Published in Proc Natl Acad Sci U S A on July 19, 2016
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Genotyping of whole genome amplified reduced representation libraries reveals a cryptic population of Culicoides brevitarsis in the Northern Territory, Australia. BMC Genomics (2016) 0.75
Chromosomal Speciation in the Genomics Era: Disentangling Phylogenetic Evolution of Rock-wallabies. Front Genet (2017) 0.75
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Inference of human population history from individual whole-genome sequences. Nature (2011) 8.05
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Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (2014) 5.88
Ancient admixture in human history. Genetics (2012) 4.99
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature (2012) 4.93
Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol (2009) 4.91
Insights into hominid evolution from the gorilla genome sequence. Nature (2012) 4.12
A genealogical interpretation of principal components analysis. PLoS Genet (2009) 4.12
Testing for ancient admixture between closely related populations. Mol Biol Evol (2011) 3.56
Speciation by hybridization in Heliconius butterflies. Nature (2006) 3.14
A new approach to estimate parameters of speciation models with application to apes. Genome Res (2007) 2.93
Fast "coalescent" simulation. BMC Genet (2006) 2.80
Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation. Philos Trans R Soc Lond B Biol Sci (2008) 2.75
Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics (2010) 2.70
Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry. Nature (2011) 2.65
Inference of historical changes in migration rate from the lengths of migrant tracts. Genetics (2008) 2.53
Evolution of Darwin's finches and their beaks revealed by genome sequencing. Nature (2015) 2.50
Robust demographic inference from genomic and SNP data. PLoS Genet (2013) 2.48
Estimating species phylogenies using coalescence times among sequences. Syst Biol (2009) 2.42
The genomic landscape of species divergence in Ficedula flycatchers. Nature (2012) 2.35
Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis. Mol Biol Evol (2012) 2.20
Spatial patterns of variation due to natural selection in humans. Nat Rev Genet (2009) 2.18
Coalescent methods for estimating phylogenetic trees. Mol Phylogenet Evol (2009) 2.14
The genomics of speciation-with-gene-flow. Trends Genet (2012) 2.07
Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. Proc Natl Acad Sci U S A (2012) 2.04
The probability of topological concordance of gene trees and species trees. Theor Popul Biol (2002) 2.02
Recombination and speciation. Mol Ecol (2005) 1.98
Applications of next-generation sequencing to phylogeography and phylogenetics. Mol Phylogenet Evol (2011) 1.97
Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics. Science (2014) 1.94
A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly. Nat Genet (2015) 1.94
Anchored hybrid enrichment for massively high-throughput phylogenomics. Syst Biol (2012) 1.94
Multilocus phylogeography and phylogenetics using sequence-based markers. Genetica (2008) 1.92
Natural selection constrains neutral diversity across a wide range of species. PLoS Biol (2015) 1.85
Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation. Mol Ecol (2013) 1.83
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Unlocking the vault: next-generation museum population genomics. Mol Ecol (2013) 1.77
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow. Mol Ecol (2014) 1.74
Speciational history of Australian grass finches (Poephila) inferred from thirty gene trees. Evolution (2005) 1.65
Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake. Science (2015) 1.61
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A powerful regression-based method for admixture mapping of isolation across the genome of hybrids. Mol Ecol (2009) 1.56
Quaternary phylogeography: the roots of hybrid zones. Genetica (2011) 1.53
A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks. Curr Biol (2011) 1.50
Prediction of phylogeographic endemism in an environmentally complex biome. Proc Biol Sci (2014) 1.47
Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice. Philos Trans R Soc Lond B Biol Sci (2012) 1.44
Does gene flow constrain adaptive divergence or vice versa? A test using ecomorphology and sexual isolation in Timema cristinae walking-sticks. Evolution (2004) 1.39
Stick insect genomes reveal natural selection's role in parallel speciation. Science (2014) 1.39
Independent Transitions between Monsoonal and Arid Biomes Revealed by Systematic Revison of a Complex of Australian Geckos (Diplodactylus; Diplodactylidae). PLoS One (2014) 1.39
Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes. Syst Biol (2009) 1.34
Mammalian evolution may not be strictly bifurcating. Mol Biol Evol (2010) 1.33
Divergence across Australia's Carpentarian barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus). Evolution (2008) 1.27
SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics (2010) 1.26
Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales. Syst Biol (2013) 1.26
A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera. Nat Genet (2014) 1.18
Hybridization, introgression, and the nature of species boundaries. J Hered (2014) 1.16
The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals. Mol Biol Evol (2009) 1.16
Quartet inference from SNP data under the coalescent model. Bioinformatics (2014) 1.15
Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone. Mol Ecol (2010) 1.15
A multilocus perspective on refugial isolation and divergence in rainforest skinks (Carlia). Evolution (2006) 1.15
Identification and dynamics of a cryptic suture zone in tropical rainforest. Proc Biol Sci (2009) 1.13
Anonymous nuclear DNA markers in the American oyster and their implications for the heterozygote deficiency phenomenon in marine bivalves. Mol Biol Evol (1996) 1.13
Computational approaches to species phylogeny inference and gene tree reconciliation. Trends Ecol Evol (2013) 1.10
Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales. Evol Biol (2012) 1.08
Museum genomics: low-cost and high-accuracy genetic data from historical specimens. Mol Ecol Resour (2011) 1.07
Is recombination a problem for species-tree analyses? Syst Biol (2012) 1.04
Targeted capture in evolutionary and ecological genomics. Mol Ecol (2015) 1.01
Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences. Mol Phylogenet Evol (2011) 1.00
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers. Genome Res (2015) 1.00
How reticulated are species? Bioessays (2015) 0.96
Jaatha: a fast composite-likelihood approach to estimate demographic parameters. Mol Ecol (2011) 0.93
Evolutionary origins and diversification of dragon lizards in Australia's tropical savannas. Mol Phylogenet Evol (2010) 0.93
Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: did mangrove habitats maintain genetic connectivity in the Black Butcherbird? Mol Ecol (2011) 0.92
Multiple biogeographical barriers identified across the monsoon tropics of northern Australia: phylogeographic analysis of the brachyotis group of rock-wallabies. Mol Ecol (2012) 0.92
A genomic perspective on hybridization and speciation. Mol Ecol (2016) 0.92
Trade-offs and utility of alternative RADseq methods: reply to Puritz et al. Mol Ecol (2014) 0.92
Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation. Mol Ecol (2015) 0.92
Estimating phylogenetic trees from genome-scale data. Ann N Y Acad Sci (2015) 0.92
Model selection as a tool for phylogeographic inference: an example from the willow Salix melanopsis. Mol Ecol (2013) 0.90
A new method for modeling coalescent processes with recombination. BMC Bioinformatics (2014) 0.90
The anatomy of a 'suture zone' in Amazonian butterflies: a coalescent-based test for vicariant geographic divergence and speciation. Mol Ecol (2010) 0.89
The role of the Ord Arid Intrusion in the historical and contemporary genetic division of long-tailed finch subspecies in northern Australia. Ecol Evol (2012) 0.89
On the nonidentifiability of migration time estimates in isolation with migration models. Mol Ecol (2011) 0.88
Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis. Mol Ecol (2016) 0.88
Reproductive isolation between phylogeographic lineages scales with divergence. Proc Biol Sci (2013) 0.88
Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow. Mol Phylogenet Evol (2014) 0.88
High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography. Syst Biol (2012) 0.87
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics. Mol Phylogenet Evol (2015) 0.87
Long-distance gene flow in a cooperative breeder detected in genealogies of mitochondrial DNA sequences. Proc Biol Sci (1993) 0.86
Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood (Populus trichocarpa). Mol Ecol (2014) 0.86
Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards. BMC Evol Biol (2015) 0.86
An Exon-Capture System for the Entire Class Ophiuroidea. Mol Biol Evol (2015) 0.85
Inferring past demography using spatially explicit population genetic models. Hum Biol (2009) 0.85
Phylogenetic relationships of rock-wallabies, Petrogale (Marsupialia: Macropodidae) and their biogeographic history within Australia. Mol Phylogenet Evol (2011) 0.85
The "Atlantis Forest hypothesis" does not explain Atlantic Forest phylogeography. Proc Natl Acad Sci U S A (2016) 0.86