Published in BMC Biotechnol on October 01, 2015
Transcript Polymorphism Rates in Soybean Seed Tissue Are Increased in a Single Transformant of Glycine max. Int J Plant Genomics (2016) 0.75
TopHat: discovering splice junctions with RNA-Seq. Bioinformatics (2009) 81.13
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res (2002) 76.95
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics (2009) 67.17
TM4: a free, open-source system for microarray data management and analysis. Biotechniques (2003) 38.02
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc (2012) 35.75
Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res (2011) 11.32
agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res (2010) 10.53
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics (2009) 10.30
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics (2013) 9.98
Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol (2010) 9.15
The sequence read archive. Nucleic Acids Res (2010) 7.97
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data. Genome Biol (2013) 4.67
A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinformatics (2013) 4.36
Transgeneration memory of stress in plants. Nature (2006) 3.67
Transgene-induced gene silencing in plants. Plant J (1998) 2.91
The involvement of cysteine proteases and protease inhibitor genes in the regulation of programmed cell death in plants. Plant Cell (1999) 2.87
A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae. Nucleic Acids Res (2012) 2.53
A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data. Am J Bot (2012) 2.44
Assessment of the health impact of GM plant diets in long-term and multigenerational animal feeding trials: a literature review. Food Chem Toxicol (2011) 1.96
Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops. Proc Natl Acad Sci U S A (2005) 1.75
Evaluation of genetically engineered crops using transcriptomic, proteomic, and metabolomic profiling techniques. Plant Physiol (2011) 1.74
Comparison of software packages for detecting differential expression in RNA-seq studies. Brief Bioinform (2013) 1.71
A combined proteome and transcriptome analysis of developing Medicago truncatula seeds: evidence for metabolic specialization of maternal and filial tissues. Mol Cell Proteomics (2007) 1.55
A metabolomic study of substantial equivalence of field-grown genetically modified wheat. Plant Biotechnol J (2006) 1.52
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates. Nucleic Acids Res (2013) 1.50
The mutational consequences of plant transformation. J Biomed Biotechnol (2006) 1.44
New insights into an old story: Agrobacterium-induced tumour formation in plants by plant transformation. EMBO J (2010) 1.42
A comprehensive characterization of single-copy T-DNA insertions in the Arabidopsis thaliana genome. Plant Mol Biol (2003) 1.37
Improved cotyledonary node method using an alternative explant derived from mature seed for efficient Agrobacterium-mediated soybean transformation. Plant Cell Rep (2005) 1.26
Plant serine proteases: biochemical, physiological and molecular features. Plant Physiol Biochem (2005) 1.16
Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion. Proc Natl Acad Sci U S A (2008) 1.13
Transgenesis has less impact on the transcriptome of wheat grain than conventional breeding. Plant Biotechnol J (2006) 1.12
Effect of transgenes on global gene expression in soybean is within the natural range of variation of conventional cultivars. J Agric Food Chem (2008) 1.09
Differential expression of soybean cysteine proteinase inhibitor genes during development and in response to wounding and methyl jasmonate. Plant Physiol (1996) 1.09
Using RNA-Seq to profile soybean seed development from fertilization to maturity. PLoS One (2013) 1.07
Flux of transcript patterns during soybean seed development. BMC Genomics (2010) 1.06
Deleterious mutation accumulation and the regeneration of genetic resources. Proc Natl Acad Sci U S A (1998) 1.05
Sequence database of 1172 T-DNA insertion sites in Arabidopsis activation-tagging lines that showed phenotypes in T1 generation. Plant J (2003) 0.96
Growth hormone: the expansion of available products and indications. Endocrinol Metab Clin North Am (2009) 0.93
Exploitation of molecular profiling techniques for GM food safety assessment. Curr Opin Biotechnol (2003) 0.93
Expression and immunogenicity of an Escherichia coli K99 fimbriae subunit antigen in soybean. Planta (2004) 0.92
Compositional equivalence of DAS-444Ø6-6 (AAD-12 + 2mEPSPS + PAT) herbicide-tolerant soybean and nontransgenic soybean. J Agric Food Chem (2013) 0.91
Active immunization using a single dose immunotherapeutic abates established EAE via IL-10 and regulatory T cells. Eur J Immunol (2010) 0.91
Covering chemical diversity of genetically-modified tomatoes using metabolomics for objective substantial equivalence assessment. PLoS One (2011) 0.90
High-level expression of basic fibroblast growth factor in transgenic soybean seeds and characterization of its biological activity. Biotechnol Lett (2006) 0.89
Sublethal staphylococcal enterotoxin B challenge model in pigs to evaluate protection following immunization with a soybean-derived vaccine. Clin Vaccine Immunol (2012) 0.88
New insights on proteomics of transgenic soybean seeds: evaluation of differential expressions of enzymes and proteins. Anal Bioanal Chem (2011) 0.84
Comparison of human growth hormone products' cost in pediatric and adult patients. A budgetary impact model. Manag Care (2007) 0.83
Recombinant expression of homodimeric 660 kDa human thyroglobulin in soybean seeds: an alternative source of human thyroglobulin. Plant Cell Rep (2011) 0.83
Metabolomics of genetically modified crops. Int J Mol Sci (2014) 0.82
Soybean seeds: a practical host for the production of functional subunit vaccines. Biomed Res Int (2014) 0.80
Host limits to accurate human growth hormone production in multiple plant systems. Biotechnol Bioeng (2005) 0.79
Assessment of pleiotropic transcriptome perturbations in Arabidopsis engineered for indirect insect defence. BMC Plant Biol (2014) 0.78
Endogenous allergen upregulation: transgenic vs. traditionally bred crops. Food Chem Toxicol (2011) 0.78
Transgenic soybeans and soybean protein analysis: an overview. J Agric Food Chem (2013) 0.77
Establishing substantial equivalence: metabolomics. Methods Mol Biol (2009) 0.77
Structural and functional analysis of various globulin proteins from soy seed. Crit Rev Food Sci Nutr (2015) 0.76
Compositional equivalency of RNAi-mediated virus-resistant transgenic soybean and its nontransgenic counterpart. J Agric Food Chem (2014) 0.75