Published in Biophysics (Nagoya-shi) on September 04, 2007
Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88
Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89
Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74
High density synthetic oligonucleotide arrays. Nat Genet (1999) 29.99
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci U S A (1998) 24.28
A model of molecular interactions on short oligonucleotide microarrays. Nat Biotechnol (2003) 9.98
Comparison of Affymetrix GeneChip expression measures. Bioinformatics (2006) 7.49
Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays. Genome Biol (2001) 7.01
DNA hybridization to mismatched templates: a chip study. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 6.05
Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 5.28
Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Res (2003) 5.13
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends Genet (2005) 4.56
Resequencing and mutational analysis using oligonucleotide microarrays. Nat Genet (1999) 3.95
Applications of DNA tiling arrays for whole-genome analysis. Genomics (2005) 3.94
Optimization of oligonucleotide-based DNA microarrays. Nucleic Acids Res (2002) 3.36
Empirical establishment of oligonucleotide probe design criteria. Appl Environ Microbiol (2005) 2.65
Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping. Trends Genet (2005) 2.36
Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression. Nucleic Acids Res (2004) 1.87
Sequence dependence of cross-hybridization on short oligo microarrays. Nucleic Acids Res (2005) 1.82
Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis. BMC Bioinformatics (2002) 1.56
Specific and nonspecific hybridization of oligonucleotide probes on microarrays. Biophys J (2005) 1.33
Sequence variation in genes and genomic DNA: methods for large-scale analysis. Annu Rev Genomics Hum Genet (2000) 1.24
Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays. Nucleic Acids Res (2005) 1.20
Secondary structure in the target as a confounding factor in synthetic oligomer microarray design. BMC Genomics (2005) 1.17
Gene expression microarrays and the integration of biological knowledge. Trends Biotechnol (2001) 1.16
Use of microarrays with different probe sizes for monitoring gene expression. Appl Environ Microbiol (2005) 0.95
Effects of DNA secondary structure on oligonucleotide probe binding efficiency. Comput Biol Chem (2005) 0.93
Reproducible and inexpensive probe preparation for oligonucleotide arrays. Nucleic Acids Res (2001) 0.84
Ubiquity of log-normal distributions in intra-cellular reaction dynamics. Biophysics (Nagoya-shi) (2005) 0.82
Inherent characteristics of gene expression for buffering environmental changes without the corresponding transcriptional regulations. Biophysics (Nagoya-shi) (2006) 0.75