Published in Database (Oxford) on April 05, 2016
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res (2016) 1.02
Comprehensive landscape of subtype-specific coding and non-coding RNA transcripts in breast cancer. Oncotarget (2016) 0.75
Heterozygous connexin 50 mutation affects metabolic syndrome attributes in spontaneously hypertensive rat. Lipids Health Dis (2016) 0.75
FocusHeuristics - expression-data-driven network optimization and disease gene prediction. Sci Rep (2017) 0.75
Myosin-I molecular motors at a glance. J Cell Sci (2016) 0.75
Elucidating tissue specific genes using the Benford distribution. BMC Genomics (2016) 0.75
Last rolls of the yoyo: Assessing the human canonical protein count. F1000Res (2017) 0.75
Resilient protein co-expression network in male orbitofrontal cortex layer 2/3 during human aging. Neurobiol Aging (2017) 0.75
Loss-of-Function Variants in MYLK Cause Recessive Megacystis Microcolon Intestinal Hypoperistalsis Syndrome. Am J Hum Genet (2017) 0.75
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol (2014) 27.48
Global quantification of mammalian gene expression control. Nature (2011) 22.36
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res (2012) 13.14
Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res (2013) 11.67
BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol (2009) 11.17
STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res (2014) 10.79
The Genotype-Tissue Expression (GTEx) project. Nat Genet (2013) 10.77
Proteomics. Tissue-based map of the human proteome. Science (2015) 10.21
Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res (2010) 9.09
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet (2012) 8.55
Ensembl 2015. Nucleic Acids Res (2014) 8.30
A draft map of the human proteome. Nature (2014) 6.58
Mass-spectrometry-based draft of the human proteome. Nature (2014) 6.32
GeneCards Version 3: the human gene integrator. Database (Oxford) (2010) 6.05
Deep proteome and transcriptome mapping of a human cancer cell line. Mol Syst Biol (2011) 5.48
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics (2004) 4.88
Global signatures of protein and mRNA expression levels. Mol Biosyst (2009) 4.43
Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE. Nucleic Acids Res (2003) 4.29
Human genomics. The human transcriptome across tissues and individuals. Science (2015) 3.53
Defining functional DNA elements in the human genome. Proc Natl Acad Sci U S A (2014) 3.35
Human housekeeping genes, revisited. Trends Genet (2013) 2.95
PaxDb, a database of protein abundance averages across all three domains of life. Mol Cell Proteomics (2012) 2.93
The human proteome project: current state and future direction. Mol Cell Proteomics (2011) 2.34
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome. Nat Biotechnol (2012) 2.14
Analysis of high accuracy, quantitative proteomics data in the MaxQB database. Mol Cell Proteomics (2012) 1.81
Widespread ectopic expression of olfactory receptor genes. BMC Genomics (2006) 1.80
The coming age of complete, accurate, and ubiquitous proteomes. Mol Cell (2013) 1.77
Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis. PLoS One (2011) 1.53
GeneDecks: paralog hunting and gene-set distillation with GeneCards annotation. OMICS (2009) 1.51
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. Proteomics (2015) 1.44
GIFtS: annotation landscape analysis with GeneCards. BMC Bioinformatics (2009) 1.33
What is the total number of protein molecules per cell volume? A call to rethink some published values. Bioessays (2013) 1.28
Sharing and Specificity of Co-expression Networks across 35 Human Tissues. PLoS Comput Biol (2015) 1.27
Analyzing the first drafts of the human proteome. J Proteome Res (2014) 1.27
COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database (Oxford) (2014) 1.16
Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines. Proteomics (2015) 1.14
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res (2014) 1.14
MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data. OMICS (2014) 1.09
The TissueNet database of human tissue protein-protein interactions. Nucleic Acids Res (2012) 1.07
Next-generation analysis of gene expression regulation--comparing the roles of synthesis and degradation. Mol Biosyst (2015) 1.06
A Scalable Approach for Protein False Discovery Rate Estimation in Large Proteomic Data Sets. Mol Cell Proteomics (2015) 1.04
MalaCards: A Comprehensive Automatically-Mined Database of Human Diseases. Curr Protoc Bioinformatics (2014) 1.02
LIP index for peptide classification using MS/MS and SEQUEST search via logistic regression. OMICS (2004) 1.01
Biostatistical approaches for the reconstruction of gene co-expression networks based on transcriptomic data. Brief Funct Genomics (2013) 0.97
Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics. Curr Protoc Bioinformatics (2014) 0.96
PathCards: multi-source consolidation of human biological pathways. Database (Oxford) (2015) 0.96
In silico estimation of translation efficiency in human cell lines: potential evidence for widespread translational control. PLoS One (2013) 0.91
Comprehensive comparison of large-scale tissue expression datasets. PeerJ (2015) 0.90
GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data. OMICS (2016) 0.87
Beyond protein expression, MOPED goes multi-omics. Nucleic Acids Res (2014) 0.85
High-resolution mapping of protein concentration reveals principles of proteome architecture and adaptation. Cell Rep (2014) 0.83
Recent Advances in the Chromosome-Centric Human Proteome Project: Missing Proteins in the Spot Light. J Proteome Res (2015) 0.78
Can "normal" protein expression ranges be estimated with high-throughput proteomics? J Proteome Res (2015) 0.76