Published in Proc Natl Acad Sci U S A on September 18, 2015
Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes. Proc Natl Acad Sci U S A (2016) 0.82
Heterochromatin and genetic conflict. Proc Natl Acad Sci U S A (2016) 0.75
Improved assembly of noisy long reads by k-mer validation. Genome Res (2016) 0.75
Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci in Drosophila melanogaster. Genome Res (2017) 0.75
Convergent evolution of Y chromosome gene content in flies. Nat Commun (2017) 0.75
Neo-sex Chromosomes in the Monarch Butterfly, Danaus plexippus. G3 (Bethesda) (2017) 0.75
Cross-Species Y Chromosome Function Between Malaria Vectors of the Anopheles gambiae Species Complex. Genetics (2017) 0.75
The house fly Y Chromosome is young and minimally differentiated from its ancient X Chromosome partner. Genome Res (2017) 0.75
Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol (2013) 112.81
The genome sequence of Drosophila melanogaster. Science (2000) 74.32
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc (2012) 35.75
HyPhy: hypothesis testing using phylogenies. Bioinformatics (2004) 17.33
Estimating divergence times in large molecular phylogenies. Proc Natl Acad Sci U S A (2012) 13.49
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature (2003) 12.44
Simple methods for testing the molecular evolutionary clock hypothesis. Genetics (1993) 11.26
Statistical methods for detecting molecular adaptation. Trends Ecol Evol (2000) 10.10
Using GeneWise in the Drosophila annotation experiment. Genome Res (2000) 7.50
Non-Disjunction as Proof of the Chromosome Theory of Heredity. Genetics (1916) 6.28
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics (2006) 5.50
Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol (1984) 5.39
Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol Biol Evol (2003) 5.30
The degeneration of Y chromosomes. Philos Trans R Soc Lond B Biol Sci (2000) 5.22
Streaming fragment assignment for real-time analysis of sequencing experiments. Nat Methods (2012) 4.43
Selective sweep of a newly evolved sperm-specific gene in Drosophila. Nature (1998) 4.24
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Nat Biotechnol (2015) 3.66
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations. Nucleic Acids Res (2014) 3.12
Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Science (2007) 2.97
Genetic analysis of the brahma gene of Drosophila melanogaster and polytene chromosome subdivisions 72AB. Genetics (1994) 2.27
The Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Res (2010) 2.25
Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proc Natl Acad Sci U S A (2001) 2.09
The Genetic and Cytological Organization of the Y Chromosome of DROSOPHILA MELANOGASTER. Genetics (1981) 1.98
Y chromosomal fertility factors kl-2 and kl-3 of Drosophila melanogaster encode dynein heavy chain polypeptides. Proc Natl Acad Sci U S A (2000) 1.97
Low conservation of gene content in the Drosophila Y chromosome. Nature (2008) 1.72
A fertility region on the Y chromosome of Drosophila melanogaster encodes a dynein microtubule motor. Proc Natl Acad Sci U S A (1993) 1.56
Origin and evolution of Y chromosomes: Drosophila tales. Trends Genet (2009) 1.53
Structural genes on the Y chromosome of Drosophila melanogaster. Proc Natl Acad Sci U S A (1982) 1.46
Estimating divergence dates and substitution rates in the Drosophila phylogeny. Mol Biol Evol (2012) 1.39
The Release 6 reference sequence of the Drosophila melanogaster genome. Genome Res (2015) 1.31
Long-read, whole-genome shotgun sequence data for five model organisms. Sci Data (2014) 1.30
Mega-introns in the dynein gene DhDhc7(Y) on the heterochromatic Y chromosome give rise to the giant threads loops in primary spermatocytes of Drosophila hydei. Genetics (2000) 1.23
Centromeres from telomeres? The centromeric region of the Y chromosome of Drosophila melanogaster contains a tandem array of telomeric HeT-A- and TART-related sequences. Nucleic Acids Res (1999) 1.20
DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions. BMC Bioinformatics (2006) 1.18
Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res (2014) 1.15
Two new Y-linked genes in Drosophila melanogaster. Genetics (2008) 1.12
Is the Y chromosome of Drosophila an evolved supernumerary chromosome? Bioessays (1996) 1.02
Phylogeny of the Oriental Drosophila melanogaster species group: a multilocus reconstruction. Syst Biol (2002) 0.99
Evolution of gene sequence in response to chromosomal location. Genetics (2007) 0.97
Efficient identification of Y chromosome sequences in the human and Drosophila genomes. Genome Res (2013) 0.96
Genomic and cytological analysis of the Y chromosome of Drosophila melanogaster: telomere-derived sequences at internal regions. Chromosoma (2004) 0.94
Acquisition and amplification of a testis-expressed autosomal gene, SSL, by the Drosophila Y chromosome. Proc Natl Acad Sci U S A (1997) 0.90
Heterochromatic distribution of HeT-A- and TART-like sequences in several Drosophila species. Cytogenet Genome Res (2005) 0.85
Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome. G3 (Bethesda) (2015) 0.84
Positive and purifying selection on the Drosophila Y chromosome. Mol Biol Evol (2014) 0.83
Perturbation analysis of heterochromatin-mediated gene silencing and somatic inheritance. PLoS Genet (2010) 0.83
Inference of functional divergence among proteins when the evolutionary process is non-stationary. J Mol Evol (2013) 0.80
Drosophila RISC component VIG and its homolog Vig2 impact heterochromatin formation. PLoS One (2009) 0.79