Phylogeny and differentiation of the St genome in Elymus L. sensu lato (Triticeae; Poaceae) based on one nuclear DNA and two chloroplast genes.

PubWeight™: 0.75‹?›

🔗 View Article (PMC 4499217)

Published in BMC Plant Biol on July 12, 2015

Authors

Zhen-Zhen Dong1,2, Xing Fan3, Li-Na Sha4, Yi Wang5, Jian Zeng6, Hou-Yang Kang7, Hai-Qin Zhang8, Xiao-Li Wang9, Li Zhang10, Chun-Bang Ding11, Rui-Wu Yang12, Yong-Hong Zhou13,14

Author Affiliations

1: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. DZZLL55@163.com.
2: Key Laboratory of Genetic Resources and Crop Improvement, Ministry of Education, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. DZZLL55@163.com.
3: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. fanxing9988@163.com.
4: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. rice_shazhi@163.com.
5: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. wangy19823918@gmail.com.
6: College of Resources and Environment, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. zengjian777@126.com.
7: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. xiaokang_69@126.com.
8: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. haiqinzhang@163.com.
9: College of Life Science, Sichuan Agricultural University, Yaan, 625014, Sichuan, China. wangxiaoli288@163.com.
10: College of Life Science, Sichuan Agricultural University, Yaan, 625014, Sichuan, China. zhang8434@sina.com.
11: College of Life Science, Sichuan Agricultural University, Yaan, 625014, Sichuan, China. dcb@sicau.edu.cn.
12: College of Life Science, Sichuan Agricultural University, Yaan, 625014, Sichuan, China. yrwu@sicau.edu.cn.
13: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. zhouyh@sicau.edu.cn.
14: Key Laboratory of Genetic Resources and Crop Improvement, Ministry of Education, Sichuan Agricultural University, Wenjiang 611130, Chengdu, Sichuan, China. zhouyh@sicau.edu.cn.

Articles cited by this

MODELTEST: testing the model of DNA substitution. Bioinformatics (1998) 101.19

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics (1989) 73.50

On the number of segregating sites in genetical models without recombination. Theor Popul Biol (1975) 60.96

Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol (1999) 35.53

Statistical tests of neutrality of mutations. Genetics (1993) 24.94

HyPhy: hypothesis testing using phylogenies. Bioinformatics (2004) 17.33

A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res (1999) 12.56

Genome evolution in polyploids. Plant Mol Biol (2000) 9.92

Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc Natl Acad Sci U S A (1995) 5.19

The role of genetic and genomic attributes in the success of polyploids. Proc Natl Acad Sci U S A (2000) 4.47

Estimating ancestral population parameters. Genetics (1997) 4.42

The evolutionary consequences of polyploidy. Cell (2007) 3.80

An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression. Mol Phylogenet Evol (1995) 1.80

Utility of low-copy nuclear gene sequences in plant phylogenetics. Crit Rev Biochem Mol Biol (2002) 1.65

Independent wheat B and G genome origins in outcrossing Aegilops progenitor haplotypes. Mol Biol Evol (2006) 1.63

Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes. Mol Phylogenet Evol (2003) 1.51

Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences. Mol Phylogenet Evol (2001) 1.38

Dynamics of polyploid formation in Tragopogon (Asteraceae): recurrent formation, gene flow, and population structure. Evolution (2010) 1.20

Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets. Genome (2002) 1.17

Reticulate evolution, introgression, and intertribal gene capture in an allohexaploid grass. Syst Biol (2004) 1.09

Evaluating intraspecific "network" construction methods using simulated sequence data: do existing algorithms outperform the global maximum parsimony approach? Syst Biol (2005) 1.07

Phylogeny and evolutionary history of Leymus (Triticeae; Poaceae) based on a single-copy nuclear gene encoding plastid acetyl-CoA carboxylase. BMC Evol Biol (2009) 1.04

Multiple origins and nrDNA internal transcribed spacer homeologue evolution in the Glycine tomentella (Leguminosae) allopolyploid complex. Genetics (2004) 1.01

Gene capture from across the grass family in the allohexaploid Elymus repens (L.) Gould (Poaceae, Triticeae) as evidenced by ITS, GBSSI, and molecular cytogenetics. Mol Biol Evol (2010) 0.97

Molecular phylogeny of RPB2 gene reveals multiple origin, geographic differentiation of H genome, and the relationship of the Y genome to other genomes in Elymus species. Mol Phylogenet Evol (2008) 0.96

Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences. New Phytol (2006) 0.96

Genome constitutions of Hystrix patula, H. duthiei ssp. duthiei and H. duthiei ssp. longearistata (Poaceae: Triticeae) revealed by meiotic pairing behavior and genomic in-situ hybridization. Chromosome Res (2006) 0.91

Multiple origins of allopolyploid wheatgrass Elymus caninus revealed by RPB2, PepC and TrnD/T genes. Mol Phylogenet Evol (2012) 0.88

Genome constitution of the Australian hexaploid grass Elymus scabrus (Poaceae: Triticeae). Genome (1993) 0.85

Evolutionary dynamics of the Pgk1 gene in the polyploid genus Kengyilia (Triticeae: Poaceae) and its diploid relatives. PLoS One (2012) 0.84

Ubiquity of the St chloroplast genome in St-containing Triticeae polyploids. Genome (2000) 0.84

Distinct origin of the Y and St genome in Elymus species: evidence from the analysis of a large sample of St genome species using two nuclear genes. PLoS One (2011) 0.81

Evolution of Buchloë dactyloides based on cloning and sequencing of matK, rbcL, and cob genes from plastid and mitochondrial genomes. Genome (2005) 0.79

Differentiation in the Elymus dahuricus complex (Poaceae): evidence from grain proteins, DNA, and crossability. Hereditas (2001) 0.77

Phylogenetic relationships and Y genome origin in Elymus L. sensu lato (Triticeae; Poaceae) based on single-copy nuclear Acc1 and Pgk1 gene sequences. Mol Phylogenet Evol (2013) 0.77

Evolutionary pattern of rDNA following polyploidy in Leymus (Triticeae: Poaceae). Mol Phylogenet Evol (2014) 0.77