Published in Genome Biol on July 08, 2016
Responses to Hypoxia and Endoplasmic Reticulum Stress Discriminate the Development of Vitreous and Floury Endosperms of Conventional Maize (Zea mays) Inbred Lines. Front Plant Sci (2017) 0.75
Comparative genomics provides insight into maize adaptation in temperate regions. Genome Biol (2016) 0.75
Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts. PLoS Genet (2017) 0.75
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics (1989) 73.50
Evolutionary relationship of DNA sequences in finite populations. Genetics (1983) 40.67
A map of recent positive selection in the human genome. PLoS Biol (2006) 29.19
The variant call format and VCFtools. Bioinformatics (2011) 25.88
Detecting recent positive selection in the human genome from haplotype structure. Nature (2002) 22.00
Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics (1985) 20.92
The effect of deleterious mutations on neutral molecular variation. Genetics (1993) 20.07
A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet (2009) 17.80
Fast model-based estimation of ancestry in unrelated individuals. Genome Res (2009) 15.63
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J (2004) 15.51
agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res (2010) 10.53
A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana. Mol Gen Genet (1991) 10.40
The genetic architecture of maize flowering time. Science (2009) 9.27
Signals of recent positive selection in a worldwide sample of human populations. Genome Res (2009) 8.38
The limits of selection during maize domestication. Nature (1999) 8.14
Genetic properties of the maize nested association mapping population. Science (2009) 7.78
A pair of related genes with antagonistic roles in mediating flowering signals. Science (1999) 7.51
Molecular signatures of natural selection. Annu Rev Genet (2005) 7.51
Genomic scans for selective sweeps using SNP data. Genome Res (2005) 6.43
Green revolution: a mutant gibberellin-synthesis gene in rice. Nature (2002) 5.84
Second-generation PLINK: rising to the challenge of larger and richer datasets. Gigascience (2015) 5.06
Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J (2005) 4.59
Comparative population genomics of maize domestication and improvement. Nat Genet (2012) 3.78
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize. Proc Natl Acad Sci U S A (2007) 3.63
The origin of the naked grains of maize. Nature (2005) 3.54
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One (2011) 3.30
The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maize. Cell (1998) 3.18
Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nat Genet (2012) 2.78
Genome-wide genetic changes during modern breeding of maize. Nat Genet (2012) 2.60
A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell (2005) 2.50
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics (2006) 2.43
Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome. Genetics (2004) 2.33
Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc Natl Acad Sci U S A (2002) 2.29
A maize (E)-beta-caryophyllene synthase implicated in indirect defense responses against herbivores is not expressed in most American maize varieties. Plant Cell (2008) 2.05
Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene. Genetics (2006) 1.96
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat Genet (2013) 1.96
High genetic variability of herbivore-induced volatile emission within a broad range of maize inbred lines. Plant Physiol (2004) 1.89
Comparative proteomic analysis provides new insights into chilling stress responses in rice. Mol Cell Proteomics (2005) 1.79
delayed flowering1 Encodes a basic leucine zipper protein that mediates floral inductive signals at the shoot apex in maize. Plant Physiol (2006) 1.77
Arabidopsis TERMINAL FLOWER1 is involved in the regulation of flowering time and inflorescence development through transcriptional repression. Plant Cell (2011) 1.69
The maize transcription factor KNOTTED1 directly regulates the gibberellin catabolism gene ga2ox1. Plant Cell (2009) 1.68
Linkage mapping of domestication loci in a large maize teosinte backcross resource. Genetics (2007) 1.66
A genomic and expression compendium of the expanded PEBP gene family from maize. Plant Physiol (2007) 1.61
synbreed: a framework for the analysis of genomic prediction data using R. Bioinformatics (2012) 1.55
Toward positional cloning of Vgt1, a QTL controlling the transition from the vegetative to the reproductive phase in maize. Plant Mol Biol (2002) 1.49
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proc Natl Acad Sci U S A (2012) 1.49
Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle. BMC Genomics (2011) 1.47
Fine mapping and characterization of linked quantitative trait loci involved in the transition of the maize apical meristem from vegetative to generative structures. Genetics (1999) 1.40
Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information. Genetics (2008) 1.36
Classic selective sweeps revealed by massive sequencing in cattle. PLoS Genet (2014) 1.33
Intraspecific variation of recombination rate in maize. Genome Biol (2013) 1.32
Genome-wide DNA polymorphism analyses using VariScan. BMC Bioinformatics (2006) 1.31
Insights into the maize pan-genome and pan-transcriptome. Plant Cell (2014) 1.30
Maize introduction into Europe: the history reviewed in the light of molecular data. Theor Appl Genet (2002) 1.30
A maize CONSTANS-like gene, conz1, exhibits distinct diurnal expression patterns in varied photoperiods. Planta (2008) 1.26
Genetic hitchhiking versus background selection: the controversy and its implications. Philos Trans R Soc Lond B Biol Sci (2010) 1.25
A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genomics (2014) 1.12
Usefulness of multiparental populations of maize (Zea mays L.) for genome-based prediction. Genetics (2014) 1.07
Concerted modification of flowering time and inflorescence architecture by ectopic expression of TFL1-like genes in maize. Plant Physiol (2010) 1.05
Geranyl diphosphate synthase is required for biosynthesis of gibberellins. Plant J (2007) 0.98
A gene regulatory network model for floral transition of the shoot apex in maize and its dynamic modeling. PLoS One (2012) 0.98
Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize. Genetics (2014) 0.93
MADS-box genes of maize: frequent targets of selection during domestication. Genet Res (Camb) (2010) 0.91
The role of cis regulatory evolution in maize domestication. PLoS Genet (2014) 0.90
Genome-wide transcriptomic analysis of response to low temperature reveals candidate genes determining divergent cold-sensitivity of maize inbred lines. Plant Mol Biol (2014) 0.86
A MITE transposon insertion is associated with differential methylation at the maize flowering time QTL Vgt1. G3 (Bethesda) (2014) 0.86
PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants. PLoS One (2012) 0.86
The genetic architecture of flowering time and photoperiod sensitivity in maize as revealed by QTL review and meta analysis. J Integr Plant Biol (2012) 0.83
Geography and end use drive the diversification of worldwide winter rye populations. Mol Ecol (2016) 0.80
Stable carbon isotope discrimination is under genetic control in the C4 species maize with several genomic regions influencing trait expression. Plant Physiol (2013) 0.80
Is there an optimum level of diversity in utilization of genetic resources? Theor Appl Genet (2017) 0.75
European maize landraces made accessible for plant breeding and genome-based studies. Theor Appl Genet (2019) 0.75