Published in Transl Res on July 08, 2015
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97
An obesity-associated gut microbiome with increased capacity for energy harvest. Nature (2006) 44.35
Microbial ecology: human gut microbes associated with obesity. Nature (2006) 36.98
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J (2012) 16.84
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med (2009) 16.02
Metabolic endotoxemia initiates obesity and insulin resistance. Diabetes (2007) 14.12
Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5. Science (2010) 12.54
A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature (2012) 11.68
A framework for human microbiome research. Nature (2012) 11.41
Gut flora in health and disease. Lancet (2003) 9.85
Predictors of progression from impaired glucose tolerance to NIDDM: an analysis of six prospective studies. Diabetes (1997) 8.96
Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci U S A (2009) 8.25
Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS One (2010) 6.48
Microbiota and SCFA in lean and overweight healthy subjects. Obesity (Silver Spring) (2009) 6.12
Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature (2013) 6.07
Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods. J Pediatr Gastroenterol Nutr (2000) 5.84
Human colonic microbiota associated with diet, obesity and weight loss. Int J Obes (Lond) (2008) 4.78
Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. Am J Clin Nutr (2011) 4.60
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience (2012) 3.24
Vitamin D supplementation reduces insulin resistance in South Asian women living in New Zealand who are insulin resistant and vitamin D deficient - a randomised, placebo-controlled trial. Br J Nutr (2009) 2.93
Energy intake is associated with endotoxemia in apparently healthy men. Am J Clin Nutr (2008) 2.77
Gut microbiome of the Hadza hunter-gatherers. Nat Commun (2014) 2.72
Executive summary: Standards of medical care in diabetes--2014. Diabetes Care (2014) 2.59
Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota. Gut (2011) 2.50
Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environ Microbiol (2011) 2.28
High-dose vitamin D supplementation in people with prediabetes and hypovitaminosis D. Diabetes Care (2012) 1.93
Molecular characterisation of the faecal microbiota in patients with type II diabetes. Curr Microbiol (2010) 1.92
Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study. BMC Med (2013) 1.71
Dietary fibre and incidence of type 2 diabetes in eight European countries: the EPIC-InterAct Study and a meta-analysis of prospective studies. Diabetologia (2015) 1.69
Dynamics and clinical evolution of bacterial gut microflora in extremely premature patients. J Pediatr (2010) 1.62
Consumption of cereal fiber, mixtures of whole grains and bran, and whole grains and risk reduction in type 2 diabetes, obesity, and cardiovascular disease. Am J Clin Nutr (2013) 1.58
Vitamin D receptor negatively regulates bacterial-stimulated NF-kappaB activity in intestine. Am J Pathol (2010) 1.57
Carbohydrate and fiber recommendations for individuals with diabetes: a quantitative assessment and meta-analysis of the evidence. J Am Coll Nutr (2004) 1.53
Human gut microbiota changes reveal the progression of glucose intolerance. PLoS One (2013) 1.51
Recruiting intergenerational African American males for biomedical research Studies: a major research challenge. J Natl Med Assoc (2011) 1.34
Low 25-hydroxyvitamin D and risk of type 2 diabetes: a prospective cohort study and metaanalysis. Clin Chem (2012) 1.33
Protective role of 1,25(OH)2 vitamin D3 in the mucosal injury and epithelial barrier disruption in DSS-induced acute colitis in mice. BMC Gastroenterol (2012) 1.32
Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity. Proc Natl Acad Sci U S A (2014) 1.31
Lactate metabolism by Veillonella parvula. J Bacteriol (1971) 1.30
Tipping elements in the human intestinal ecosystem. Nat Commun (2014) 1.25
The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases. ISME J (2012) 1.24
Gut microbiota in multiple sclerosis: possible influence of immunomodulators. J Investig Med (2015) 1.18
Diversity of human small intestinal Streptococcus and Veillonella populations. FEMS Microbiol Ecol (2013) 1.12
EFFECT OF HIGH-DOSE VITAMIN D REPLETION ON GLYCEMIC CONTROL IN AFRICAN-AMERICAN MALES WITH PREDIABETES AND HYPOVITAMINOSIS D. Endocr Pract (2015) 1.10
Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biol Evol (2011) 1.10
Dietary fat content and fiber type modulate hind gut microbial community and metabolic markers in the pig. PLoS One (2013) 1.03
Diet-induced alterations of host cholesterol metabolism are likely to affect the gut microbiota composition in hamsters. Appl Environ Microbiol (2012) 1.00
Pretreatment with the probiotic VSL#3 delays transition from inflammation to dysplasia in a rat model of colitis-associated cancer. Am J Physiol Gastrointest Liver Physiol (2011) 0.93
Subgingival biodiversity in subjects with uncontrolled type-2 diabetes and chronic periodontitis. J Periodontal Res (2012) 0.92
Lack of Vitamin D Receptor Causes Dysbiosis and Changes the Functions of the Murine Intestinal Microbiome. Clin Ther (2015) 0.91
Vitamin D role and use in prediabetes. Endocr Pract (2010) 0.91
Evidence for the gut microbiota short-chain fatty acids as key pathophysiological molecules improving diabetes. Mediators Inflamm (2014) 0.91
Glucose metabolism: focus on gut microbiota, the endocannabinoid system and beyond. Diabetes Metab (2014) 0.88
Evaluation of a brief questionnaire for assessing Barriers to Research Participation. Ethn Dis (2006) 0.87
Impact of diet in shaping gut microbiota revealed by a comparative study in infants during the six months of life. J Microbiol Biotechnol (2014) 0.87
Dietary patterns differently associate with inflammation and gut microbiota in overweight and obese subjects. PLoS One (2014) 0.86
The Vitamin D Receptor, Inflammatory Bowel Diseases, and Colon Cancer. Curr Colorectal Cancer Rep (2012) 0.85
Vitamin D and prebiotics may benefit the intestinal microbacteria and improve glucose homeostasis in prediabetes and type 2 diabetes. Endocr Pract (2013) 0.84
Vitamin D deficiency predisposes to adherent-invasive Escherichia coli-induced barrier dysfunction and experimental colonic injury. Inflamm Bowel Dis (2015) 0.81
Vitamin D, Vitamin D Receptor, and Tissue Barriers. Tissue Barriers (2013) 0.81
Low vitamin D status throughout life results in an inflammatory prone status but does not alter bone mineral or strength in healthy 3-month-old CD-1 male mice. Mol Nutr Food Res (2014) 0.80
Holobiont nutrition: considering the role of the gastrointestinal microbiota in the health benefits of whole grains. Gut Microbes (2013) 0.79