Published in Database (Oxford) on February 04, 2015
Using biological networks to integrate, visualize and analyze genomics data. Genet Sel Evol (2016) 0.96
A visual review of the interactome of LRRK2: Using deep-curated molecular interaction data to represent biology. Proteomics (2015) 0.82
HitPredict version 4: comprehensive reliability scoring of physical protein-protein interactions from more than 100 species. Database (Oxford) (2015) 0.82
Exploring novel mechanistic insights in Alzheimer's disease by assessing reliability of protein interactions. Sci Rep (2015) 0.77
HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1. Mol Cell Proteomics (2016) 0.76
Detecting modules in biological networks by edge weight clustering and entropy significance. Front Genet (2015) 0.76
Pathway-based network modeling finds hidden genes in shRNA screen for regulators of acute lymphoblastic leukemia. Integr Biol (Camb) (2016) 0.75
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors. Database (Oxford) (2016) 0.75
Yeast non-coding RNA interaction network. RNA (2017) 0.75
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2005) 37.39
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res (2010) 18.73
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res (2002) 15.70
Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res (2013) 11.67
STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res (2005) 10.44
BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. Nucleic Acids Res (2006) 10.36
The Reactome pathway knowledgebase. Nucleic Acids Res (2013) 8.56
The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol (2007) 8.24
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol (2007) 8.03
MINT, the molecular interaction database: 2009 update. Nucleic Acids Res (2009) 7.19
Gene Ontology annotations and resources. Nucleic Acids Res (2012) 6.13
The BioGRID interaction database: 2013 update. Nucleic Acids Res (2012) 6.09
Pathguide: a pathway resource list. Nucleic Acids Res (2006) 6.05
iRefIndex: a consolidated protein interaction database with provenance. BMC Bioinformatics (2008) 5.77
The ChEMBL bioactivity database: an update. Nucleic Acids Res (2013) 5.41
Analysis Tool Web Services from the EMBL-EBI. Nucleic Acids Res (2013) 5.29
An experimentally derived confidence score for binary protein-protein interactions. Nat Methods (2008) 5.27
PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods (2011) 5.01
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res (2013) 4.39
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat Methods (2012) 3.17
APID: Agile Protein Interaction DataAnalyzer. Nucleic Acids Res (2006) 2.91
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation. Nucleic Acids Res (2012) 2.66
Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biol (2007) 2.45
MPIDB: the microbial protein interaction database. Bioinformatics (2008) 2.42
A protein domain-based interactome network for C. elegans early embryogenesis. Cell (2008) 2.23
neXtProt: organizing protein knowledge in the context of human proteome projects. J Proteome Res (2012) 1.80
MatrixDB, the extracellular matrix interaction database. Nucleic Acids Res (2010) 1.79
VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. Nucleic Acids Res (2008) 1.71
Protein-protein interactions essentials: key concepts to building and analyzing interactome networks. PLoS Comput Biol (2010) 1.67
mentha: a resource for browsing integrated protein-interaction networks. Nat Methods (2013) 1.60
The Biomolecular Interaction Network Database in PSI-MI 2.5. Database (Oxford) (2011) 1.34
HPIDB--a unified resource for host-pathogen interactions. BMC Bioinformatics (2010) 1.31
Molecular interaction databases. Proteomics (2012) 1.22
A database for chemical proteomics: ChEBI. Methods Mol Biol (2012) 1.19
Integration of cardiac proteome biology and medicine by a specialized knowledgebase. Circ Res (2013) 1.15
Biological network exploration with cytoscape 3. Curr Protoc Bioinformatics (2014) 1.14
TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function. Nucleic Acids Res (2011) 1.03
Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis. Nucleic Acids Res (2013) 1.01
Assessing and predicting protein interactions using both local and global network topological metrics. Genome Inform (2008) 0.97
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. Mol Cell Proteomics (2012) 0.92
Simple topological features reflect dynamics and modularity in protein interaction networks. PLoS Comput Biol (2013) 0.81