De Novo Assembly and Characterization of Fruit Transcriptome in Black Pepper (Piper nigrum).

PubWeight™: 1.40‹?› | Rank: Top 5%

🔗 View Article (PMC 4488137)

Published in PLoS One on June 29, 2015

Authors

Lisong Hu1, Chaoyun Hao1, Rui Fan2, Baoduo Wu2, Lehe Tan3, Huasong Wu3

Author Affiliations

1: Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Science (CATAS), Wanning, Hainan 571533, China; Key Laboratory of Genetic Resources Utilization of Spice and Beverage Crops, Ministry of Agriculture, Wanning, Hainan 571533, China.
2: Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Science (CATAS), Wanning, Hainan 571533, China; Hainan Provincial Key Laboratory of Genetic Improvement and Quality Regulation for Tropical Spice and Beverage Crops, Wanning, Hainan 571533, China.
3: Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Science (CATAS), Wanning, Hainan 571533, China; Key Laboratory of Genetic Resources Utilization of Spice and Beverage Crops, Ministry of Agriculture, Wanning, Hainan 571533, China; Hainan Provincial Key Laboratory of Genetic Improvement and Quality Regulation for Tropical Spice and Beverage Crops, Wanning, Hainan 571533, China.

Articles cited by this

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol (2002) 82.19

RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet (2009) 58.77

Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86

A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol (2010) 22.10

Housekeeping genes as internal standards: use and limits. J Biotechnol (1999) 19.05

Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper--Excel-based tool using pair-wise correlations. Biotechnol Lett (2004) 18.55

Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10

High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res (2008) 13.51

De novo assembly and analysis of RNA-seq data. Nat Methods (2010) 9.69

Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics (1994) 6.40

Next-generation transcriptome assembly. Nat Rev Genet (2011) 5.89

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas). BMC Genomics (2010) 3.32

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics (2011) 2.88

Black pepper and its pungent principle-piperine: a review of diverse physiological effects. Crit Rev Food Sci Nutr (2007) 1.87

Effects of piperine, the pungent component of black pepper, at the human vanilloid receptor (TRPV1). Br J Pharmacol (2005) 1.33

The antioxidant and radical scavenging activities of black pepper (Piper nigrum) seeds. Int J Food Sci Nutr (2005) 1.22

Influence of dietary spices and their active principles on pancreatic digestive enzymes in albino rats. Nahrung (2000) 1.08

Transcriptomic analysis of a tertiary relict plant, extreme xerophyte Reaumuria soongorica to identify genes related to drought adaptation. PLoS One (2013) 1.08

Next-generation sequencing technologies for gene expression profiling in plants. Brief Funct Genomics (2011) 1.08

Cadaverine--pyruvate transamination: the principal step of enzymatic quinolizidine alkaloid biosynthesis in Lupinus polyphyllus cell suspension cultures. FEBS Lett (1979) 0.97

Activation of TRPV1 and TRPA1 by black pepper components. Biosci Biotechnol Biochem (2010) 0.96

Pharmacological basis for the medicinal use of black pepper and piperine in gastrointestinal disorders. J Med Food (2010) 0.95

High-throughput sequencing of black pepper root transcriptome. BMC Plant Biol (2012) 0.95

Lysine decarboxylase catalyzes the first step of quinolizidine alkaloid biosynthesis and coevolved with alkaloid production in leguminosae. Plant Cell (2012) 0.93

De novo transcriptome sequencing reveals a considerable bias in the incidence of simple sequence repeats towards the downstream of 'Pre-miRNAs' of black pepper. PLoS One (2013) 0.93

Quinolizidine alkaloids: biochemistry, metabolism, and function in plants and cell suspension cultures. Planta Med (1987) 0.92

De novo assembly of the desert tree Haloxylon ammodendron (C. A. Mey.) based on RNA-Seq data provides insight into drought response, gene discovery and marker identification. BMC Genomics (2014) 0.91

Spice phenolics inhibit human PMNL 5-lipoxygenase. Prostaglandins Leukot Essent Fatty Acids (2004) 0.91

Transcriptomic analysis of flower development in wintersweet (Chimonanthus praecox). PLoS One (2014) 0.90

Quinolizidine alkaloid biosynthesis: recent advances and future prospects. Front Plant Sci (2012) 0.87

Piperine, a natural bioenhancer, nullifies the antidiabetic and antioxidant activities of curcumin in streptozotocin-diabetic rats. PLoS One (2014) 0.87

De novo transcriptome of the Hemimetabolous German cockroach (Blattella germanica). PLoS One (2014) 0.85