Published in Nucleic Acids Res on July 08, 2004
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Res (2009) 3.50
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Basic concepts of microarrays and potential applications in clinical microbiology. Clin Microbiol Rev (2009) 1.70
Duplicate genes increase expression diversity in closely related species and allopolyploids. Proc Natl Acad Sci U S A (2009) 1.52
A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets. Nucleic Acids Res (2008) 1.47
Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy. BMC Bioinformatics (2007) 1.45
Physico-chemical foundations underpinning microarray and next-generation sequencing experiments. Nucleic Acids Res (2013) 1.25
An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations. Genome Biol (2011) 1.24
Quantitative assessment of a novel flow-through porous microarray for the rapid analysis of gene expression profiles. Nucleic Acids Res (2004) 1.22
A dual-tag microarray platform for high-performance nucleic acid and protein analyses. Nucleic Acids Res (2008) 1.20
Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice. Plant Methods (2008) 1.20
Secondary structure in the target as a confounding factor in synthetic oligomer microarray design. BMC Genomics (2005) 1.17
Increasing the sensitivity of DNA microarrays by metal-enhanced fluorescence using surface-bound silver nanoparticles. Nucleic Acids Res (2006) 1.16
Microarray-based ultra-high resolution discovery of genomic deletion mutations. BMC Genomics (2014) 1.09
Model-based probe set optimization for high-performance microarrays. Nucleic Acids Res (2008) 1.08
Efficiency, error and yield in light-directed maskless synthesis of DNA microarrays. J Nanobiotechnology (2011) 1.07
A multivariate prediction model for microarray cross-hybridization. BMC Bioinformatics (2006) 1.07
Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum. Genomics (2009) 1.06
CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes. BMC Bioinformatics (2007) 1.06
A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray. BMC Genomics (2006) 1.05
Design of microarray probes for virus identification and detection of emerging viruses at the genus level. BMC Bioinformatics (2006) 1.00
The incredible shrinking world of DNA microarrays. Mol Biosyst (2008) 0.98
Differential regulation of Listeria monocytogenes internalin and internalin-like genes by sigmaB and PrfA as revealed by subgenomic microarray analyses. Foodborne Pathog Dis (2008) 0.95
Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants. Plant Methods (2006) 0.91
Real-time fluorescent image analysis of DNA spot hybridization kinetics to assess microarray spot heterogeneity. Anal Chem (2012) 0.89
A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina. BMC Res Notes (2010) 0.84
Application of equilibrium models of solution hybridization to microarray design and analysis. PLoS One (2010) 0.83
Computer simulation study of molecular recognition in model DNA microarrays. Biophys J (2006) 0.83
Detecting novel genes with sparse arrays. Gene (2010) 0.83
Design and analysis of mismatch probes for long oligonucleotide microarrays. BMC Genomics (2008) 0.82
Unrestricted accessibility of short oligonucleotides to RNA. RNA (2005) 0.82
Development of magnetic capture hybridization and quantitative polymerase chain reaction for hepatitis B virus covalently closed circular DNA. Hepat Mon (2015) 0.81
Highly specific SNP detection using 2D graphene electronics and DNA strand displacement. Proc Natl Acad Sci U S A (2016) 0.79
Evaluating oligonucleotide properties for DNA microarray probe design. Nucleic Acids Res (2010) 0.79
Microarray probes and probe sets. Front Biosci (Elite Ed) (2010) 0.79
Enzymatic synthesis of structure-free DNA with pseudo-complementary properties. Nucleic Acids Res (2008) 0.79
Quantitative measurement of pathogen-specific human memory T cell repertoire diversity using a CDR3 beta-specific microarray. BMC Genomics (2007) 0.77
Simultaneous Detection of Five Pathogens from Cerebrospinal Fluid Specimens Using Luminex Technology. Int J Environ Res Public Health (2016) 0.76
Properties of pseudo-complementary DNA substituted with weakly pairing analogs of guanine or cytosine. Nucleic Acids Res (2008) 0.76
Sexual Dimorphism and Aging in the Human Hyppocampus: Identification, Validation, and Impact of Differentially Expressed Genes by Factorial Microarray and Network Analysis. Front Aging Neurosci (2016) 0.76
A Java-based tool for the design of classification microarrays. BMC Bioinformatics (2008) 0.76
A universal oligonucleotide microarray with a minimal number of probes for the detection and identification of viroids at the genus level. PLoS One (2013) 0.76
Global assessment of cross-hybridization for oligonucleotide arrays. J Biomol Tech (2006) 0.76
An efficient algorithm for the stochastic simulation of the hybridization of DNA to microarrays. BMC Bioinformatics (2009) 0.75
Influence of the length of target DNA overhang proximal to the array surface on discrimination of single-base mismatches on a 25-mer oligonucleotide array. BMC Res Notes (2014) 0.75
Development of a highly specific amine-terminated aptamer functionalized surface plasmon resonance biosensor for blood protein detection. Biomed Opt Express (2011) 0.75
Simultaneous Detection of Nine Key Bacterial Respiratory Pathogens Using Luminex xTAG(®) Technology. Int J Environ Res Public Health (2017) 0.75
Methodological approaches to cytochrome P450 profiling in embryos. Methods Mol Biol (2012) 0.75
Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide. Biophysics (Nagoya-shi) (2007) 0.75
Entrainment of Breast Cell Lines Results in Rhythmic Fluctuations of MicroRNAs. Int J Mol Sci (2017) 0.75
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A genomic view of alternative splicing. Nat Genet (2002) 12.62
A concise guide to cDNA microarray analysis. Biotechniques (2000) 8.36
Evaluation of gene expression measurements from commercial microarray platforms. Nucleic Acids Res (2003) 8.08
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Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation. Genome Res (2003) 7.86
Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics (2002) 7.07
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array. Nat Biotechnol (2000) 6.36
Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res (2000) 6.20
Selection of optimal DNA oligos for gene expression arrays. Bioinformatics (2001) 5.19
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Optimization of oligonucleotide-based DNA microarrays. Nucleic Acids Res (2002) 3.36
Spotted long oligonucleotide arrays for human gene expression analysis. Genome Res (2003) 2.95
Options available--from start to finish--for obtaining data from DNA microarrays II. Nat Genet (2002) 2.62
Microarray-based analysis of gene expression in very large gene families: the cytochrome P450 gene superfamily of Arabidopsis thaliana. Gene (2001) 1.67
Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays. Biotechniques (2001) 1.56
An open-source oligomicroarray standard for human and mouse. Nat Biotechnol (2002) 1.54
Enhanced discrimination of single nucleotide polymorphisms by artificial mismatch hybridization. Nat Biotechnol (1997) 1.53
High throughput parallel synthesis of oligonucleotides with 1536 channel synthesizer. Nucleic Acids Res (2002) 0.97
A five-gene signature and clinical outcome in non-small-cell lung cancer. N Engl J Med (2007) 10.47
Tumor-associated macrophages: the double-edged sword in cancer progression. J Clin Oncol (2004) 2.26
Single-walled carbon nanotubes can induce pulmonary injury in mouse model. Nano Lett (2008) 1.70
MicroRNA expression aberration as potential peripheral blood biomarkers for schizophrenia. PLoS One (2011) 1.47
Genomic analysis of smooth muscle cells in 3-dimensional collagen matrix. FASEB J (2002) 1.33
Prognosis of non-small cell lung cancer patients by detecting circulating cancer cells in the peripheral blood with multiple marker genes. Clin Cancer Res (2005) 1.17
Changes in gene expression profiles of human fibroblasts in response to sodium arsenite treatment. Carcinogenesis (2002) 1.16
Design and assessment of a fast algorithm for identifying specific probes for human and mouse genes. Bioinformatics (2003) 1.09
Evaluation of pulsed-field gel electrophoresis profiles for identification of Salmonella serotypes. J Clin Microbiol (2010) 1.08
A multivariate prediction model for microarray cross-hybridization. BMC Bioinformatics (2006) 1.07
Genomics and proteomics of immune modulatory effects of a butanol fraction of echinacea purpurea in human dendritic cells. BMC Genomics (2008) 1.07
Differential gene expression in gram-negative and gram-positive sepsis. Am J Respir Crit Care Med (2004) 1.05
Using endophenotypes for pathway clusters to map complex disease genes. Genet Epidemiol (2006) 1.04
Anti-diabetic properties of three common Bidens pilosa variants in Taiwan. Phytochemistry (2009) 1.03
Enhancement of aptamer microarray sensitivity through spacer optimization and avidity effect. Anal Chem (2009) 1.01
RASD2, MYH9, and CACNG2 genes at chromosome 22q12 associated with the subgroup of schizophrenia with non-deficit in sustained attention and executive function. Biol Psychiatry (2008) 1.00
Design of microarray probes for virus identification and detection of emerging viruses at the genus level. BMC Bioinformatics (2006) 1.00
Mixed sequence reader: a program for analyzing DNA sequences with heterozygous base calling. ScientificWorldJournal (2012) 0.99
LOHAS: loss-of-heterozygosity analysis suite. Genet Epidemiol (2011) 0.99
High throughput parallel synthesis of oligonucleotides with 1536 channel synthesizer. Nucleic Acids Res (2002) 0.97
Identification and characterization of oligonucleotides that inhibit Toll-like receptor 2-associated immune responses. FASEB J (2009) 0.96
Molecular signature of clinical severity in recovering patients with severe acute respiratory syndrome coronavirus (SARS-CoV). BMC Genomics (2005) 0.95
A single nucleotide polymorphism fine mapping study of chromosome 1q42.1 reveals the vulnerability genes for schizophrenia, GNPAT and DISC1: Association with impairment of sustained attention. Biol Psychiatry (2006) 0.92
Gene selection for sample classifications in microarray experiments. DNA Cell Biol (2004) 0.92
Morus alba and active compound oxyresveratrol exert anti-inflammatory activity via inhibition of leukocyte migration involving MEK/ERK signaling. BMC Complement Altern Med (2013) 0.89
Factors related to perceived needs of primary caregivers of patients with schizophrenia. J Formos Med Assoc (2008) 0.88
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles. BMC Bioinformatics (2008) 0.88
Human kallikrein 8 protease confers a favorable clinical outcome in non-small cell lung cancer by suppressing tumor cell invasiveness. Cancer Res (2006) 0.87
Increased gene expression of FOXP1 in patients with autism spectrum disorders. Mol Autism (2013) 0.86
Analysis of human meiotic recombination events with a parent-sibling tracing approach. BMC Genomics (2011) 0.86
A method for analyzing censored survival phenotype with gene expression data. BMC Bioinformatics (2008) 0.86
Analysis of protein-protein interactions in cross-talk pathways reveals CRKL protein as a novel prognostic marker in hepatocellular carcinoma. Mol Cell Proteomics (2013) 0.84
Gene selection with multiple ordering criteria. BMC Bioinformatics (2007) 0.84
Preservation of ranking order in the expression of human Housekeeping genes. PLoS One (2011) 0.84
Comparative metabolomics approach coupled with cell- and gene-based assays for species classification and anti-inflammatory bioactivity validation of Echinacea plants. J Nutr Biochem (2009) 0.83
Matching gene activity with physiological functions. Proc Natl Acad Sci U S A (2002) 0.83
CGcgh: a tool for molecular karyotyping using DNA microarray-based comparative genomic hybridization (array-CGH). J Biomed Sci (2008) 0.82
Symptom patterns and subgrouping of schizophrenic patients: significance of negative symptoms assessed on admission. Schizophr Res (2002) 0.82
Suppression of growth and cancer-induced angiogenesis of aggressive human breast cancer cells (MDA-MB-231) on the chorioallantoic membrane of developing chicken embryos by E-peptide of pro-IGF-I. J Cell Biochem (2007) 0.82
Multi-class clustering and prediction in the analysis of microarray data. Math Biosci (2004) 0.81
Involvement of prohibitin upregulation in abrin-triggered apoptosis. Evid Based Complement Alternat Med (2011) 0.80
Integrative analysis of single nucleotide polymorphisms and gene expression efficiently distinguishes samples from closely related ethnic populations. BMC Genomics (2012) 0.80
SCUBE3 regulation of early lung cancer angiogenesis and metastatic progression. Clin Exp Metastasis (2013) 0.79
Microarray labeling extension values: laboratory signatures for Affymetrix GeneChips. Nucleic Acids Res (2009) 0.78
The DAO gene is associated with schizophrenia and interacts with other genes in the Taiwan Han Chinese population. PLoS One (2013) 0.78
A new nucleic acid-based agent inhibits cytotoxic T lymphocyte-mediated immune disorders. J Allergy Clin Immunol (2013) 0.78
Screening CYP3A single nucleotide polymorphisms in a Han Chinese population with a genotyping chip. Pharmacogenomics (2005) 0.77
Cartridge-based high-throughput purification of oligonucleotides for reliable oligonucleotide arrays. Anal Biochem (2006) 0.77
SAQC: SNP array quality control. BMC Bioinformatics (2011) 0.77
Differential network biology reveals a positive correlation between a novel protein-protein interaction and cancer cells migration. Conf Proc IEEE Eng Med Biol Soc (2013) 0.76
Aptamer microarray as a novel bioassay for protein-protein interaction discovery and analysis. Biosens Bioelectron (2012) 0.76
Selection of aptamers targeting the sialic acid receptor of hemagglutinin by epitope-specific SELEX. Chem Commun (Camb) (2014) 0.76
Using an in situ proximity ligation assay to systematically profile endogenous protein-protein interactions in a pathway network. J Proteome Res (2014) 0.76
Development of a brief self-report questionnaire for screening putative pre-psychotic states. Schizophr Res (2012) 0.76
Recursive feature selection with significant variables of support vectors. Comput Math Methods Med (2012) 0.75
Verifying expressed transcript variants by detecting and assembling stretches of consecutive exons. Nucleic Acids Res (2010) 0.75
Rapid and sensitive detection of multiple genes from the SARS-coronavirus using quantitative RT-PCR with dual systems. J Med Virol (2005) 0.75
SARS-CoV infection was from at least two origins in the Taiwan area. Intervirology (2005) 0.75
Medium-term course and outcome of schizophrenia depicted by the sixth-month subtype after an acute episode. J Formos Med Assoc (2012) 0.75
A Deep Generative Model for Reordering Adjacency Matrices. IEEE Trans Vis Comput Graph (2022) 0.75
Design and fabrication of spotted long oligonucleotide microarrays for gene expression analysis. Methods Mol Biol (2007) 0.75
Unraveling virus identity by detection of depleted probes with capillary electrophoresis. Anal Chim Acta (2012) 0.75
Brain responses of explicit and implicit memory: An event-related potential study. Neuroreport (2006) 0.75