Published in Nat Commun on September 22, 2016
Gene Duplication Analysis Reveals No Ancient Whole Genome Duplication but Extensive Small-Scale Duplications during Genome Evolution and Adaptation of Schistosoma mansoni. Front Cell Infect Microbiol (2017) 0.75
Fasciclin-calcareous corpuscle binary complex mediated protein-protein interactions in Taenia solium metacestode. Parasit Vectors (2017) 0.75
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics (2006) 87.59
Fast gapped-read alignment with Bowtie 2. Nat Methods (2012) 83.79
A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet (2011) 59.36
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86
Versatile and open software for comparing large genomes. Genome Biol (2004) 49.45
De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol (2007) 45.68
ABySS: a parallel assembler for short read sequence data. Genome Res (2009) 43.20
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc (2012) 35.75
MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol (2013) 34.34
OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res (2003) 33.03
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol (2013) 32.42
InterProScan--an integration platform for the signature-recognition methods in InterPro. Bioinformatics (2001) 28.35
An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res (2002) 25.81
The evolutionary fate and consequences of duplicate genes. Science (2000) 24.22
Scaffolding pre-assembled contigs using SSPACE. Bioinformatics (2010) 23.27
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics (2007) 12.21
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res (2003) 11.03
Toward almost closed genomes with GapFiller. Genome Biol (2012) 10.92
Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res (2005) 9.90
BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput Biol (2014) 6.16
The genome of the blood fluke Schistosoma mansoni. Nature (2009) 5.94
Genetic and fossil evidence for the origin of modern humans. Science (1988) 5.78
Mitochondrial diversity and the origins of African and European cattle. Proc Natl Acad Sci U S A (1996) 5.55
Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server. Nucleic Acids Res (2007) 5.29
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol (2008) 3.73
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res (2012) 3.02
CAFE: a computational tool for the study of gene family evolution. Bioinformatics (2006) 3.02
Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution. Proc Natl Acad Sci U S A (2012) 2.54
The genomes of four tapeworm species reveal adaptations to parasitism. Nature (2013) 2.45
Proteases in parasitic diseases. Annu Rev Pathol (2006) 2.26
Ascaris suum draft genome. Nature (2011) 2.16
Genetic characterization of the Asian Taenia, a newly described taeniid cestode of humans. Am J Trop Med Hyg (1994) 2.00
Intestinal cestodes. Curr Opin Infect Dis (2007) 1.94
Neurocysticercosis: a review. Surg Neurol (2005) 1.94
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic Acids Res (2013) 1.83
The cytoskeleton and motor proteins of human schistosomes and their roles in surface maintenance and host-parasite interactions. Bioessays (2004) 1.42
Immunomodulation by helminth parasites: defining mechanisms and mediators. Int J Parasitol (2013) 1.38
Modulation of human immune response by Echinococcus granulosus antigen B and its possible role in evading host defenses. Infect Immun (2001) 1.37
Functions of the tegument of schistosomes: clues from the proteome and lipidome. Int J Parasitol (2006) 1.30
The genome of the hydatid tapeworm Echinococcus granulosus. Nat Genet (2013) 1.29
Gene duplication and speciation in Drosophila: evidence from the Odysseus locus. Proc Natl Acad Sci U S A (2004) 1.26
Cystatins from filarial parasites: evolution, adaptation and function in the host-parasite relationship. Int J Biochem Cell Biol (2007) 1.20
DNA differential diagnosis of human taeniid cestodes by base excision sequence scanning thymine-base reader analysis with mitochondrial genes. J Clin Microbiol (2002) 1.16
Taenia asiatica and Taenia saginata: genetic divergence estimated from their mitochondrial genomes. Exp Parasitol (2006) 1.14
Characterization and cloning of GP50, a Taenia solium antigen diagnostic for cysticercosis. Mol Biochem Parasitol (2004) 1.14
Out of Africa: origins of the Taenia tapeworms in humans. Proc Biol Sci (2001) 1.12
Molecular discrimination of taeniid cestodes. Parasitol Int (2005) 1.11
Complete sequence of the mitochondrial genome of Taenia saginata: comparison with T. solium and T. asiatica. Parasitol Int (2007) 1.07
Comparative analysis of two different subunits of antigen B from Echinococcus granulosus: gene sequences, expression in Escherichia coli and serological evaluation. Acta Trop (2000) 1.07
Natural infections of Asian Taenia saginata metacestodes in the livers of Korean domestic pigs. Kisaengchunghak Chapchi (1992) 0.99
ParaAT: a parallel tool for constructing multiple protein-coding DNA alignments. Biochem Biophys Res Commun (2012) 0.96
Phylogeny of Taenia: Species definitions and origins of human parasites. Parasitol Int (2005) 0.95
Darwin and the recent African origin of modern humans. Proc Natl Acad Sci U S A (2009) 0.95
Epidemiology and genetic diversity of Taenia asiatica: a systematic review. Parasit Vectors (2014) 0.93
Portrait of human tapeworms. J Parasitol (2004) 0.92
Platyhelminth Venom Allergen-Like (VAL) proteins: revealing structural diversity, class-specific features and biological associations across the phylum. Parasitology (2012) 0.92
Understanding the laminated layer of larval Echinococcus II: immunology. Trends Parasitol (2011) 0.89
Comparative genomics of flatworms (platyhelminthes) reveals shared genomic features of ecto- and endoparastic neodermata. Genome Biol Evol (2014) 0.88
Molecular evidence of host influences on the evolution and spread of human tapeworms. Biol Rev Camb Philos Soc (2012) 0.87
The pig tapeworm Taenia solium, the cause of cysticercosis: Biogeographic (temporal and spacial) origins in Madagascar. Mol Phylogenet Evol (2010) 0.85
Lights and shadows of the Taenia asiatica life cycle and pathogenicity. Trop Parasitol (2013) 0.83
Taenia asiatica: the most neglected human Taenia and the possibility of cysticercosis. Korean J Parasitol (2013) 0.81
Genetic variability of the 18 kDa/HP6 protective antigen in Taenia saginata and Taenia asiatica: implications for vaccine development. Mol Biochem Parasitol (2011) 0.78
The tapeworm tegument: a model system for studies on membrane structure and function in host-parasite relationships. Trans Am Microsc Soc (1975) 0.76
Ultrastructure of the proglottid tegument (neodermis) of the cestode Echinophallus wageneri (Pseudophyllidea: Echinophallidae), a parasite of the bathypelagic fish Centrolophus niger. Parasitol Res (2007) 0.76
Toxoplasma gondii Infection in Pregnant Women: A Seroprevalence and Case-Control Study in Eastern China. Biomed Res Int (2015) 1.40
A brief review of software tools for pangenomics. Genomics Proteomics Bioinformatics (2015) 0.90
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res (2014) 0.90
Human pharyngeal microbiome may play a protective role in respiratory tract infections. Genomics Proteomics Bioinformatics (2014) 0.84
Transcriptome dynamics during human erythroid differentiation and development. Genomics (2013) 0.83
First Report of Bovine Leukemia Virus Infection in Yaks (Bos mutus) in China. Biomed Res Int (2016) 0.79
Ribogenomics: the science and knowledge of RNA. Genomics Proteomics Bioinformatics (2014) 0.79
Energy efficiency trade-offs drive nucleotide usage in transcribed regions. Nat Commun (2016) 0.77
Evaluation of Protective Immune Responses Induced by Recombinant TrxLp and ENO2 Proteins against Toxoplasma gondii Infection in BALB/c Mice. Biomed Res Int (2016) 0.75
Adolescent mouse takes on an active transcriptomic expression during postnatal cerebral development. Genomics Proteomics Bioinformatics (2014) 0.75
Ascarosides coordinate the dispersal of a plant-parasitic nematode with the metamorphosis of its vector beetle. Nat Commun (2016) 0.75
De novo Transcriptome Analysis Reveals Distinct Defense Mechanisms by Young and Mature Leaves of Hevea brasiliensis (Para Rubber Tree). Sci Rep (2016) 0.75