Published in Nucleic Acids Res on November 11, 1987
Improved predictions of secondary structures for RNA. Proc Natl Acad Sci U S A (1989) 11.52
Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc Natl Acad Sci U S A (1990) 11.10
Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc Natl Acad Sci U S A (1988) 7.76
Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F. Mol Cell Biol (1990) 7.33
RNA interference by expression of short-interfering RNAs and hairpin RNAs in mammalian cells. Proc Natl Acad Sci U S A (2002) 6.84
RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J (1994) 6.17
Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique. Nucleic Acids Res (1989) 5.22
Human immunodeficiency virus 1 tat protein binds trans-activation-responsive region (TAR) RNA in vitro. Proc Natl Acad Sci U S A (1989) 5.03
Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA. EMBO J (1998) 4.87
A cytoplasmic 57-kDa protein that is required for translation of picornavirus RNA by internal ribosomal entry is identical to the nuclear pyrimidine tract-binding protein. Proc Natl Acad Sci U S A (1993) 4.71
Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase. EMBO J (1994) 3.75
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies. Nature (2005) 3.71
A thermodynamic study of unusually stable RNA and DNA hairpins. Nucleic Acids Res (1991) 3.59
Chemical synthesis of biologically active oligoribonucleotides using beta-cyanoethyl protected ribonucleoside phosphoramidites. Nucleic Acids Res (1990) 3.58
Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format. Proc Natl Acad Sci U S A (1989) 3.56
Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA. Nucleic Acids Res (1992) 3.29
Characterization of RNA hairpin loop stability. Nucleic Acids Res (1988) 3.10
Interaction between retroviral U5 RNA and the T psi C loop of the tRNA(Trp) primer is required for efficient initiation of reverse transcription. J Virol (1992) 3.06
Dimerization of human immunodeficiency virus (type 1) RNA: stimulation by cations and possible mechanism. Nucleic Acids Res (1991) 2.94
Translation of poliovirus RNA: role of an essential cis-acting oligopyrimidine element within the 5' nontranslated region and involvement of a cellular 57-kilodalton protein. J Virol (1991) 2.86
Mechanism of non-spliceosomal mRNA splicing in the unfolded protein response pathway. EMBO J (1999) 2.84
Substrate sequence effects on "hammerhead" RNA catalytic efficiency. Proc Natl Acad Sci U S A (1990) 2.81
A cytosolic protein binds to structural elements within the iron regulatory region of the transferrin receptor mRNA. Proc Natl Acad Sci U S A (1989) 2.81
Preparation of 13C and 15N labelled RNAs for heteronuclear multi-dimensional NMR studies. Nucleic Acids Res (1992) 2.80
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops. Nucleic Acids Res (1992) 2.70
Attenuation of Venezuelan equine encephalitis virus strain TC-83 is encoded by the 5'-noncoding region and the E2 envelope glycoprotein. J Virol (1993) 2.69
Identification of molecular contacts between the U1 A small nuclear ribonucleoprotein and U1 RNA. EMBO J (1991) 2.61
Role of 3'-end sequences in infectivity of poliovirus transcripts made in vitro. J Virol (1989) 2.52
The active sites of the influenza cap-dependent endonuclease are on different polymerase subunits. EMBO J (2001) 2.52
Genetically engineered foot-and-mouth disease viruses with poly(C) tracts of two nucleotides are virulent in mice. J Virol (1993) 2.50
A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase. RNA (1999) 2.49
A plasmid-based reverse genetics system for animal double-stranded RNA viruses. Cell Host Microbe (2007) 2.48
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res (2003) 2.44
RNA folding causes secondary structure rearrangement. Proc Natl Acad Sci U S A (1998) 2.44
Stem-loop binding protein facilitates 3'-end formation by stabilizing U7 snRNP binding to histone pre-mRNA. Mol Cell Biol (1999) 2.41
Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA. Nature (2010) 2.40
T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates. RNA (1998) 2.39
'Hairpin' catalytic RNA model: evidence for helices and sequence requirement for substrate RNA. Nucleic Acids Res (1990) 2.38
Use of cis- and trans-ribozymes to remove 5' and 3' heterogeneities from milligrams of in vitro transcribed RNA. Nucleic Acids Res (1996) 2.36
The hybrid state of tRNA binding is an authentic translation elongation intermediate. Nat Struct Mol Biol (2006) 2.32
Processing of the intron-encoded U16 and U18 snoRNAs: the conserved C and D boxes control both the processing reaction and the stability of the mature snoRNA. EMBO J (1996) 2.31
Regulation of interaction of the iron-responsive element binding protein with iron-responsive RNA elements. Mol Cell Biol (1989) 2.26
Base pairing between Escherichia coli RNase P RNA and its substrate. EMBO J (1994) 2.26
Identification of a novel iron-responsive element in murine and human erythroid delta-aminolevulinic acid synthase mRNA. EMBO J (1991) 2.25
Repair and mutagenesis of the genome of a deletion mutant of the coronavirus mouse hepatitis virus by targeted RNA recombination. J Virol (1992) 2.20
Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing. Mol Cell Biol (2000) 2.20
The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein. EMBO J (1997) 2.19
Chemical synthesis of a biologically active natural tRNA with its minor bases. Nucleic Acids Res (1992) 2.16
Inhibition of cap (m7GpppXm)-dependent endonuclease of influenza virus by 4-substituted 2,4-dioxobutanoic acid compounds. Antimicrob Agents Chemother (1994) 2.13
The sequence of the stem and flanking sequences at the 3' end of histone mRNA are critical determinants for the binding of the stem-loop binding protein. Nucleic Acids Res (1995) 2.12
Nucleotide sequences and modifications that determine RIG-I/RNA binding and signaling activities. J Virol (2009) 2.10
The kink-turn motif in RNA is dimorphic, and metal ion-dependent. RNA (2004) 2.08
A specific orientation of RNA secondary structures is required for initiation of reverse transcription. J Virol (1994) 2.07
Sequence-specific recognition of double helical RNA and RNA.DNA by triple helix formation. Proc Natl Acad Sci U S A (1993) 2.07
A genomewide screen for components of the RNAi pathway in Drosophila cultured cells. Proc Natl Acad Sci U S A (2006) 2.04
Deletion analysis of the capsid protein of Sindbis virus: identification of the RNA binding region. J Virol (1993) 2.03
Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements. RNA (2004) 1.99
RNase T1 mediated base-specific cleavage and MALDI-TOF MS for high-throughput comparative sequence analysis. Nucleic Acids Res (2003) 1.99
RNA template-directed RNA synthesis by T7 RNA polymerase. Proc Natl Acad Sci U S A (1994) 1.98
Inhibition of human immunodeficiency virus type 1 expression by a hairpin ribozyme. Proc Natl Acad Sci U S A (1992) 1.96
The iron-responsive element binding protein: a method for the affinity purification of a regulatory RNA-binding protein. Proc Natl Acad Sci U S A (1989) 1.95
Identification of an RNA binding site for human thymidylate synthase. Proc Natl Acad Sci U S A (1993) 1.94
A highly sensitive method for mapping the 5' termini of mRNAs. Nucleic Acids Res (1993) 1.93
Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30S ribosomal components that can be cross-linked to the mRNA at various points 5' with respect to the decoding site. Nucleic Acids Res (1989) 1.93
Template requirements for RNA synthesis by a recombinant hepatitis C virus RNA-dependent RNA polymerase. J Virol (2000) 1.91
Schistosome satellite DNA encodes active hammerhead ribozymes. Mol Cell Biol (1998) 1.89
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Res (2002) 1.89
Architecture of telomerase RNA. EMBO J (1994) 1.88
RNA editing in Trypanosoma brucei requires three different editosomes. Mol Cell Biol (2007) 1.87
RNA structure, not sequence, determines the 5' splice-site specificity of a group I intron. Proc Natl Acad Sci U S A (1989) 1.85
Molecular basis for temperature sensing by an RNA thermometer. EMBO J (2006) 1.82
A catalytic 13-mer ribozyme. Nucleic Acids Res (1989) 1.82
Nucleotide sequence of classical swine fever virus strain Alfort/187 and transcription of infectious RNA from stably cloned full-length cDNA. J Virol (1996) 1.81
Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization. RNA (2001) 1.81
Exon repression by polypyrimidine tract binding protein. RNA (2005) 1.81
Position is the critical determinant for function of iron-responsive elements as translational regulators. Mol Cell Biol (1992) 1.79
Interaction of N-terminal domain of U1A protein with an RNA stem/loop. Nucleic Acids Res (1992) 1.77
Ligand-dependent folding of the three-way junction in the purine riboswitch. RNA (2008) 1.77
Thiophosphate interference experiments locate phosphates important for the hammerhead RNA self-cleavage reaction. Nucleic Acids Res (1990) 1.76
PUM2, a novel murine puf protein, and its consensus RNA-binding site. RNA (2001) 1.76
Isolation of high-affinity GTP aptamers from partially structured RNA libraries. Proc Natl Acad Sci U S A (2002) 1.74
Eukaryotic RNase P RNA mediates cleavage in the absence of protein. Proc Natl Acad Sci U S A (2007) 1.74
Sequence specificity of the human mRNA N6-adenosine methylase in vitro. Nucleic Acids Res (1990) 1.73
A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control. RNA (2007) 1.73
Non-hydrogen bonding 'terminator' nucleosides increase the 3'-end homogeneity of enzymatic RNA and DNA synthesis. Nucleic Acids Res (1996) 1.71
Replicon system for Lassa virus. J Virol (2004) 1.69
A specific 31-nucleotide domain of U1 RNA directly interacts with the 70K small nuclear ribonucleoprotein component. Mol Cell Biol (1989) 1.68
Interaction of eukaryotic translation initiation factor 4G with the nuclear cap-binding complex provides a link between nuclear and cytoplasmic functions of the m(7) guanosine cap. Mol Cell Biol (2001) 1.68
Single-molecule tracking of the transcription cycle by sub-second RNA detection. Elife (2014) 1.67
Structural requirements of iron-responsive elements for binding of the protein involved in both transferrin receptor and ferritin mRNA post-transcriptional regulation. Nucleic Acids Res (1990) 1.66
Prevention of human immunodeficiency virus type 1 integrase expression in Escherichia coli by a ribozyme. Proc Natl Acad Sci U S A (1991) 1.64
Enzymatic aminoacylation of an eight-base-pair microhelix with histidine. Proc Natl Acad Sci U S A (1990) 1.63
Tacaribe arenavirus RNA synthesis in vitro is primer dependent and suggests an unusual model for the initiation of genome replication. J Virol (1992) 1.63
Solution structure of a GAAA tetraloop receptor RNA. EMBO J (1997) 1.63
Phosphorylation of tristetraprolin by MK2 impairs AU-rich element mRNA decay by preventing deadenylase recruitment. Mol Cell Biol (2010) 1.63
The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J (2006) 1.62
Studies on the structure and stabilizing factor of the CUUCGG hairpin RNA using chemically synthesized oligonucleotides. Nucleic Acids Res (1990) 1.62
Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results. Biophys J (2007) 1.61
Translational regulation via iron-responsive elements by the nitric oxide/NO-synthase pathway. EMBO J (1993) 1.61
Binding sites of the 9- and 14-kilodalton heterodimeric protein subunit of the signal recognition particle (SRP) are contained exclusively in the Alu domain of SRP RNA and contain a sequence motif that is conserved in evolution. Mol Cell Biol (1991) 1.61
Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter. Nucleic Acids Res (1984) 86.56
Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements. J Mol Biol (1983) 19.98
Cloning and expression of the gene for bacteriophage T7 RNA polymerase. Proc Natl Acad Sci U S A (1984) 13.68
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Interactions of the RNA polymerase of bacteriophage T7 with its promoter during binding and initiation of transcription. Proc Natl Acad Sci U S A (1986) 3.39
Kinetic analysis of T7 RNA polymerase-promoter interactions with small synthetic promoters. Biochemistry (1987) 3.35
Interaction of R17 coat protein with its RNA binding site for translational repression. J Biomol Struct Dyn (1983) 3.20
3H and 32P derivative methods for base composition and sequence analysis of RNA. Methods Enzymol (1980) 2.92
Studies on SP6 promoter using a new plasmid vector that allows gene insertion at the transcription initiation site. Nucleic Acids Res (1987) 2.79
Nucleotide sequence and expression of the cloned gene of bacteriophage SP6 RNA polymerase. Nucleic Acids Res (1987) 2.50
Improved estimation of secondary structure in ribonucleic acids. Nat New Biol (1973) 46.33
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Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol (1989) 10.82
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A small catalytic oligoribonucleotide. Nature (1987) 8.73
Stability of RNA hairpin loops: A 6 -C m -U 6 . J Mol Biol (1973) 8.39
Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc Natl Acad Sci U S A (1988) 7.76
Specific labeling of 3' termini of RNA with T4 RNA ligase. Methods Enzymol (1980) 7.55
Reactions at the termini of tRNA with T4 RNA ligase. Nucleic Acids Res (1978) 5.93
CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes. Proc Natl Acad Sci U S A (1988) 5.50
A cytoplasmic 57-kDa protein that is required for translation of picornavirus RNA by internal ribosomal entry is identical to the nuclear pyrimidine tract-binding protein. Proc Natl Acad Sci U S A (1993) 4.71
Self-complementary oligoribonucleotides: effects of helix defects and guanylic acid-cytidylic acid base pairs. J Mol Biol (1971) 4.54
RNA binding site of R17 coat protein. Biochemistry (1987) 4.20
Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site. Biochemistry (1983) 4.09
Enzymatic oligoribonucleotide synthesis with T4 RNA ligase. Biochemistry (1978) 3.99
3'-Phosphatase activity in T4 polynucleotide kinase. Biochemistry (1977) 3.86
Sequence requirements of the hammerhead RNA self-cleavage reaction. Biochemistry (1990) 3.64
Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation. Science (2001) 3.54
Role of divalent metal ions in the hammerhead RNA cleavage reaction. Biochemistry (1991) 3.31
Characterization of RNA hairpin loop stability. Nucleic Acids Res (1988) 3.10
Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism. Biochemistry (1993) 2.91
Specific interaction between RNA phage coat proteins and RNA. Prog Nucleic Acid Res Mol Biol (1991) 2.84
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Substrate sequence effects on "hammerhead" RNA catalytic efficiency. Proc Natl Acad Sci U S A (1990) 2.81
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Self-complementary oligoribonucleotides: adenylic acid-uridylic acid block copolymers. J Mol Biol (1971) 2.78
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In vitro selection of RNAs that undergo autolytic cleavage with Pb2+. Biochemistry (1992) 2.60
Role of a bulged A residue in a specific RNA-protein interaction. Biochemistry (1987) 2.52
Cap-independent translation of picornavirus RNAs: structure and function of the internal ribosomal entry site. Enzyme (1990) 2.51
A kinetic and thermodynamic framework for the hammerhead ribozyme reaction. Biochemistry (1994) 2.39
T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates. RNA (1998) 2.39
Nucleotides in yeast tRNAPhe required for the specific recognition by its cognate synthetase. Science (1989) 2.36
Equimolar addition of oligoribonucleotides with T4 RNA ligase. Nucleic Acids Res (1977) 2.32
Interaction of R17 coat protein with synthetic variants of its ribonucleic acid binding site. Biochemistry (1983) 2.30
An RNA mutation that increases the affinity of an RNA-protein interaction. Nucleic Acids Res (1987) 2.25
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Kinetic and thermodynamic characterization of the R17 coat protein-ribonucleic acid interaction. Biochemistry (1983) 2.07
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Enzymatic replacement of the anticodon of yeast phenylalanine transfer ribonucleic acid. Biochemistry (1982) 1.94
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Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization. RNA (2001) 1.81
Thiophosphate interference experiments locate phosphates important for the hammerhead RNA self-cleavage reaction. Nucleic Acids Res (1990) 1.76
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Mutants of the bacteriophage MS2 coat protein that alter its cooperative binding to RNA. Biochemistry (1995) 1.72
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Joining of RNA molecules with RNA ligase. Methods Enzymol (1983) 1.62
Nucleoside and nucleotide inactivation of R17 coat protein: evidence for a transient covalent RNA-protein bond. Biochemistry (1985) 1.62
Role of the tertiary nucleotides in the interaction of yeast phenylalanine tRNA with its cognate synthetase. Biochemistry (1990) 1.60
Determination of RNA-protein contacts using thiophosphate substitutions. Biochemistry (1989) 1.60
The self-splicing RNA of Tetrahymena is trapped in a less active conformation by gel purification. Biochemistry (1990) 1.58
Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA. EMBO J (2001) 1.58
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Proton NMR and structural features of a 24-nucleotide RNA hairpin. Biochemistry (1995) 1.47
Sequence-dependent structural variations of hammerhead RNA enzymes. Nucleic Acids Res (1990) 1.47
Intact aminoacyl-tRNA is required to trigger GTP hydrolysis by elongation factor Tu on the ribosome. Biochemistry (2000) 1.47
A small metalloribozyme with a two-step mechanism. Nature (1992) 1.46
Specific RNA binding by Q beta coat protein. Biochemistry (1989) 1.45
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The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA. RNA (2001) 1.40
In vitro analysis of translational rate and accuracy with an unmodified tRNA. Biochemistry (1993) 1.40
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The effect of base mismatches in the substrate recognition helices of hammerhead ribozymes on binding and catalysis. Nucleic Acids Res (1995) 1.39
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Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins. Nucleic Acids Res (1999) 1.35
A specific, UV-induced RNA-protein cross-link using 5-bromouridine-substituted RNA. Biochemistry (1991) 1.34
Specific interaction of anticodon loop residues with yeast phenylalanyl-tRNA synthetase. Biochemistry (1982) 1.32
Determination of recognition nucleotides for Escherichia coli phenylalanyl-tRNA synthetase. Biochemistry (1992) 1.31
Enzymatic synthesis of a 21-nucleotide coat protein binding fragment of R17 ribonucleic acid. Biochemistry (1982) 1.31
Inhibition of the hammerhead ribozyme by neomycin. RNA (1995) 1.31
Cooperative binding of R17 coat protein to RNA. Biochemistry (1990) 1.30
Quantitative assessment of EF-1alpha.GTP binding to aminoacyl-tRNAs, aminoacyl-viral RNA, and tRNA shows close correspondence to the RNA binding properties of EF-Tu. J Biol Chem (1999) 1.29
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Binding of yeast tRNAPhe anticodon arm to Escherichia coli 30 S ribosomes. J Mol Biol (1983) 1.27
Polynucleotide kinase from a T4 mutant which lacks the 3' phosphatase activity. Nucleic Acids Res (1978) 1.27
Properties of an in vitro selected Pb2+ cleavage motif. Biochemistry (1994) 1.27
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Hammerhead ribozymes with a faster cleavage rate. Biochemistry (1997) 1.25
Many of the conserved nucleotides of tRNA(Phe) are not essential for ternary complex formation and peptide elongation. EMBO J (1994) 1.24
Interaction of Escherichia coli host factor protein with oligoriboadenylates. Biochemistry (1980) 1.21
Aminoacylation of anticodon loop substituted yeast tyrosine transfer RNA. Biochemistry (1985) 1.20
A re-investigation of the thio effect at the hammerhead cleavage site. Nucleic Acids Res (1999) 1.20
Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: genomic SELEX. Nucleic Acids Res (2000) 1.19
A new assay for tRNA aminoacylation kinetics. RNA (1998) 1.19