Published in ISME J on May 03, 2016
RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea. MBio (2017) 0.76
Bioinformatic Analysis Reveals Archaeal tRNA(Tyr) and tRNA(Trp) Identities in Bacteria. Life (Basel) (2017) 0.76
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol (2017) 0.76
RubisCO selection using the vigorously aerobic and metabolically versatile bacterium Ralstonia eutropha. FEBS J (2016) 0.75
Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation. Sci Rep (2017) 0.75
The Arnon-Buchanan cycle: a retrospective, 1966-2016. Photosynth Res (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res (2000) 117.00
Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97
KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res (2011) 30.20
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics (2014) 28.04
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res (2012) 19.48
ProtTest: selection of best-fit models of protein evolution. Bioinformatics (2005) 19.16
UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics (2007) 17.43
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol (2007) 14.96
Infernal 1.0: inference of RNA alignments. Bioinformatics (2009) 12.98
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics (2012) 11.56
Light-dependent utilization of organic compounds and photoproduction of molecular hydrogen by photosynthetic bacteria; relationships with nitrogen metabolism. Arch Biochem Biophys (1961) 8.38
Community-wide analysis of microbial genome sequence signatures. Genome Biol (2009) 3.96
Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science (2012) 3.39
Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria. Appl Environ Microbiol (2000) 2.44
Predominant archaea in marine sediments degrade detrital proteins. Nature (2013) 2.41
Unusual biology across a group comprising more than 15% of domain Bacteria. Nature (2015) 2.34
A global two component signal transduction system that integrates the control of photosynthesis, carbon dioxide assimilation, and nitrogen fixation. Proc Natl Acad Sci U S A (1996) 2.04
Archaeal type III RuBisCOs function in a pathway for AMP metabolism. Science (2007) 1.99
Gene and translation initiation site prediction in metagenomic sequences. Bioinformatics (2012) 1.92
Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs. Microbiol Mol Biol Rev (2007) 1.89
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nat Commun (2013) 1.80
Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. MBio (2013) 1.70
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome (2013) 1.69
Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria. Proc Natl Acad Sci U S A (2010) 1.63
Distinct form I, II, III, and IV Rubisco proteins from the three kingdoms of life provide clues about Rubisco evolution and structure/function relationships. J Exp Bot (2008) 1.55
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. Proc Natl Acad Sci U S A (2013) 1.52
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Curr Biol (2015) 1.40
Complementation analysis and regulation of CO2 fixation gene expression in a ribulose 1,5-bisphosphate carboxylase-oxygenase deletion strain of Rhodospirillum rubrum. J Bacteriol (1993) 1.40
Diverse uncultivated ultra-small bacterial cells in groundwater. Nat Commun (2015) 1.34
Synthesis of catalytically active form III ribulose 1,5-bisphosphate carboxylase/oxygenase in archaea. J Bacteriol (2003) 1.29
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle. Proc Natl Acad Sci U S A (2014) 1.26
Positive and negative selection of mutant forms of prokaryotic (cyanobacterial) ribulose-1,5-bisphosphate carboxylase/oxygenase. J Mol Biol (2003) 1.23
Modified pathway to synthesize ribulose 1,5-bisphosphate in methanogenic archaea. J Bacteriol (2004) 1.13
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. ISME J (2014) 1.12
Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics. Nat Protoc (2014) 1.10
Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria. Microbiome (2015) 1.09
RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO. J Exp Bot (2008) 1.05
Substrate-induced assembly of Methanococcoides burtonii D-ribulose-1,5-bisphosphate carboxylase/oxygenase dimers into decamers. J Biol Chem (2009) 1.05
Substitutions at methionine 295 of Archaeoglobus fulgidus ribulose-1,5-bisphosphate carboxylase/oxygenase affect oxygen binding and CO2/O2 specificity. J Biol Chem (2006) 1.01
A Rubisco mutant that confers growth under a normally "inhibitory" oxygen concentration. Biochemistry (2009) 0.90
"Candidatus Sonnebornia yantaiensis", a member of candidate division OD1, as intracellular bacteria of the ciliated protist Paramecium bursaria (Ciliophora, Oligohymenophorea). Syst Appl Microbiol (2013) 0.89
On the Origin of Heterotrophy. Trends Microbiol (2015) 0.89
Structure-function studies with the unique hexameric form II ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Rhodopseudomonas palustris. J Biol Chem (2014) 0.86
Interactive control of Rhodobacter capsulatus redox-balancing systems during phototrophic metabolism. J Bacteriol (2001) 0.86
Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway. J Bacteriol (2012) 0.86
Classifying the uncultivated microbial majority: A place for metagenomic data in the Candidatus proposal. Syst Appl Microbiol (2015) 0.85
A pentose bisphosphate pathway for nucleoside degradation in Archaea. Nat Chem Biol (2015) 0.85
Carbon dioxide fixation in 'Archaeoglobus lithotrophicus': are there multiple autotrophic pathways? FEMS Microbiol Lett (2011) 0.81
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. ISME J (2014) 1.12
Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages. Environ Microbiol (2015) 0.93
Aquifer environment selects for microbial species cohorts in sediment and groundwater. ISME J (2015) 0.81
Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants. ISME J (2016) 0.80
New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11. ISME J (2016) 0.79
High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils. Environ Microbiol (2017) 0.76
RubisCO selection using the vigorously aerobic and metabolically versatile bacterium Ralstonia eutropha. FEBS J (2016) 0.75