Gene set enrichment and topological analyses based on interaction networks in pediatric acute lymphoblastic leukemia.

PubWeight™: 0.76‹?›

🔗 View Article (PMID 26788135)

Published in Oncol Lett on September 29, 2015

Authors

Shuxiang Sui1, Xin Wang1, Hua Zheng1, Hua Guo1, Tong Chen1, Dong-Mei Ji1

Author Affiliations

1: Department of Pediatrics, Shandong Dongying People's Hospital, Dongying, Shandong 257091, P.R. China.

Articles cited by this

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc (2009) 137.99

KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res (2000) 117.00

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics (2003) 82.89

Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74

Human acute myeloid leukemia is organized as a hierarchy that originates from a primitive hematopoietic cell. Nat Med (1997) 32.63

Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics (2010) 26.76

Exploring complex networks. Nature (2001) 21.06

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol (2003) 20.83

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett (2004) 11.00

STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res (2014) 10.79

Emergent properties of networks of biological signaling pathways. Science (1999) 9.93

Discovering statistically significant pathways in expression profiling studies. Proc Natl Acad Sci U S A (2005) 8.75

A lineage of myeloid cells independent of Myb and hematopoietic stem cells. Science (2012) 8.42

RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics (2006) 6.50

Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex. Neurochem Res (2004) 4.33

Integrated transcript and genome analyses reveal NKX2-1 and MEF2C as potential oncogenes in T cell acute lymphoblastic leukemia. Cancer Cell (2011) 2.89

EnrichNet: network-based gene set enrichment analysis. Bioinformatics (2012) 1.92

A novel gene, AF1q, fused to MLL in t(1;11) (q21;q23), is specifically expressed in leukemic and immature hematopoietic cells. Blood (1995) 1.48

Clinical significance of low levels of minimal residual disease at the end of remission induction therapy in childhood acute lymphoblastic leukemia. Blood (2010) 1.47

MicroRNAs in acute leukemia: from biological players to clinical contributors. Leukemia (2011) 1.26

TopoGSA: network topological gene set analysis. Bioinformatics (2010) 1.24

Integrating protein-protein interaction networks with phenotypes reveals signs of interactions. Nat Methods (2013) 1.19

Microarray-based cancer prediction using single genes. BMC Bioinformatics (2011) 1.16

Distinct B-cell lineage commitment distinguishes adult bone marrow hematopoietic stem cells. Proc Natl Acad Sci U S A (2012) 1.15

Pediatric acute lymphoblastic leukemia. Hematology Am Soc Hematol Educ Program (2003) 1.13

Extending pathways and processes using molecular interaction networks to analyse cancer genome data. BMC Bioinformatics (2010) 1.12

A novel ligand for CD44 is serglycin, a hematopoietic cell lineage-specific proteoglycan. Possible involvement in lymphoid cell adherence and activation. J Biol Chem (1995) 1.06

Leukemia inhibitory factor (LIF)-dependent, pluripotent stem cells established from inner cell mass of porcine embryos. J Biol Chem (2011) 1.05

An empirical Bayesian approach for identifying differential coexpression in high-throughput experiments. Biometrics (2011) 1.00

MIR29B regulates expression of MLLT11 (AF1Q), an MLL fusion partner, and low MIR29B expression associates with adverse cytogenetics and poor overall survival in AML. Br J Haematol (2011) 0.97

R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression. Bioinformatics (2012) 0.95

JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks. Bioinformatics (2013) 0.90

Microarray detection of multiple recurring submicroscopic chromosomal aberrations in pediatric T-cell acute lymphoblastic leukemia. Leukemia (2011) 0.85

Impact of LIF (leukemia inhibitory factor) expression in malignant melanoma. Exp Mol Pathol (2013) 0.84

A three-way translocation of MLL, MLLT11, and the novel reciprocal partner gene MYO18A in a child with acute myeloid leukemia. Cancer Genet (2012) 0.82

AF1q/MLLT11 regulates the emergence of human prothymocytes through cooperative interaction with the Notch signaling pathway. Blood (2011) 0.82

Efficient shortest-path-tree computation in network routing based on pulse-coupled neural networks. IEEE Trans Cybern (2012) 0.79

Sequential monitoring of minimal residual disease in acute lymphoblastic leukemia: 7-year experience in a pediatric hematology/oncology unit. Leuk Lymphoma (2010) 0.79

Acute lymphoblastic leukemia in low and middle-income countries: disease characteristics and treatment results. Curr Opin Oncol (2014) 0.78

Cushing syndrome related to leukemic infiltration of the central nervous system: a case report and a possible role of LIF. J Pediatr Endocrinol Metab (2013) 0.76

Protein-spanning water networks and implications for prediction of protein-protein interactions mediated through hydrophobic effects. Proteins (2014) 0.76

Retracted Gene expression profiles on predicting protein interaction network and exploring of new treatments for lung cancer. Mol Biol Rep (2014) 0.76