Published in PLoS One on November 25, 2015
Effects of resveratrol, curcumin, berberine and other nutraceuticals on aging, cancer development, cancer stem cells and microRNAs. Aging (Albany NY) (2017) 0.79
Identification of a novel transcript isoform of the TTLL12 gene in human cancers. Oncol Rep (2016) 0.75
A Screen for Key Genes and Pathways Involved in High-Quality Brush Hair in the Yangtze River Delta White Goat. PLoS One (2017) 0.75
DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol (2003) 84.79
Differential expression analysis for sequence count data. Genome Biol (2010) 64.56
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol (2013) 32.42
HTSeq--a Python framework to work with high-throughput sequencing data. Bioinformatics (2014) 23.22
Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res (2013) 15.13
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics (2009) 14.83
Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat Biotechnol (2012) 14.01
The Gene Ontology project in 2008. Nucleic Acids Res (2007) 11.71
NF-kappaB activation by tumour necrosis factor requires the Akt serine-threonine kinase. Nature (1999) 10.48
Analysis and design of RNA sequencing experiments for identifying isoform regulation. Nat Methods (2010) 10.13
Nova regulates brain-specific splicing to shape the synapse. Nat Genet (2005) 6.58
Detecting differential usage of exons from RNA-seq data. Genome Res (2012) 6.34
A role for ATR in the DNA damage-induced phosphorylation of p53. Genes Dev (1999) 6.34
Function of alternative splicing. Gene (2004) 5.95
A new method to measure the semantic similarity of GO terms. Bioinformatics (2007) 5.91
Structure of an IkappaBalpha/NF-kappaB complex. Cell (1998) 5.67
DNA damage triggers a prolonged p53-dependent G1 arrest and long-term induction of Cip1 in normal human fibroblasts. Genes Dev (1994) 4.64
Targeting the PI3K-AKT-mTOR pathway: progress, pitfalls, and promises. Curr Opin Pharmacol (2008) 3.41
GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics (2010) 3.20
Expression of bbc3, a pro-apoptotic BH3-only gene, is regulated by diverse cell death and survival signals. Proc Natl Acad Sci U S A (2001) 3.16
Abnormal structure and expression of p53 gene in human hepatocellular carcinoma. Proc Natl Acad Sci U S A (1990) 2.59
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Res (2010) 2.41
PERP, an apoptosis-associated target of p53, is a novel member of the PMP-22/gas3 family. Genes Dev (2000) 2.33
High serum interleukin-6 level predicts future hepatocellular carcinoma development in patients with chronic hepatitis B. Int J Cancer (2009) 2.03
p53 C-terminal phosphorylation by CHK1 and CHK2 participates in the regulation of DNA-damage-induced C-terminal acetylation. Mol Biol Cell (2005) 1.46
Berberine: new perspectives for old remedies. Biochem Pharmacol (2012) 1.45
Interleukin-8 serum levels in patients with hepatocellular carcinoma: correlations with clinicopathological features and prognosis. Clin Cancer Res (2003) 1.41
Cotranscriptional exon skipping in the genotoxic stress response. Nat Struct Mol Biol (2010) 1.39
Functional coupling of last-intron splicing and 3'-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage. Mol Cell Biol (2007) 1.33
Depletion of intrinsic expression of Interleukin-8 in prostate cancer cells causes cell cycle arrest, spontaneous apoptosis and increases the efficacy of chemotherapeutic drugs. Mol Cancer (2009) 1.31
p53 downstream target genes and tumor suppression: a classical view in evolution. Cell Death Differ (2006) 1.30
DiffSplice: the genome-wide detection of differential splicing events with RNA-seq. Nucleic Acids Res (2012) 1.28
Gene expression profiling of breast cancer cells in response to gemcitabine: NF-kappaB pathway activation as a potential mechanism of resistance. Breast Cancer Res Treat (2006) 1.13
Anticancer drugs affect the alternative splicing of Bcl-x and other human apoptotic genes. Mol Cancer Ther (2008) 1.08
SplicingCompass: differential splicing detection using RNA-seq data. Bioinformatics (2013) 1.07
Berberine inhibits human neuroblastoma cell growth through induction of p53-dependent apoptosis. Anticancer Res (2009) 1.07
Berberine induces p53-dependent cell cycle arrest and apoptosis of human osteosarcoma cells by inflicting DNA damage. Mutat Res (2008) 1.04
Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions. Nucleic Acids Res (2008) 1.03
Berberine. Altern Med Rev (2000) 1.02
Berberine inhibits p53-dependent cell growth through induction of apoptosis of prostate cancer cells. Int J Oncol (2009) 1.02
Transcriptional control by NF-κB: elongation in focus. Biochim Biophys Acta (2013) 0.98
Berberine, an epiphany against cancer. Molecules (2014) 0.95
Functional coupling of transcription and splicing. Gene (2012) 0.95
IL-6, a risk factor for hepatocellular carcinoma: FLLL32 inhibits IL-6-induced STAT3 phosphorylation in human hepatocellular cancer cells. Cell Cycle (2010) 0.94
A survey of software for genome-wide discovery of differential splicing in RNA-Seq data. Hum Genomics (2014) 0.92
Gene expression profiles of hepatoma cell line BEL-7402. Hepatogastroenterology (2003) 0.91
Berberine induces selective apoptosis through the AMPK‑mediated mitochondrial/caspase pathway in hepatocellular carcinoma. Mol Med Rep (2013) 0.87
Alternative splicing for diseases, cancers, drugs, and databases. ScientificWorldJournal (2013) 0.82
Calmodulin as a potential target by which berberine induces cell cycle arrest in human hepatoma Bel7402 cells. Chem Biol Drug Des (2013) 0.82
A recently evolved class of alternative 3'-terminal exons involved in cell cycle regulation by topoisomerase inhibitors. Nat Commun (2014) 0.78
Postprandial activation of p53-dependent DNA repair is modified by Mediterranean diet supplemented with coenzyme Q10 in elderly subjects. J Gerontol A Biol Sci Med Sci (2013) 0.77
Adenovirus-mediated p53 gene therapy in nasopharyngeal cancer. Int J Oncol (1997) 0.76