Published in Nucleic Acids Res on April 27, 2015
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database. Nucleic Acids Res (2015) 1.35
Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Front Microbiol (2015) 0.97
Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants. Proc Natl Acad Sci U S A (2015) 0.91
GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications. Bioinformatics (2015) 0.84
Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing. Clin Microbiol Rev (2016) 0.82
Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum. ISME J (2016) 0.82
Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America. PLoS One (2016) 0.80
Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties. Brief Bioinform (2017) 0.80
The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus. BMC Genomics (2016) 0.80
Whole genome sequence analysis of an Alachlor and Endosulfan degrading Pseudomonas strain W15Feb9B isolated from Ochlockonee River, Florida. Genom Data (2016) 0.78
Comparative Genomics of the Extreme Acidophile Acidithiobacillus thiooxidans Reveals Intraspecific Divergence and Niche Adaptation. Int J Mol Sci (2016) 0.78
Whole Genome Sequence Analysis of an Alachlor and Endosulfan Degrading Micrococcus sp. strain 2385 Isolated from Ochlockonee River, Florida. J Genomics (2016) 0.78
Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation. PLoS One (2016) 0.78
Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea. Front Microbiol (2016) 0.77
Whole genome sequencing of 7 strains of Staphylococcus lugdunensis allows identification of mobile genetic elements. Genome Biol Evol (2017) 0.77
Computational methods for predicting genomic islands in microbial genomes. Comput Struct Biotechnol J (2016) 0.76
Genome Sequences of Two Multidrug-Resistant Acinetobacter baumannii Clinical Strains Isolated from Southern India. Genome Announc (2015) 0.76
Genomic Analysis of Phylotype I Strain EP1 Reveals Substantial Divergence from Other Strains in the Ralstonia solanacearum Species Complex. Front Microbiol (2016) 0.76
Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria. BMC Evol Biol (2017) 0.76
Comparative analysis of essential genes in prokaryotic genomic islands. Sci Rep (2015) 0.76
Genome sequencing and analysis of the first complete genome of Lactobacillus kunkeei strain MP2, an Apis mellifera gut isolate. PeerJ (2016) 0.76
Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA. BMC Genomics (2016) 0.76
Gene Turnover Contributes to the Evolutionary Adaptation of Acidithiobacillus caldus: Insights from Comparative Genomics. Front Microbiol (2016) 0.76
When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens. Front Microbiol (2016) 0.76
Comparative genomics reveals Lysinibacillus sphaericus group comprises a novel species. BMC Genomics (2016) 0.76
A genomic view of food-related and probiotic Enterococcus strains. DNA Res (2016) 0.75
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand. PLoS One (2016) 0.75
Genome-centric evaluation of Burkholderia sp. strain SRS-W-2-2016 resistant to high concentrations of uranium and nickel isolated from the Savannah River Site (SRS), USA. Genom Data (2017) 0.75
Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors. Front Microbiol (2017) 0.75
Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4. Front Microbiol (2017) 0.75
Biology of archaea from a novel family Cuniculiplasmataceae (Thermoplasmata) ubiquitous in hyperacidic environments. Sci Rep (2016) 0.75
Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress. Front Microbiol (2017) 0.75
Single-Molecule Sequencing (PacBio) of the Staphylococcus capitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment. Front Microbiol (2016) 0.75
CRISPR System Acquisition and Evolution of an Obligate Intracellular Chlamydia-Related Bacterium. Genome Biol Evol (2016) 0.75
Draft Genome Sequence of Desulfovibrio BerOc1, a Mercury-Methylating Strain. Genome Announc (2017) 0.75
A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm. PLoS One (2016) 0.75
Comparative Genome Analyses of Streptococcus suis Isolates from Endocarditis Demonstrate Persistence of Dual Phenotypic Clones. PLoS One (2016) 0.75
Isolation and plasmid characterization of carbapenemase (IMP-4) producing Salmonella enterica Typhimurium from cats. Sci Rep (2016) 0.75
Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering. Front Microbiol (2016) 0.75
Comparative Genomic Analysis of Two Vibrio toranzoniae Strains with Different Virulence Capacity Reveals Clues on Its Pathogenicity for Fish. Front Microbiol (2017) 0.75
Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands. BMC Microbiol (2017) 0.75
The complete genome sequence of the yogurt isolate Streptococcus thermophilus ACA-DC 2. Stand Genomic Sci (2017) 0.75
Complete Genome Sequence of the Plasmid-Bearing Lactobacillus fermentum Strain SNUV175, a Probiotic for Women's Health Isolated from the Vagina of a Healthy South Korean Woman. Genome Announc (2017) 0.75
Complete Genome Sequence of Serratia marcescens U36365, a Green Pigment-Producing Strain Isolated from a Patient with Urinary Tract Infection. Genome Announc (2016) 0.75
Draft Genome of Shewanella frigidimarina Ag06-30, a Marine Bacterium Isolated from Potter Peninsula, King George Island, Antarctica. Genome Announc (2016) 0.75
Complete genome sequences of the Serratia plymuthica strains 3Rp8 and 3Re4-18, two rhizosphere bacteria with antagonistic activity towards fungal phytopathogens and plant growth promoting abilities. Stand Genomic Sci (2016) 0.75
Data on genome analysis of Bacillus velezensis LS69. Data Brief (2017) 0.75
Comparative Genome Analyses of Vibrio anguillarum Strains Reveal a Link with Pathogenicity Traits. mSystems (2017) 0.75
A Whole-Genome Sequencing Approach To Study Cefoxitin-Resistant Salmonella enterica Serovar Heidelberg Isolates from Various Sources. Antimicrob Agents Chemother (2017) 0.75
Complete Genome Sequence of Lactobacillus jensenii Strain SNUV360, a Probiotic for Treatment of Bacterial Vaginosis Isolated from the Vagina of a Healthy Korean Woman. Genome Announc (2017) 0.75
Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites. Stand Genomic Sci (2016) 0.75
Complete Genome Sequence of Serratia marcescens SmUNAM836, a Nonpigmented Multidrug-Resistant Strain Isolated from a Mexican Patient with Obstructive Pulmonary Disease. Genome Announc (2016) 0.75
The invasive Neisseria meningitidis MenC CC103 from Brazil is characterized by an accessory gene repertoire. Sci Rep (2017) 0.75
Genomic Features of Environmental and Clinical Vibrio parahaemolyticus Isolates Lacking Recognized Virulence Factors Are Dissimilar. Appl Environ Microbiol (2015) 0.75
Pangenome Evidence for Higher Codon Usage Bias and Stronger Translational Selection in Core Genes of Escherichia coli. Front Microbiol (2016) 0.75
Genomic analyses of multidrug resistant Pseudomonas aeruginosa PA1 resequenced by single-molecule real-time sequencing. Biosci Rep (2016) 0.75
Genome and transcriptome analysis of surfactin biosynthesis in Bacillus amyloliquefaciens MT45. Sci Rep (2017) 0.75
Complete Genome Sequence of Acinetobacter baumannii Strain B8342, a Motility-Positive Clinical Isolate. Genome Announc (2015) 0.75
Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genus Acidithiobacillus: Functional Inferences and Use As Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation. Front Microbiol (2016) 0.75
MycoCAP - Mycobacterium Comparative Analysis Platform. Sci Rep (2015) 0.75
Adaptive evolution of extreme acidophile Sulfobacillus thermosulfidooxidans potentially driven by horizontal gene transfer and gene loss. Appl Environ Microbiol (2017) 0.75
Complete Genome Sequence of Acinetobacter sp. Strain NCu2D-2 Isolated from a Mouse. Genome Announc (2017) 0.75
Intraclonal Genome Stability of the Metallo-β-lactamase SPM-1-producing Pseudomonas aeruginosa ST277, an Endemic Clone Disseminated in Brazilian Hospitals. Front Microbiol (2016) 0.75
Complete Genome Sequence of Acinetobacter baumannii Strain B8300, Which Displays High Twitching Motility. Genome Announc (2015) 0.75
H-NS: an overarching regulator of the Vibrio cholerae life cycle. Res Microbiol (2016) 0.75
Genomic and functional features of the biosurfactant producing Bacillus sp. AM13. Funct Integr Genomics (2016) 0.75
Comparative Analysis of the Flavobacterium columnare Genomovar I and II Genomes. Front Microbiol (2017) 0.75
Identification of an operon involved in fluoride resistance in Enterobacter cloacae FRM. Sci Rep (2017) 0.75
Genome Sequencing of Ralstonia solanacearum CQPS-1, a Phylotype I Strain Collected from a Highland Area with Continuous Cropping of Tobacco. Front Microbiol (2017) 0.75
A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. Front Microbiol (2017) 0.75
The Transcriptional Regulators of the CRP Family Regulate Different Essential Bacterial Functions and Can Be Inherited Vertically and Horizontally. Front Microbiol (2017) 0.75
Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome. Int J Genomics (2017) 0.75
Genome assembly of Chryseobacterium sp. strain IHBB 10212 from glacier top-surface soil in the Indian trans-Himalayas with potential for hydrolytic enzymes. Genom Data (2017) 0.75
Genome sequence of "Leucobacter massiliensis" sp. nov. isolated from human pharynx after travel to the 2014 Hajj. New Microbes New Infect (2017) 0.75
The complete genome sequence of Exiguobacterium arabatum W-01 reveals potential probiotic functions. Microbiologyopen (2017) 0.75
Complete Genome Sequence of the Sourdough Isolate Lactobacillus zymae ACA-DC 3411. Genome Announc (2017) 0.75
Glimpse into the genome sequence of a multidrug-resistant Acinetobacter pittii ST950 clinical isolate carrying the blaOXA-72 and blaOXA-533 genes in China. Mem Inst Oswaldo Cruz (2017) 0.75
Complete Genome Analysis of Thermus parvatiensis and Comparative Genomics of Thermus spp. Provide Insights into Genetic Variability and Evolution of Natural Competence as Strategic Survival Attributes. Front Microbiol (2017) 0.75
The rapid in vivo evolution of Pseudomonas aeruginosa in ventilator-associated pneumonia patients leads to attenuated virulence. Open Biol (2017) 0.75
Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster. Microb Ecol (2016) 0.75
Comparative Genomics Reveals High Genomic Diversity in the Genus Photobacterium. Front Microbiol (2017) 0.75
Comparative genomics of Lactobacillus kefiranofaciens ZW3 and related members of Lactobacillus. spp reveal adaptations to dairy and gut environments. Sci Rep (2017) 0.75
Emergence and Evolution of Multidrug-Resistant Klebsiella pneumoniae with both blaKPC and blaCTX-M Integrated in Chromosome. Antimicrob Agents Chemother (2017) 0.75
The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen. Genome Biol Evol (2017) 0.75
Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes. Front Microbiol (2017) 0.75
Draft Genome Sequence of Aeromonas hydrophila Strain BSK-10 (Serotype O97), Isolated from Carassius carassius with Motile Aeromonad Septicemia in China. Genome Announc (2017) 0.75
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ARDB--Antibiotic Resistance Genes Database. Nucleic Acids Res (2008) 7.82
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Reordering contigs of draft genomes using the Mauve aligner. Bioinformatics (2009) 6.97
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The comprehensive antibiotic resistance database. Antimicrob Agents Chemother (2013) 6.41
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Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes. EMBO Rep (2001) 4.78
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res (2011) 4.36
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinformatics (2006) 3.15
IslandPath: aiding detection of genomic islands in prokaryotes. Bioinformatics (2003) 3.02
Evaluation of genomic island predictors using a comparative genomics approach. BMC Bioinformatics (2008) 2.62
Pathogenicity islands: a molecular toolbox for bacterial virulence. Cell Microbiol (2006) 2.44
Detecting genomic islands using bioinformatics approaches. Nat Rev Microbiol (2010) 2.22
CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes. Nucleic Acids Res (2009) 1.78
IslandViewer update: Improved genomic island discovery and visualization. Nucleic Acids Res (2013) 1.76
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Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Res (2010) 5.23
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IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. Nucleic Acids Res (2017) 0.80