Published in Nat Rev Mol Cell Biol on November 04, 2015
Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon. Plant Cell (2016) 1.13
Exaptive origins of regulated mRNA decay in eukaryotes. Bioessays (2016) 0.90
Plant dicer-like proteins: double-stranded RNA-cleaving enzymes for small RNA biogenesis. J Plant Res (2016) 0.84
The Legume miR1514a modulates a NAC transcription factor transcript to trigger phasiRNA formation in response to drought. J Exp Bot (2016) 0.83
Water-deficit stress-responsive microRNAs and their targets in four durum wheat genotypes. Funct Integr Genomics (2016) 0.83
Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives. Biology (Basel) (2016) 0.80
Double-stranded RNA-binding protein DRB3 negatively regulates anthocyanin biosynthesis by modulating PAP1 expression in Arabidopsis thaliana. J Plant Res (2016) 0.78
Integration of omics approaches to understand oil/protein content during seed development in oilseed crops. Plant Cell Rep (2016) 0.78
DNA Methylation Influences the Expression of DICER-LIKE4 Isoforms, Which Encode Proteins of Alternative Localization and Function. Plant Cell (2016) 0.78
The pivotal role of small non-coding RNAs in the regulation of seed development. Plant Cell Rep (2017) 0.78
The Accumulation of miRNAs Differentially Modulated by Drought Stress Is Affected by Grafting in Grapevine. Plant Physiol (2017) 0.77
DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening. Front Plant Sci (2016) 0.77
Long noncoding miRNA gene represses wheat β-diketone waxes. Proc Natl Acad Sci U S A (2017) 0.77
Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis. Front Plant Sci (2016) 0.77
Lipid flippases promote antiviral silencing and the biogenesis of viral and host siRNAs in Arabidopsis. Proc Natl Acad Sci U S A (2017) 0.77
Paramutation and related phenomena in diverse species. Nat Rev Genet (2016) 0.76
Cotton Leaf Curl Multan Virus-Derived Viral Small RNAs Can Target Cotton Genes to Promote Viral Infection. Front Plant Sci (2016) 0.76
Fast-forward generation of effective artificial small RNAs for enhanced antiviral defense in plants. RNA Dis (2016) 0.76
Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants. BMC Genomics (2016) 0.75
Shortcuts to a functional adipose tissue: The role of small non-coding RNAs. Redox Biol (2017) 0.75
An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids. BMC Bioinformatics (2017) 0.75
Small RNAs from Bemisia tabaci Are Transferred to Solanum lycopersicum Phloem during Feeding. Front Plant Sci (2016) 0.75
Thiourea priming enhances salt tolerance through co-ordinated regulation of microRNAs and hormones in Brassica juncea. Sci Rep (2017) 0.75
Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar "Svilena". BMC Plant Biol (2016) 0.75
Artificial MicroRNA-Based Specific Gene Silencing of Grain Hardness Genes in Polyploid Cereals Appeared to Be Not Stable Over Transgenic Plant Generations. Front Plant Sci (2017) 0.75
Considerations and complications of mapping small RNA high-throughput data to transposable elements. Mob DNA (2017) 0.75
Generation of an integrated Hieracium genomic and transcriptomic resource enables exploration of small RNA pathways during apomixis initiation. BMC Biol (2016) 0.75
A complex of Arabidopsis DRB proteins can impair dsRNA processing. RNA (2017) 0.75
RNA Interference (RNAi) as a Potential Tool for Control of Mycotoxin Contamination in Crop Plants: Concepts and Considerations. Front Plant Sci (2017) 0.75
Accurate Chromosome Segregation at First Meiotic Division Requires AGO4, a Protein Involved in RNA-Dependent DNA Methylation in Arabidopsis thaliana. Genetics (2016) 0.75
Genome-wide analysis of single non-templated nucleotides in plant endogenous siRNAs and miRNAs. Nucleic Acids Res (2016) 0.75
Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8. Plant Physiol (2016) 0.75
The Influence of Genotype and Environment on Small RNA Profiles in Grapevine Berry. Front Plant Sci (2016) 0.75
Insights into the function of the phasiRNA-triggering miR1514 in response to stress in legumes. Plant Signal Behav (2017) 0.75
A Reliable Protocol for In situ microRNAs Detection in Feeding Sites Induced by Root-Knot Nematodes. Front Plant Sci (2016) 0.75
Uptake and impact of natural diet-derived small RNA in invertebrates: Implications for ecology and agriculture. RNA Biol (2016) 0.75
Identification of Conserved and Novel MicroRNAs in Blueberry. Front Plant Sci (2017) 0.75
Host-Pathogen interactions modulated by small RNAs. RNA Biol (2017) 0.75
An Optimized Transient Dual Luciferase Assay for Quantifying MicroRNA Directed Repression of Targeted Sequences. Front Plant Sci (2017) 0.75
Argonaute 8 (AGO8) mediates the elicitation of primary defense against herbivory. Plant Physiol (2017) 0.75
Small RNA-Sequencing Links Physiological Changes and RdDM Process to Vegetative-to-Floral Transition in Apple. Front Plant Sci (2017) 0.75
Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima. Mol Ecol (2017) 0.75
Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet (2010) 15.70
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell (2005) 14.81
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev (2006) 11.71
A biochemical framework for RNA silencing in plants. Genes Dev (2003) 9.95
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell (2008) 9.02
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell (2005) 7.58
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One (2007) 7.34
Methylation as a crucial step in plant microRNA biogenesis. Science (2005) 7.16
Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet (2007) 7.14
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet (2004) 6.34
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell (2009) 6.05
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev (2005) 6.04
TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation. Cell (2009) 5.99
Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis. Curr Biol (2005) 5.99
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet (2006) 5.81
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell (2008) 5.73
A two-hit trigger for siRNA biogenesis in plants. Cell (2006) 5.60
Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol (2005) 4.98
DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci (2002) 4.72
Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells. Nat Struct Mol Biol (2009) 4.41
Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet (2010) 4.27
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells. Science (2010) 3.57
piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline. Cell (2012) 3.48
Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science (2008) 3.46
A link between RNA metabolism and silencing affecting Arabidopsis development. Dev Cell (2008) 3.39
HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower. Development (2002) 3.24
A link between mRNA turnover and RNA interference in Arabidopsis. Science (2004) 3.22
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature (2010) 3.19
RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat Rev Genet (2013) 3.17
The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins. Plant Cell Physiol (2008) 3.15
A role for small RNAs in DNA double-strand break repair. Cell (2012) 3.15
Evolution and functional diversification of MIRNA genes. Plant Cell (2011) 3.07
Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature (2009) 3.01
Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol (2011) 2.94
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat Rev Genet (2014) 2.89
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J (2007) 2.79
RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing. Cell (2007) 2.78
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 2.74
DNA methylation mediated by a microRNA pathway. Mol Cell (2010) 2.74
RNA interference guides histone modification during the S phase of chromosomal replication. Curr Biol (2008) 2.72
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev (2011) 2.66
miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis. Nature (2014) 2.61
Classification and comparison of small RNAs from plants. Annu Rev Plant Biol (2013) 2.60
Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Cell (2014) 2.58
Parent-dependent loss of gene silencing during interspecies hybridization. Curr Biol (2006) 2.58
Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol Biol (2005) 2.56
Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature (2010) 2.53
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell (2010) 2.51
Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair. Cell (2011) 2.50
Pattern formation via small RNA mobility. Genes Dev (2009) 2.50
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells. Nature (2014) 2.49
Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell (2011) 2.45
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. Genome Res (2011) 2.34
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature (2011) 2.33
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell (2012) 2.32
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell (2012) 2.29
A novel class of bacteria-induced small RNAs in Arabidopsis. Genes Dev (2007) 2.29
An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis. Mol Cell (1999) 2.27
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res (2009) 2.27
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. Plant Cell (2010) 2.22
Vive la différence: biogenesis and evolution of microRNAs in plants and animals. Genome Biol (2011) 2.21
The yeast protein Arc1p binds to tRNA and functions as a cofactor for the methionyl- and glutamyl-tRNA synthetases. EMBO J (1996) 2.20
Site-specific DICER and DROSHA RNA products control the DNA-damage response. Nature (2012) 2.20
RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2009) 2.19
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell (2012) 2.19
Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors. Plant Cell (2007) 2.11
Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs. Cell (2012) 2.09
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc Natl Acad Sci U S A (2009) 2.08
qiRNA is a new type of small interfering RNA induced by DNA damage. Nature (2009) 2.06
Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection. Plant Cell (2010) 2.02
Arabidopsis Argonaute 2 regulates innate immunity via miRNA393(∗)-mediated silencing of a Golgi-localized SNARE gene, MEMB12. Mol Cell (2011) 2.01
Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs. EMBO J (2011) 1.98
A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice. Plant Cell (2007) 1.97
The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell (2011) 1.95
Stalled spliceosomes are a signal for RNAi-mediated genome defense. Cell (2013) 1.94
CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs. Cell (2009) 1.94
Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell (2012) 1.91
Genomic and epigenetic insights into the molecular bases of heterosis. Nat Rev Genet (2013) 1.87
Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res (2009) 1.84
Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet (2005) 1.83
Chromatin conversations: mechanisms and implications of paramutation. Nat Rev Genet (2004) 1.83
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature (2013) 1.82
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science (2012) 1.80
RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature (2011) 1.79
MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis. Genes Dev (2010) 1.79
Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice. Plant Physiol (2005) 1.77
Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nat Genet (2005) 1.77
Dual coding of siRNAs and miRNAs by plant transposable elements. RNA (2008) 1.76
Modifications of small RNAs and their associated proteins. Cell (2010) 1.69
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell (2013) 1.69
Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol (2008) 1.68
Production of viable gametes without meiosis in maize deficient for an ARGONAUTE protein. Plant Cell (2011) 1.67
Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res (2008) 1.66
Splicing factors facilitate RNAi-directed silencing in fission yeast. Science (2008) 1.65
The diversity, biogenesis, and activities of endogenous silencing small RNAs in Arabidopsis. Annu Rev Plant Biol (2014) 1.60
Plant secondary siRNA production determined by microRNA-duplex structure. Proc Natl Acad Sci U S A (2012) 1.59
Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas. Proc Natl Acad Sci U S A (2010) 1.58
The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs. Plant Physiol (2013) 1.56
Protection of germline gene expression by the C. elegans Argonaute CSR-1. Dev Cell (2013) 1.55