Gut microbiota associated with HIV infection is significantly enriched in bacteria tolerant to oxygen.

HIV-associated changes in the enteric microbial community: potential role in loss of homeostasis and development of systemic inflammation. Curr Opin Infect Dis (2016) 0.76

Basic local alignment search tool. J Mol Biol (1990) 659.07

QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34

Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97

An obesity-associated gut microbiome with increased capacity for energy harvest. Nature (2006) 44.35

No adjustments are needed for multiple comparisons. Epidemiology (1990) 23.80

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A (2007) 20.60

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res (2012) 19.48

Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: guidelines for reporting observational studies. BMJ (2007) 14.52

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci U S A (2008) 14.18

FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics (2011) 13.71

A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature (2012) 11.68

Metagenomic biomarker discovery and explanation. Genome Biol (2011) 11.29

Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci U S A (2009) 8.25

Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS One (2010) 6.48

Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. J Infect Dis (2008) 6.21

Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease. Gut (2004) 5.32

Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput Biol (2014) 4.74

Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm Bowel Dis (2009) 4.72

Microbial translocation is associated with sustained failure in CD4+ T-cell reconstitution in HIV-infected patients on long-term highly active antiretroviral therapy. AIDS (2008) 3.04

A test for comparing diversities based on the Shannon formula. J Theor Biol (1970) 2.52

Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism. Sci Transl Med (2013) 2.47

Specificities of the fecal microbiota in inflammatory bowel disease. Inflamm Bowel Dis (2006) 2.45

Midgut microbiota of the malaria mosquito vector Anopheles gambiae and interactions with Plasmodium falciparum infection. PLoS Pathog (2012) 2.30

Nutrition and HIV infection: review of weight loss and wasting in the era of highly active antiretroviral therapy from the nutrition for healthy living cohort. Clin Infect Dis (2006) 2.16

Rapid onset of intestinal epithelial barrier dysfunction in primary human immunodeficiency virus infection is driven by an imbalance between immune response and mucosal repair and regeneration. J Virol (2007) 2.11

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon. ISME J (2012) 2.02

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucleic Acids Res (2012) 1.93

A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects. PLoS Pathog (2014) 1.78

Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities. BMC Biol (2009) 1.74

Human gut microbiota: repertoire and variations. Front Cell Infect Microbiol (2012) 1.69

Alterations in the gut microbiota associated with HIV-1 infection. Cell Host Microbe (2013) 1.66

Early impairment of gut function and gut flora supporting a role for alteration of gastrointestinal mucosa in human immunodeficiency virus pathogenesis. J Clin Microbiol (2007) 1.60

The intestinal microbiota plays a role in Salmonella-induced colitis independent of pathogen colonization. PLoS One (2011) 1.57

An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia. Mucosal Immunol (2014) 1.54

Intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV infection. J Infect Dis (2014) 1.47

Molecular characterization of stool microbiota in HIV-infected subjects by panbacterial and order-level 16S ribosomal DNA (rDNA) quantification and correlations with immune activation. J Acquir Immune Defic Syndr (2011) 1.45

HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota. Microbiome (2013) 1.28

Molecular modulation of intestinal epithelial barrier: contribution of microbiota. J Biomed Biotechnol (2010) 1.25

Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease. J Med Microbiol (2009) 1.24

Effects of vitamin E and C supplementation on oxidative stress and viral load in HIV-infected subjects. AIDS (1998) 1.23

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism. ISME J (2014) 1.23

HIV-induced alteration in gut microbiota: driving factors, consequences, and effects of antiretroviral therapy. Gut Microbes (2014) 1.17

Immune status, antibiotic medication and pH are associated with changes in the stomach fluid microbiota. ISME J (2013) 1.17

Altered metabolism of gut microbiota contributes to chronic immune activation in HIV-infected individuals. Mucosal Immunol (2014) 1.13

Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure. Microb Biotechnol (2011) 1.12

Immunosuppressive Tryptophan Catabolism and Gut Mucosal Dysfunction Following Early HIV Infection. J Infect Dis (2015) 1.10

Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition. Sci Rep (2016) 1.08

Is the abundance of Faecalibacterium prausnitzii relevant to Crohn's disease? FEMS Microbiol Lett (2010) 1.02

Gut dendritic cell activation links an altered colonic microbiome to mucosal and systemic T-cell activation in untreated HIV-1 infection. Mucosal Immunol (2015) 0.99

Stimulation of glutathione peroxidase activity decreases HIV type 1 activation after oxidative stress. AIDS Res Hum Retroviruses (1994) 0.98

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI. Nucleic Acids Res (2015) 0.91

Vitamins C and E in adolescents and young adults with HIV infection. Am J Clin Nutr (2006) 0.87

Modulation of LPS-induced CD4+ T-cell activation and apoptosis by antioxidants in untreated asymptomatic HIV infected participants: an in vitro study. Clin Dev Immunol (2013) 0.83

A quasi-universal medium to break the aerobic/anaerobic bacterial culture dichotomy in clinical microbiology. Clin Microbiol Infect (2015) 0.77