Published in Science on February 16, 2007
Autotrophic carbon fixation in archaea. Nat Rev Microbiol (2010) 2.36
The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism. J Bacteriol (2008) 2.08
Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs. Microbiol Mol Biol Rev (2007) 1.89
Ecological aspects of the distribution of different autotrophic CO2 fixation pathways. Appl Environ Microbiol (2011) 1.86
Metabolism of halophilic archaea. Extremophiles (2008) 1.75
Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. MBio (2013) 1.70
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. Genome Biol (2009) 1.69
Advancing our understanding and capacity to engineer nature's CO2-sequestering enzyme, Rubisco. Plant Physiol (2010) 1.68
The modern concept of the procaryote. J Bacteriol (2009) 1.64
Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms. Philos Trans R Soc Lond B Biol Sci (2008) 1.63
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. Proc Natl Acad Sci U S A (2013) 1.52
Shuttle vector expression in Thermococcus kodakaraensis: contributions of cis elements to protein synthesis in a hyperthermophilic archaeon. Appl Environ Microbiol (2008) 1.40
GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent. Proc Natl Acad Sci U S A (2009) 1.38
Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation. Microbiol Mol Biol Rev (2014) 1.31
Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. J Bacteriol (2008) 1.27
Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis. J Bacteriol (2008) 1.23
Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology. Appl Environ Microbiol (2009) 1.16
Pantoate kinase and phosphopantothenate synthetase, two novel enzymes necessary for CoA biosynthesis in the Archaea. J Biol Chem (2009) 1.14
Polarity in archaeal operon transcription in Thermococcus kodakaraensis. J Bacteriol (2008) 1.11
Genetics Techniques for Thermococcus kodakarensis. Front Microbiol (2012) 1.06
Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME J (2010) 1.05
Substrate-induced assembly of Methanococcoides burtonii D-ribulose-1,5-bisphosphate carboxylase/oxygenase dimers into decamers. J Biol Chem (2009) 1.05
Proteome analyses of hydrogen-producing hyperthermophilic archaeon Thermococcus onnurineus NA1 in different one-carbon substrate culture conditions. Mol Cell Proteomics (2012) 0.99
The evolution of photosynthesis...again? Philos Trans R Soc Lond B Biol Sci (2008) 0.95
Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park. ISME J (2013) 0.93
Archaeal aIF2B interacts with eukaryotic translation initiation factors eIF2alpha and eIF2Balpha: Implications for aIF2B function and eIF2B regulation. J Mol Biol (2009) 0.92
A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T. BMC Genomics (2012) 0.91
Complete genome sequence of Ferroglobus placidus AEDII12DO. Stand Genomic Sci (2011) 0.91
Archaeal ubiquitin-like SAMP3 is isopeptide-linked to proteins via a UbaA-dependent mechanism. Mol Cell Proteomics (2013) 0.90
Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen. ISME J (2016) 0.88
Molecular characterization of the Calvin cycle enzyme phosphoribulokinase in the stramenopile alga Vaucheria litorea and the plastid hosting mollusc Elysia chlorotica. Mol Plant (2009) 0.88
Structural and functional similarities between a ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-like protein from Bacillus subtilis and photosynthetic RuBisCO. J Biol Chem (2009) 0.87
Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway. J Bacteriol (2012) 0.86
Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1. J Biol Chem (2012) 0.84
Engineering of a type III rubisco from a hyperthermophilic archaeon in order to enhance catalytic performance in mesophilic host cells. Appl Environ Microbiol (2007) 0.84
Molecular bases of thermophily in hyperthermophiles. Proc Jpn Acad Ser B Phys Biol Sci (2011) 0.83
Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin. ISME J (2014) 0.83
A unique structural domain in Methanococcoides burtonii ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) acts as a small subunit mimic. J Biol Chem (2017) 0.82
Identification of key components in the energy metabolism of the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus by transcriptome analyses. Front Microbiol (2014) 0.82
RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria. ISME J (2016) 0.82
Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea. Nat Microbiol (2016) 0.81
Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile. J Biol Chem (2010) 0.80
Ferredoxin:thioredoxin reductase (FTR) links the regulation of oxygenic photosynthesis to deeply rooted bacteria. Planta (2012) 0.80
Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide. J Bacteriol (2011) 0.79
An uncharacterized member of the ribokinase family in Thermococcus kodakarensis exhibits myo-inositol kinase activity. J Biol Chem (2013) 0.78
Metabolic traits of an uncultured archaeal lineage -MSBL1- from brine pools of the Red Sea. Sci Rep (2016) 0.78
A "footprint" of plant carbon fixation cycle functions during the development of a heterotrophic fungus. Sci Rep (2015) 0.77
Conserved active site cysteine residue of archaeal THI4 homolog is essential for thiamine biosynthesis in Haloferax volcanii. BMC Microbiol (2014) 0.77
A peptide adhesive molded by magnesium glues Rubisco's subunits together. J Biol Chem (2017) 0.75
Proteomic Insights into Sulfur Metabolism in the Hydrogen-Producing Hyperthermophilic Archaeon Thermococcus onnurineus NA1. Int J Mol Sci (2015) 0.75
Physiological and genomic features of a novel sulfur-oxidizing gammaproteobacterium belonging to a previously uncultivated symbiotic lineage isolated from a hydrothermal vent. PLoS One (2014) 0.75
The Proteome and Lipidome of Thermococcus kodakarensis across the Stationary Phase. Archaea (2016) 0.75
Carbon and Sulfur Cycling below the Chemocline in a Meromictic Lake and the Identification of a Novel Taxonomic Lineage in the FCB Superphylum, Candidatus Aegiribacteria. Front Microbiol (2016) 0.75
A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea. Nat Commun (2017) 0.75
Draft genome sequence of sulfur-reducing archaeon Thermococcus thioreducens DSM 14981(T). Braz J Microbiol (2016) 0.75
An archaeal ADP-dependent serine kinase involved in cysteine biosynthesis and serine metabolism. Nat Commun (2016) 0.75
Metabolism: Nothing to waste. Nat Chem Biol (2012) 0.75
Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function. Extremophiles (2013) 0.75
Proteomic insights into the temperature responses of a cold-adaptive archaeon Methanolobus psychrophilus R15. Extremophiles (2014) 0.75
Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res (2005) 3.68
Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Bacteriol (2003) 2.85
Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1. Archaea (2004) 2.41
Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis. Appl Environ Microbiol (2005) 2.12
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res (2010) 2.00
Formate-driven growth coupled with H(2) production. Nature (2010) 1.57
Genetic evidence identifying the true gluconeogenic fructose-1,6-bisphosphatase in Thermococcus kodakaraensis and other hyperthermophiles. J Bacteriol (2004) 1.56
Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance. J Bacteriol (2007) 1.54
Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales. FEMS Microbiol Rev (2011) 1.43
Enzymatic characterization of a prokaryotic urea carboxylase. J Bacteriol (2004) 1.42
Rhodoligotrophos appendicifer gen. nov., sp. nov., an appendaged bacterium isolated from a freshwater Antarctic lake. Int J Syst Evol Microbiol (2011) 1.38
Reverse gyrase is not a prerequisite for hyperthermophilic life. J Bacteriol (2004) 1.35
A novel candidate for the true fructose-1,6-bisphosphatase in archaea. J Biol Chem (2002) 1.32
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis. J Bacteriol (2006) 1.31
Characterization of an exo-beta-D-glucosaminidase involved in a novel chitinolytic pathway from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Bacteriol (2003) 1.26
Biophysical effect of amino acids on the prevention of protein aggregation. J Biochem (2002) 1.24
A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes. J Biol Chem (2007) 1.22
Agmatine is essential for the cell growth of Thermococcus kodakaraensis. FEMS Microbiol Lett (2008) 1.22
Extremely stable and versatile carboxylesterase from a hyperthermophilic archaeon. Appl Environ Microbiol (2002) 1.21
Concerted action of diacetylchitobiose deacetylase and exo-beta-D-glucosaminidase in a novel chitinolytic pathway in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Biol Chem (2004) 1.19
Pyrobaculum calidifontis sp. nov., a novel hyperthermophilic archaeon that grows in atmospheric air. Archaea (2002) 1.17
Continuous hydrogen production by the hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1. J Biotechnol (2005) 1.15
Isoprenoid biosynthesis in Archaea--biochemical and evolutionary implications. Res Microbiol (2010) 1.15
Characterization of an archaeal cyclodextrin glucanotransferase with a novel C-terminal domain. J Bacteriol (2002) 1.14
Pantoate kinase and phosphopantothenate synthetase, two novel enzymes necessary for CoA biosynthesis in the Archaea. J Biol Chem (2009) 1.14
Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: insights into cyanation reaction by thiol redox signaling. Mol Cell (2007) 1.12
Polarity in archaeal operon transcription in Thermococcus kodakaraensis. J Bacteriol (2008) 1.11
Phosphoenolpyruvate synthase plays an essential role for glycolysis in the modified Embden-Meyerhof pathway in Thermococcus kodakarensis. Mol Microbiol (2006) 1.09
Distinct physiological roles of the three [NiFe]-hydrogenase orthologs in the hyperthermophilic archaeon Thermococcus kodakarensis. J Bacteriol (2011) 1.08
Allophanate hydrolase of Oleomonas sagaranensis involved in an ATP-dependent degradation pathway specific to urea. FEMS Microbiol Lett (2005) 1.08
Unique presence of a manganese catalase in a hyperthermophilic archaeon, Pyrobaculum calidifontis VA1. J Bacteriol (2002) 1.07
A membrane-bound archaeal Lon protease displays ATP-independent proteolytic activity towards unfolded proteins and ATP-dependent activity for folded proteins. J Bacteriol (2002) 1.05
Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation. J Mol Biol (2009) 1.02
The unique pentagonal structure of an archaeal Rubisco is essential for its high thermostability. J Biol Chem (2002) 1.02
Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakarensis mutant lacking subunit F is temperature-sensitive. Mol Microbiol (2008) 1.02
Arginine ethylester prevents thermal inactivation and aggregation of lysozyme. Eur J Biochem (2004) 1.01
Catalyzing "hot" reactions: enzymes from hyperthermophilic Archaea. Chem Rec (2002) 1.01
The crystal structure of an esterase from the hyperthermophilic microorganism Pyrobaculum calidifontis VA1 explains its enantioselectivity. Appl Microbiol Biotechnol (2011) 0.99
Cloning and characterization of the gene cluster encoding arthrofactin synthetase from Pseudomonas sp. MIS38. Chem Biol (2003) 0.99
A novel ADP-forming succinyl-CoA synthetase in Thermococcus kodakaraensis structurally related to the archaeal nucleoside diphosphate-forming acetyl-CoA synthetases. J Biol Chem (2007) 0.98
Characterization of a cytosolic NiFe-hydrogenase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Bacteriol (2003) 0.97
Prevention of thermal inactivation and aggregation of lysozyme by polyamines. Eur J Biochem (2003) 0.96
Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis. RNA Biol (2013) 0.96
Thermococcus kodakarensis mutants deficient in di-myo-inositol phosphate use aspartate to cope with heat stress. J Bacteriol (2010) 0.96
Presence of a novel phosphopentomutase and a 2-deoxyribose 5-phosphate aldolase reveals a metabolic link between pentoses and central carbon metabolism in the hyperthermophilic archaeon Thermococcus kodakaraensis. J Bacteriol (2004) 0.95
Effect of growth temperature and growth phase on the lipid composition of the archaeal membrane from Thermococcus kodakaraensis. Biosci Biotechnol Biochem (2009) 0.95
Expression profiles and physiological roles of two types of molecular chaperonins from the hyperthermophilic archaeon Thermococcus kodakarensis. Appl Environ Microbiol (2008) 0.93
Substrate recognition and fidelity of strand joining by an archaeal DNA ligase. Eur J Biochem (2002) 0.93
Overview of the genetic tools in the Archaea. Front Microbiol (2012) 0.93
Ubiquitous expression of acetylcholine and its biological functions in life forms without nervous systems. Life Sci (2007) 0.93
Comparative analyses of the two proliferating cell nuclear antigens from the hyperthermophilic archaeon, Thermococcus kodakarensis. Genes Cells (2012) 0.92
Kinetic and biochemical analyses on the reaction mechanism of a bacterial ATP-citrate lyase. Eur J Biochem (2002) 0.92
Analysis of metabolic fluxes for better understanding of mechanisms related to lipid accumulation in oleaginous yeast Trichosporon cutaneum. Bioresour Technol (2012) 0.92
Tk-PTP, protein tyrosine/serine phosphatase from hyperthermophilic archaeon Thermococcus kodakaraensis KOD1: enzymatic characteristics and identification of its substrate proteins. Biochem Biophys Res Commun (2002) 0.92
First characterization of an archaeal GTP-dependent phosphoenolpyruvate carboxykinase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Bacteriol (2004) 0.92
Highly thermostable L-threonine dehydrogenase from the hyperthermophilic archaeon Thermococcus kodakaraensis. J Biochem (2009) 0.92
Biochemical and genetical analyses of the three mcm genes from the hyperthermophilic archaeon, Thermococcus kodakarensis. Genes Cells (2011) 0.91
Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis. Mol Biol Cell (2011) 0.91
Thermostable direct hemolysin of Vibrio parahaemolyticus is a bacterial reversible amyloid toxin. Biochemistry (2005) 0.91
Thermococcus kodakarensis as a host for gene expression and protein secretion. Appl Environ Microbiol (2011) 0.90
Gene cloning and characterization of fructose-1,6-bisphosphate aldolase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Biosci Bioeng (2002) 0.90
Biochemical and genetic characterization of the three metabolic routes in Thermococcus kodakarensis linking glyceraldehyde 3-phosphate and 3-phosphoglycerate. Mol Microbiol (2011) 0.89