Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputum.

PubWeight™: 0.85‹?›

🔗 View Article (PMID 26715741)

Published in Proc Natl Acad Sci U S A on December 29, 2015

Authors

Sebastian H Kopf1, Alex L Sessions2, Elise S Cowley3, Carmen Reyes4, Lindsey Van Sambeek3, Yang Hu3, Victoria J Orphan5, Roberta Kato4, Dianne K Newman6

Author Affiliations

1: Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125; Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125; dkn@caltech.edu als@gps.caltech.edu sebastian.kopf@colorado.edu.
2: Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125; dkn@caltech.edu als@gps.caltech.edu sebastian.kopf@colorado.edu.
3: Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125;
4: Pediatric Pulmonology, Children's Hospital Los Angeles, Los Angeles, CA 90027.
5: Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125;
6: Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125; Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125; dkn@caltech.edu als@gps.caltech.edu sebastian.kopf@colorado.edu.

Articles cited by this

Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97

Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol (1990) 28.74

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A (2010) 19.48

The toxic shock syndrome exotoxin structural gene is not detectably transmitted by a prophage. Nature (1983) 19.44

Synthetic oligonucleotide probes deduced from amino acid sequence data. Theoretical and practical considerations. J Mol Biol (1985) 9.98

Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry (1993) 7.53

Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients. J Clin Invest (2002) 6.35

Iso- and anteiso-fatty acids in bacteria: biosynthesis, function, and taxonomic significance. Microbiol Rev (1991) 5.59

Fluorescent In situ hybridization allows rapid identification of microorganisms in blood cultures. J Clin Microbiol (2000) 3.73

Active starvation responses mediate antibiotic tolerance in biofilms and nutrient-limited bacteria. Science (2011) 3.66

Influence of growth rate on susceptibility to antimicrobial agents: biofilms, cell cycle, dormancy, and stringent response. Antimicrob Agents Chemother (1990) 3.38

Nutritional cues control Pseudomonas aeruginosa multicellular behavior in cystic fibrosis sputum. J Bacteriol (2007) 3.22

The protonmotive force is required for maintaining ATP homeostasis and viability of hypoxic, nonreplicating Mycobacterium tuberculosis. Proc Natl Acad Sci U S A (2008) 2.92

Microbial ecology of the cystic fibrosis lung. Microbiology (2007) 2.68

Failure to recover to baseline pulmonary function after cystic fibrosis pulmonary exacerbation. Am J Respir Crit Care Med (2010) 2.40

Metabolic regulation of mycobacterial growth and antibiotic sensitivity. PLoS Biol (2011) 2.04

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. ISME J (2013) 1.98

Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patients. J Clin Microbiol (2000) 1.91

Reduction of clofazimine by mycobacterial type 2 NADH:quinone oxidoreductase: a pathway for the generation of bactericidal levels of reactive oxygen species. J Biol Chem (2010) 1.80

Review: Staphylococcus aureus and MRSA in cystic fibrosis. J Cyst Fibros (2011) 1.72

Influence of growth rate on susceptibility to antimicrobial agents: modification of the cell envelope and batch and continuous culture studies. Antimicrob Agents Chemother (1990) 1.49

In situ growth rates and biofilm development of Pseudomonas aeruginosa populations in chronic lung infections. J Bacteriol (2007) 1.46

Persisters, persistent infections and the Yin-Yang model. Emerg Microbes Infect (2014) 1.44

Stochasticity of metabolism and growth at the single-cell level. Nature (2014) 1.44

Selection of direct transesterification as the preferred method for assay of fatty acid content of microalgae. Lipids (2010) 1.40

Impact of enhanced Staphylococcus DNA extraction on microbial community measures in cystic fibrosis sputum. PLoS One (2012) 1.40

Carbon and nitrogen assimilation in deep subseafloor microbial cells. Proc Natl Acad Sci U S A (2011) 1.40

Microbial maintenance: a critical review on its quantification. Microb Ecol (2007) 1.34

The effects of temperature and growth rate on the proportion of unsaturated fatty acids in bacterial lipids. J Gen Microbiol (1978) 1.28

Large D/H variations in bacterial lipids reflect central metabolic pathways. Proc Natl Acad Sci U S A (2009) 1.25

Double labeling of oligonucleotide probes for fluorescence in situ hybridization (DOPE-FISH) improves signal intensity and increases rRNA accessibility. Appl Environ Microbiol (2009) 1.22

Look@NanoSIMS--a tool for the analysis of nanoSIMS data in environmental microbiology. Environ Microbiol (2012) 1.20

Pharmacological uses and perspectives of heavy water and deuterated compounds. Can J Physiol Pharmacol (1999) 1.15

Analysis of antifading reagents for fluorescence microscopy. Cytometry (1995) 1.13

Coculture of Staphylococcus aureus with Pseudomonas aeruginosa Drives S. aureus towards Fermentative Metabolism and Reduced Viability in a Cystic Fibrosis Model. J Bacteriol (2015) 1.13

Isotope-ratio detection for gas chromatography. J Sep Sci (2006) 1.10

Metabolic processes account for the majority of the intracellular water in log-phase Escherichia coli cells as revealed by hydrogen isotopes. Biochemistry (2006) 1.08

Regulation of phenotypic heterogeneity permits Salmonella evasion of the host caspase-1 inflammatory response. Proc Natl Acad Sci U S A (2011) 1.08

Fatty acid biosynthesis in Pseudomonas aeruginosa is initiated by the FabY class of β-ketoacyl acyl carrier protein synthases. J Bacteriol (2012) 1.01

Statistical approach for comparison of the growth rates of five strains of Staphylococcus aureus. Appl Environ Microbiol (1995) 1.00

Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry. Mol Biosyst (2012) 0.99

Autotrophy as a predominant mode of carbon fixation in anaerobic methane-oxidizing microbial communities. Proc Natl Acad Sci U S A (2012) 0.98

Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells. Proc Natl Acad Sci U S A (2014) 0.98

Polymorphonuclear leukocytes restrict growth of Pseudomonas aeruginosa in the lungs of cystic fibrosis patients. Infect Immun (2014) 0.96

Assessing sub-seafloor microbial activity by combined stable isotope probing with deuterated water and 13C-bicarbonate. Environ Microbiol (2012) 0.96

Characterization of metabolically quiescent Leishmania parasites in murine lesions using heavy water labeling. PLoS Pathog (2015) 0.94

Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation. MBio (2015) 0.92

Pseudomonas aeruginosa directly shunts β-oxidation degradation intermediates into de novo fatty acid biosynthesis. J Bacteriol (2012) 0.90

Impact of Staphylococcus aureus on the pathogenesis of chronic cystic fibrosis lung disease. Int J Med Microbiol (2010) 0.89

The effect of FISH and CARD-FISH on the isotopic composition of (13)C- and (15)N-labeled Pseudomonas putida cells measured by nanoSIMS. Syst Appl Microbiol (2014) 0.84

Phenotypic resistance to antimicrobial agents. J Antimicrob Chemother (1985) 0.83

Heavy water and (15) N labelling with NanoSIMS analysis reveals growth rate-dependent metabolic heterogeneity in chemostats. Environ Microbiol (2015) 0.81

Memory effects in compound-specific D/H analysis by gas chromatography/pyrolysis/isotope-ratio mass spectrometry. Anal Chem (2008) 0.79

Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific. ACS Chem Biol (2013) 0.79

Denitrification by cystic fibrosis pathogens - Stenotrophomonas maltophilia is dormant in sputum. Int J Med Microbiol (2014) 0.79