virulence and Confers Protection against Wild-Type Brucella Challenge in Mice. Front Microbiol (2016) 0.77
A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli. mSystems (2016) 0.76
Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages. PLoS One (2016) 0.76
Nucleoid and cytoplasmic localization of small RNAs in Escherichia coli. Nucleic Acids Res (2017) 0.75
Yersinia pestis and Yersinia pseudotuberculosis infection: a regulatory RNA perspective. Front Microbiol (2015) 0.75
Phenotypic characterization of Salmonella RyhB-1 mutations that modulate target regulation. Curr Microbiol (2014) 0.75
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev (2005) 3.66
Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction. Proc Natl Acad Sci U S A (2006) 2.08
Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli. Mol Microbiol (2004) 1.91
Accumulation of glucose 6-phosphate or fructose 6-phosphate is responsible for destabilization of glucose transporter mRNA in Escherichia coli. J Biol Chem (2003) 1.86
Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli. Genes Dev (2005) 1.82
Translation of aberrant mRNAs lacking a termination codon or with a shortened 3'-UTR is repressed after initiation in yeast. EMBO J (2005) 1.82
Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli. J Biol Chem (2004) 1.68
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc Natl Acad Sci U S A (2011) 1.64
SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs. RNA (2003) 1.56
Nascent-peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA. RNA (2004) 1.54
Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli. Mol Microbiol (2010) 1.29
RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA. Proc Natl Acad Sci U S A (2008) 1.28
SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli. Genes Cells (2002) 1.20
The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons. RNA (2002) 1.14
A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA. Mol Microbiol (2010) 1.13
Protein tagging at rare codons is caused by tmRNA action at the 3' end of nonstop mRNA generated in response to ribosome stalling. RNA (2005) 1.13
Bacterial SsrA system plays a role in coping with unwanted translational readthrough caused by suppressor tRNAs. Genes Cells (2002) 1.07
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Cleavage of mRNAs and role of tmRNA system under amino acid starvation in Escherichia coli. Mol Microbiol (2008) 1.02
Membrane localization itself but not binding to IICB is directly responsible for the inactivation of the global repressor Mlc in Escherichia coli. Mol Microbiol (2004) 0.98
Reduced action of polypeptide release factors induces mRNA cleavage and tmRNA tagging at stop codons in Escherichia coli. Mol Microbiol (2007) 0.94
Metabolic block at early stages of the glycolytic pathway activates the Rcs phosphorelay system via increased synthesis of dTDP-glucose in Escherichia coli. Mol Microbiol (2004) 0.92
Analyses of mRNA destabilization and translational inhibition mediated by Hfq-binding small RNAs. Methods Enzymol (2008) 0.87
Analysis of nonstop mRNA translation in the absence of tmRNA in Escherichia coli. Genes Cells (2009) 0.87
An oncoprotein from the plant pathogen agrobacterium has histone chaperone-like activity. Plant Cell (2007) 0.86
Small RNAs making a small protein. Proc Natl Acad Sci U S A (2007) 0.84
Detection of sRNA-mRNA interactions by electrophoretic mobility shift assay. Methods Mol Biol (2012) 0.82
The Plasmodium HU homolog, which binds the plastid DNA sequence-independent manner, is essential for the parasite's survival. FEBS Lett (2009) 0.82
Photo-induced regulation of the chromatic adaptive gene expression by Anabaena sensory rhodopsin. J Biol Chem (2012) 0.81
YeeI, a novel protein involved in modulation of the activity of the glucose-phosphotransferase system in Escherichia coli K-12. J Bacteriol (2006) 0.80
Three novel NY-ESO-1 epitopes bound to DRB1*0803, DQB1*0401 and DRB1*0901 recognized by CD4 T cells from CHP-NY-ESO-1-vaccinated patients. Vaccine (2010) 0.79
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