Published in Front Genet on April 20, 2015
Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. Microbiome (2016) 0.93
Pathways and functions of gut microbiota metabolism impacting host physiology. Curr Opin Biotechnol (2015) 0.83
Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health. Front Microbiol (2016) 0.83
Systems biology of host-microbe metabolomics. Wiley Interdiscip Rev Syst Biol Med (2015) 0.83
Mucosal Interactions between Genetics, Diet, and Microbiome in Inflammatory Bowel Disease. Front Immunol (2016) 0.82
Cervical Microbiota Associated with Higher Grade Cervical Intraepithelial Neoplasia in Women Infected with High-Risk Human Papillomaviruses. Cancer Prev Res (Phila) (2016) 0.79
Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics. ISME J (2017) 0.78
Lactic acid bacteria as a cell factory for riboflavin production. Microb Biotechnol (2015) 0.78
Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities. ISME J (2017) 0.77
Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis. Front Microbiol (2016) 0.77
Propelling the paradigm shift from reductionism to systems nutrition. Genes Nutr (2017) 0.75
Gastrointestinal immune and microbiome changes during parenteral nutrition. Am J Physiol Gastrointest Liver Physiol (2017) 0.75
FolC2-mediated folate metabolism contributes to suppression of inflammation by probiotic Lactobacillus reuteri. Microbiologyopen (2016) 0.75
A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea. Nucleic Acids Res (2017) 0.75
Pre- and post-weaning diet alters the faecal metagenome in the cat with differences vitamin and carbohydrate metabolism gene abundances. Sci Rep (2016) 0.75
Coenzyme B12 synthesis as a baseline to study metabolite contribution of animal microbiota. Microb Biotechnol (2017) 0.75
Gene expression of Lactobacillus plantarum and the commensal microbiota in the ileum of healthy and early SIV-infected rhesus macaques. Sci Rep (2016) 0.75
Illumina Sequencing Approach to Characterize Thiamine Metabolism Related Bacteria and the Impacts of Thiamine Supplementation on Ruminal Microbiota in Dairy Cows Fed High-Grain Diets. Front Microbiol (2017) 0.75
Use of near-infrared spectroscopy (NIRs) in the biopharmaceutical industry for real-time determination of critical process parameters and integration of advanced feedback control strategies using MIDUS control. J Ind Microbiol Biotechnol (2017) 0.75
Secretome of Intestinal Bacilli: A Natural Guard against Pathologies. Front Microbiol (2017) 0.75
Anticancer effects of the microbiome and its products. Nat Rev Microbiol (2017) 0.75
Meat Intake and the Dose of Vitamin B3 - Nicotinamide: Cause of the Causes of Disease Transitions, Health Divides, and Health Futures? Int J Tryptophan Res (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
Mutants of Escherichia coli requiring methionine or vitamin B12. J Bacteriol (1950) 88.88
An obesity-associated gut microbiome with increased capacity for energy harvest. Nature (2006) 44.35
A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63
Structure, function and diversity of the healthy human microbiome. Nature (2012) 30.40
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res (2005) 29.61
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res (2013) 29.49
Microbial ecology of the gastrointestinal tract. Annu Rev Microbiol (1977) 17.41
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics (2006) 14.96
A framework for human microbiome research. Nature (2012) 11.41
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res (2011) 10.82
Nutritional features of Bacteroides fragilis subsp. fragilis. Appl Microbiol (1974) 7.82
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res (2012) 6.90
CDD: conserved domains and protein three-dimensional structure. Nucleic Acids Res (2012) 6.39
Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A (2010) 5.02
Metabolic interactions among intestinal microorganisms. Am J Clin Nutr (1974) 4.53
Role of antibiotic penetration limitation in Klebsiella pneumoniae biofilm resistance to ampicillin and ciprofloxacin. Antimicrob Agents Chemother (2000) 4.41
Accessing the SEED genome databases via Web services API: tools for programmers. BMC Bioinformatics (2010) 3.99
MR1 presents microbial vitamin B metabolites to MAIT cells. Nature (2012) 3.71
NAD+ metabolism in health and disease. Trends Biochem Sci (2006) 3.45
Conservation of the biotin regulon and the BirA regulatory signal in Eubacteria and Archaea. Genome Res (2002) 3.26
The secret life of NAD+: an old metabolite controlling new metabolic signaling pathways. Endocr Rev (2009) 3.23
Vitamin B12 (cobalamin) deficiency in elderly patients. CMAJ (2004) 2.93
Regulation of flavin synthesis by Escherichia coli. J Gen Microbiol (1962) 2.62
The structural and biochemical foundations of thiamin biosynthesis. Annu Rev Biochem (2009) 2.32
Determination of bacterial cell dry mass by transmission electron microscopy and densitometric image analysis. Appl Environ Microbiol (1998) 2.19
Contribution of microbial amino acids to amino acid homeostasis of the host. J Nutr (2000) 2.17
NAD biosynthesis: identification of the tryptophan to quinolinate pathway in bacteria. Chem Biol (2003) 2.11
SLC5A8, a sodium transporter, is a tumor suppressor gene silenced by methylation in human colon aberrant crypt foci and cancers. Proc Natl Acad Sci U S A (2003) 2.01
Bacterial DNA ligases. Mol Microbiol (2001) 1.77
Comparison of compositions and metabolic activities of fecal microbiotas in young adults and in antibiotic-treated and non-antibiotic-treated elderly subjects. Appl Environ Microbiol (2004) 1.76
Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis. Appl Environ Microbiol (2005) 1.74
Vitamin B12 and folate deficiency in later life. Age Ageing (2004) 1.67
Determination of bacterial cell volume with the Coulter Counter. J Bacteriol (1986) 1.62
Bacterial strain typing in the genomic era. FEMS Microbiol Rev (2009) 1.52
Bacteria as vitamin suppliers to their host: a gut microbiota perspective. Curr Opin Biotechnol (2012) 1.51
Metabolic defects caused by mutations in the isc gene cluster in Salmonella enterica serovar typhimurium: implications for thiamine synthesis. J Bacteriol (2000) 1.48
Helicobacter pylori growth and urease detection in the chemically defined medium Ham's F-12 nutrient mixture. J Clin Microbiol (2001) 1.43
Recent advances in carrier-mediated intestinal absorption of water-soluble vitamins. Annu Rev Physiol (2004) 1.40
A defined growth medium for Clostridium difficile. Microbiology (1995) 1.38
Identification and functional characterization of a novel human and rat riboflavin transporter, RFT1. Am J Physiol Cell Physiol (2008) 1.38
Genetic control of biosynthesis and transport of riboflavin and flavin nucleotides and construction of robust biotechnological producers. Microbiol Mol Biol Rev (2011) 1.38
Development of a synthetic minimal medium for Listeria monocytogenes. Appl Environ Microbiol (2003) 1.34
Lactobacillus reuteri CRL1098 produces cobalamin. J Bacteriol (2003) 1.33
Intestinal flora and endogenous vitamin synthesis. Eur J Cancer Prev (1997) 1.33
Molecular and functional characterization of the intestinal Na+-dependent multivitamin transporter. Arch Biochem Biophys (1999) 1.32
Cloning, sequence, and expression of the pantothenate permease (panF) gene of Escherichia coli. J Bacteriol (1990) 1.30
Closing in on complete pathways of biotin biosynthesis. Mol Biosyst (2011) 1.26
The biosynthesis of nicotinamide adenine dinucleotides in bacteria. Vitam Horm (2001) 1.24
The complete coenzyme B12 biosynthesis gene cluster of Lactobacillus reuteri CRL1098. Microbiology (2008) 1.22
Folate production by probiotic bacteria. Nutrients (2011) 1.21
Pyruvate formate lyase and acetate kinase are essential for anaerobic growth of Escherichia coli on xylose. J Bacteriol (2004) 1.18
Microbial NAD metabolism: lessons from comparative genomics. Microbiol Mol Biol Rev (2009) 1.17
Identification and quantitation of cobalamin and cobalamin analogues in human feces. Am J Clin Nutr (2008) 1.16
Moderate folate depletion modulates the expression of selected genes involved in cell cycle, intracellular signaling and folate uptake in human colonic epithelial cell lines. J Nutr Biochem (2007) 1.14
Pyridine nucleotide metabolism in Escherichia coli. 3. Biosynthesis from alternative precursors in vivo. J Biol Chem (1973) 1.14
A palatable diet for producing experimental folate deficiency in man. Am J Clin Nutr (1963) 1.07
Role of vitamin B 6 biosynthetic rate in the study of vitamin B 6 synthesis in Escherichia coli. J Bacteriol (1971) 1.05
Plant B vitamin pathways and their compartmentation: a guide for the perplexed. J Exp Bot (2012) 1.02
Transport and utilization of methyltetrahydrofolates by Lactobacillus casei. J Biol Chem (1976) 1.01
Comparative genomics of NAD biosynthesis in cyanobacteria. J Bacteriol (2006) 1.00
Identification of nicotinamide mononucleotide deamidase of the bacterial pyridine nucleotide cycle reveals a novel broadly conserved amidohydrolase family. J Biol Chem (2011) 0.97
Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe. J Bacteriol (2014) 0.97
New frontiers in structural flavoenzymology. Curr Opin Struct Biol (2006) 0.97
Biotin in clinical medicine--a review. Am J Clin Nutr (1981) 0.92
Vitamin B12 as a modulator of gut microbial ecology. Cell Metab (2014) 0.91
Glutamine versus ammonia utilization in the NAD synthetase family. PLoS One (2012) 0.88
NAD(+) biosynthesis and salvage--a phylogenetic perspective. FEBS J (2012) 0.86
Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum. Environ Microbiol Rep (2014) 0.85
How can Faecalibacterium prausnitzii employ riboflavin for extracellular electron transfer? Antioxid Redox Signal (2012) 0.84
Comparative genomics guided discovery of two missing archaeal enzyme families involved in the biosynthesis of the pterin moiety of tetrahydromethanopterin and tetrahydrofolate. ACS Chem Biol (2012) 0.84
Genomics-guided analysis of NAD recycling yields functional elucidation of COG1058 as a new family of pyrophosphatases. PLoS One (2013) 0.83
Development of a minimal growth medium for Lactobacillus plantarum. Lett Appl Microbiol (2010) 0.82
Interaction between H2-producing and non-H2-producing cellulolytic bacteria from the human colon. FEMS Microbiol Lett (2005) 0.82
Studies of thiamine uptake in growing cultures and in cell fragments of Lactobacillus fermenti. Acta Chem Scand (1971) 0.81
Uptake of extracellular biotin by Escherichia coli biotin prototrophs. J Bacteriol (1978) 0.76
Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota. Front Microbiol (2014) 0.78
Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis. Front Microbiol (2016) 0.77
MetaboTools: A Comprehensive Toolbox for Analysis of Genome-Scale Metabolic Models. Front Physiol (2016) 0.75
Editorial: The Human Gutome: Nutrigenomics of Host-Microbiome Interactions. Front Genet (2016) 0.75