Cleavage of Model Substrates by Arabidopsis thaliana PRORP1 Reveals New Insights into Its Substrate Requirements.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 27494328)

Published in PLoS One on August 05, 2016

Authors

Guanzhong Mao1, Tien-Hao Chen2, Abhishek S Srivastava1, David Kosek1, Pradip K Biswas2, Venkat Gopalan2, Leif A Kirsebom1

Author Affiliations

1: Department of Cell and Molecular Biology, Box 596, Biomedical Centre, SE-751 24, Uppsala, Sweden.
2: Department of Chemistry & Biochemistry, Center for RNA Biology, The Ohio State University, Columbus, Ohio, 43210, United States of America.

Articles cited by this

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res (1987) 25.34

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell (1983) 15.26

Additivity of mutational effects in proteins. Biochemistry (1990) 4.05

External guide sequences for an RNA enzyme. Science (1990) 3.55

Model substrates for an RNA enzyme. Science (1987) 3.20

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme. Cell (2008) 3.15

Protein-RNA interactions in the RNase P holoenzyme from Escherichia coli. J Mol Biol (1988) 2.71

Nucleotide sequence and in vitro processing of a precursor molecule to Escherichia coli 4.5 S RNA. J Biol Chem (1976) 2.43

Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA. Nature (2010) 2.40

Post-transcriptional nucleotide addition is responsible for the formation of the 5' terminus of histidine tRNA. Proc Natl Acad Sci U S A (1982) 2.32

Base pairing between Escherichia coli RNase P RNA and its substrate. EMBO J (1994) 2.26

Important 2'-hydroxyl groups in model substrates for M1 RNA, the catalytic RNA subunit of RNase P from Escherichia coli. J Mol Biol (1992) 1.85

Processing of histidine transfer RNA precursors. Abnormal cleavage site for RNase P. J Biol Chem (1988) 1.78

Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli. J Mol Biol (1991) 1.77

Eukaryotic RNase P RNA mediates cleavage in the absence of protein. Proc Natl Acad Sci U S A (2007) 1.74

A single Arabidopsis organellar protein has RNase P activity. Nat Struct Mol Biol (2010) 1.72

Recognition of the T stem-loop of a pre-tRNA substrate by the ribozyme from Bacillus subtilis ribonuclease P. Biochemistry (1997) 1.49

Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects. FEBS Lett (2010) 1.47

Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes. J Mol Biol (2015) 1.42

Quantitative approaches to monitor protein-nucleic acid interactions using fluorescent probes. RNA (2010) 1.40

Structural requirements for processing of synthetic tRNAHis precursors by the catalytic RNA component of RNase P. J Biol Chem (1988) 1.40

The kinetics and specificity of cleavage by RNase P is mainly dependent on the structure of the amino acid acceptor stem. Nucleic Acids Res (1992) 1.37

Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp. Biochemistry (1996) 1.33

Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing. Proc Natl Acad Sci U S A (2012) 1.32

Several regions of a tRNA precursor determine the Escherichia coli RNase P cleavage site. J Mol Biol (1992) 1.31

Substrate recognition by human RNase P: identification of small, model substrates for the enzyme. EMBO J (1995) 1.29

Identification of a region within M1 RNA of Escherichia coli RNase P important for the location of the cleavage site on a wild-type tRNA precursor. J Mol Biol (1993) 1.25

Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme. Biochemistry (1998) 1.25

Site selection by Xenopus laevis RNAase P. Cell (1989) 1.25

The origin and evolution of tRNA inferred from phylogenetic analysis of structure. J Mol Evol (2007) 1.18

The P15-loop of Escherichia coli RNase P RNA is an autonomous divalent metal ion binding domain. RNA (1998) 1.15

Pathway of activation by magnesium ions of substrates for the catalytic subunit of RNase P from Escherichia coli. J Mol Biol (1993) 1.13

Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate. RNA (1996) 1.08

Determinants of Escherichia coli RNase P cleavage site selection: a detailed in vitro and in vivo analysis. Nucleic Acids Res (1993) 1.03

The 5'-terminal guanylate of chloroplast histidine tRNA is encoded in its gene. J Biol Chem (1988) 1.02

Discovery of a minimal form of RNase P in Pyrobaculum. Proc Natl Acad Sci U S A (2010) 1.01

Evidence for induced fit in bacterial RNase P RNA-mediated cleavage. J Mol Biol (2007) 1.01

The acceptor stem in pre-tRNAs determines the cleavage specificity of RNase P. Nucleic Acids Res (1992) 1.01

The residue immediately upstream of the RNase P cleavage site is a positive determinant. Biochimie (2002) 1.00

The pre-tRNA nucleotide base and 2'-hydroxyl at N(-1) contribute to fidelity in tRNA processing by RNase P. J Mol Biol (2004) 0.98

Metal ion cooperativity in ribozyme cleavage of RNA. Proc Natl Acad Sci U S A (2001) 0.98

Importance of the +73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination. J Mol Biol (2003) 0.97

Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage. Nucleic Acids Res (2004) 0.96

Manganese ions induce miscleavage in the Escherichia coli RNase P RNA-catalyzed reaction. J Mol Biol (1999) 0.95

Structural insights into protein-only RNase P complexed with tRNA. Nat Commun (2013) 0.95

Plant mitochondria use two pathways for the biogenesis of tRNAHis. Nucleic Acids Res (2010) 0.93

tRNA processing by protein-only versus RNA-based RNase P: kinetic analysis reveals mechanistic differences. Chembiochem (2012) 0.92

Catalysis by RNase P RNA: unique features and unprecedented active site plasticity. J Biol Chem (2003) 0.92

RNase P RNA-mediated cleavage. IUBMB Life (2009) 0.92

The exocyclic amine at the RNase P cleavage site contributes to substrate binding and catalysis. J Mol Biol (2006) 0.88

The naturally trans-acting ribozyme RNase P RNA has leadzyme properties. Nucleic Acids Res (2005) 0.87

Tertiary structure of bacterial selenocysteine tRNA. Nucleic Acids Res (2013) 0.86

Complexity in orchestration of chemical groups near different cleavage sites in RNase P RNA mediated cleavage. J Mol Biol (2005) 0.86

Pentatricopeptide repeat motifs in the processing enzyme PRORP1 in Arabidopsis thaliana play a crucial role in recognition of nucleotide bases at TψC loop in precursor tRNAs. Biochem Biophys Res Commun (2014) 0.86

Mechanistic Studies Reveal Similar Catalytic Strategies for Phosphodiester Bond Hydrolysis by Protein-only and RNA-dependent Ribonuclease P. J Biol Chem (2015) 0.84

Fidelity of tRNA 5'-maturation: a possible basis for the functional dependence of archaeal and eukaryal RNase P on multiple protein cofactors. Nucleic Acids Res (2012) 0.83

Multiple RNA processing defects and impaired chloroplast function in plants deficient in the organellar protein-only RNase P enzyme. PLoS One (2015) 0.82

Differential substrate recognition by isozymes of plant protein-only Ribonuclease P. RNA (2016) 0.82

PPR proteins shed a new light on RNase P biology. RNA Biol (2013) 0.81

The tRNA Elbow in Structure, Recognition and Evolution. Life (Basel) (2016) 0.81

Functional coupling between a distal interaction and the cleavage site in bacterial RNase-P-RNA-mediated cleavage. J Mol Biol (2011) 0.80

The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis. Plant J (2016) 0.79

Cleavage mediated by the catalytic domain of bacterial RNase P RNA. J Mol Biol (2012) 0.79

The processing of wild type and mutant forms of rat nuclear pre-tRNA(Lys) by the homologous RNase P. Nucleic Acids Res (1994) 0.79

Cleavage mediated by the P15 domain of bacterial RNase P RNA. Nucleic Acids Res (2011) 0.78

Substrate recognition and cleavage-site selection by a single-subunit protein-only RNase P. Nucleic Acids Res (2016) 0.78

Fluorescence labeling of short RNA by oxidation at the 3'-end. Methods Mol Biol (2015) 0.78

Use of chemical modification and mass spectrometry to identify substrate-contacting sites in proteinaceous RNase P, a tRNA processing enzyme. Nucleic Acids Res (2016) 0.76

Transition-state stabilization in Escherichia coli ribonuclease P RNA-mediated cleavage of model substrates. Nucleic Acids Res (2013) 0.75