Published in Proteomics on July 22, 2016
Protein turnover measurement using selected reaction monitoring-mass spectrometry (SRM-MS). Philos Trans A Math Phys Eng Sci (2016) 0.75
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol (2008) 38.00
Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell (2000) 36.09
Global analysis of protein expression in yeast. Nature (2003) 34.15
The heat-shock proteins. Annu Rev Genet (1988) 22.28
Molecular chaperones in the cytosol: from nascent chain to folded protein. Science (2002) 15.09
Andromeda: a peptide search engine integrated into the MaxQuant environment. J Proteome Res (2011) 14.82
Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. Cell (2000) 13.44
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics (2010) 13.35
Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell (2001) 9.63
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet (2012) 8.55
Hsp104, Hsp70, and Hsp40: a novel chaperone system that rescues previously aggregated proteins. Cell (1998) 7.69
hsp82 is an essential protein that is required in higher concentrations for growth of cells at higher temperatures. Mol Cell Biol (1989) 5.37
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Mol Cell Proteomics (2014) 5.09
Genome-wide analysis of the biology of stress responses through heat shock transcription factor. Mol Cell Biol (2004) 3.61
Molecular chaperone functions in protein folding and proteostasis. Annu Rev Biochem (2013) 3.56
mProphet: automated data processing and statistical validation for large-scale SRM experiments. Nat Methods (2011) 3.10
Regulation of HSF1 function in the heat stress response: implications in aging and disease. Annu Rev Biochem (2011) 2.80
Growth control of the eukaryote cell: a systems biology study in yeast. J Biol (2007) 2.79
Hsp26: a temperature-regulated chaperone. EMBO J (1999) 2.51
Differential regulation of the 70K heat shock gene and related genes in Saccharomyces cerevisiae. Mol Cell Biol (1984) 2.45
dbPTM: an information repository of protein post-translational modification. Nucleic Acids Res (2006) 2.28
Mutations in cognate genes of Saccharomyces cerevisiae hsp70 result in reduced growth rates at low temperatures. Mol Cell Biol (1985) 2.24
The response to heat shock and oxidative stress in Saccharomyces cerevisiae. Genetics (2011) 2.16
Heat-shock protein 104 expression is sufficient for thermotolerance in yeast. Proc Natl Acad Sci U S A (1996) 2.02
Chaperone regulation of the heat shock protein response. Adv Exp Med Biol (2007) 1.94
A chaperone pathway in protein disaggregation. Hsp26 alters the nature of protein aggregates to facilitate reactivation by Hsp104. J Biol Chem (2005) 1.92
The quantitative and condition-dependent Escherichia coli proteome. Nat Biotechnol (2015) 1.83
Hsp104, Hsp70 and Hsp40 interplay regulates formation, growth and elimination of Sup35 prions. EMBO J (2008) 1.82
An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell. Mol Syst Biol (2009) 1.75
Involvement of long chain fatty acid elongation in the trafficking of secretory vesicles in yeast. J Cell Biol (1998) 1.71
Protein folding in the cytoplasm and the heat shock response. Cold Spring Harb Perspect Biol (2010) 1.71
Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae. Methods (2002) 1.56
Biology of the heat shock response and protein chaperones: budding yeast (Saccharomyces cerevisiae) as a model system. Microbiol Mol Biol Rev (2012) 1.48
The molecular chaperone Hsp104--a molecular machine for protein disaggregation. J Struct Biol (2006) 1.41
Hsp42 is the general small heat shock protein in the cytosol of Saccharomyces cerevisiae. EMBO J (2004) 1.39
On the Dependency of Cellular Protein Levels on mRNA Abundance. Cell (2016) 1.26
Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy. Proteomics (2011) 1.16
Induction of major heat-shock proteins of Saccharomyces cerevisiae, including plasma membrane Hsp30, by ethanol levels above a critical threshold. Microbiology (1994) 1.16
Protein misfolding and temperature up-shift cause G1 arrest via a common mechanism dependent on heat shock factor in Saccharomycescerevisiae. Proc Natl Acad Sci U S A (2001) 1.14
CONSeQuence: prediction of reference peptides for absolute quantitative proteomics using consensus machine learning approaches. Mol Cell Proteomics (2011) 1.12
Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach. Mol Cell Proteomics (2011) 1.11
The importance of the digest: proteolysis and absolute quantification in proteomics. Methods (2011) 1.10
Cloning, sequencing and chromosomal assignment of a gene from Saccharomyces cerevisiae which is negatively regulated by glucose and positively by lipids. Gene (1990) 1.09
Ubiquitin conjugation triggers misfolded protein sequestration into quality control foci when Hsp70 chaperone levels are limiting. Mol Biol Cell (2013) 1.07
The Type II Hsp40 Sis1 cooperates with Hsp70 and the E3 ligase Ubr1 to promote degradation of terminally misfolded cytosolic protein. PLoS One (2013) 1.06
SSB, encoding a ribosome-associated chaperone, is coordinately regulated with ribosomal protein genes. J Bacteriol (1999) 1.01
Complex regulation of the yeast heat shock transcription factor. Mol Biol Cell (2000) 1.00
Prediction of missed proteolytic cleavages for the selection of surrogate peptides for quantitative proteomics. OMICS (2012) 0.97
The use of selected reaction monitoring in quantitative proteomics. Bioanalysis (2012) 0.95
aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data. Bioinformatics (2014) 0.89
Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs. Cell Stress Chaperones (2015) 0.88
Comparative proteome analysis of Saccharomyces cerevisiae: a global overview of in vivo targets of the yeast activator protein 1. BMC Genomics (2012) 0.85
Quantitative analysis of chaperone network throughput in budding yeast. Proteomics (2013) 0.85
A proteomic survey of widespread protein aggregation in yeast. Mol Biosyst (2014) 0.85
Absolute multiplexed protein quantification using QconCAT technology. Methods Mol Biol (2012) 0.84
The membrane-associated transient receptor potential vanilloid channel is the central heat shock receptor controlling the cellular heat shock response in epithelial cells. PLoS One (2013) 0.83
Direct and Absolute Quantification of over 1800 Yeast Proteins via Selected Reaction Monitoring. Mol Cell Proteomics (2016) 0.82
Structural and functional study of YER067W, a new protein involved in yeast metabolism control and drug resistance. PLoS One (2010) 0.79
Activation of the protein kinase C1 pathway upon continuous heat stress in Saccharomyces cerevisiae is triggered by an intracellular increase in osmolarity due to trehalose accumulation. Appl Environ Microbiol (2005) 0.78
Quantitative proteomics and network analysis of SSA1 and SSB1 deletion mutants reveals robustness of chaperone HSP70 network in Saccharomyces cerevisiae. Proteomics (2015) 0.77
Understanding the Mechanism of Thermotolerance Distinct From Heat Shock Response Through Proteomic Analysis of Industrial Strains of Saccharomyces cerevisiae. Mol Cell Proteomics (2015) 0.76