An optimistic protein assembly from sequence reads salvaged an uncharacterized segment of mouse picobirnavirus.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 28071766)

Published in Sci Rep on January 10, 2017

Authors

Gabriel Gonzalez1, Michihito Sasaki2, Lucy Burkitt-Gray3, Tomonori Kamiya4, Noriko M Tsuji4, Hirofumi Sawa2,5,6, Kimihito Ito1

Author Affiliations

1: Bioinformatics Division, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
2: Department of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan.
3: UCD Conway Institute of Biomolecular and Biomedical Science, University College Dublin, Dublin, Ireland.
4: Immune Homeostasis Laboratory, Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan.
5: Global Institution for Collaborative Research and Education, Hokkaido University, Sapporo, Japan.
6: Global Virus Network, Baltimore, MD, USA.

Articles cited by this

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12

Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol (2013) 112.81

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res (2002) 47.62

The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci (1992) 44.38

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol (2010) 39.63

An improved general amino acid replacement matrix. Mol Biol Evol (2008) 9.36

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics (2012) 8.61

Integrative analysis of environmental sequences using MEGAN4. Genome Res (2011) 8.60

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2014) 3.55

Fast and sensitive protein alignment using DIAMOND. Nat Methods (2014) 3.22

The fecal viral flora of wild rodents. PLoS Pathog (2011) 2.51

Natural selection on the influenza virus genome. Mol Biol Evol (2006) 1.47

Complete nucleotide sequences of two RNA segments of human picobirnavirus. J Virol Methods (2005) 1.24

Novel viruses in human faeces. Lancet (1988) 1.21

The picobirnavirus crystal structure provides functional insights into virion assembly and cell entry. EMBO J (2009) 1.10

Faecal virome of cats in an animal shelter. J Gen Virol (2014) 1.04

Nomenclature proposal for picobirnavirus. Arch Virol (2009) 0.99

Molecular characterization of picobirnaviruses from new hosts. Virus Res (2009) 0.95

Molecular characterization of full-length genomic segment 2 of a bovine picobirnavirus (PBV) strain: evidence for high genetic diversity with genogroup I PBVs. J Gen Virol (2009) 0.91

Metagenomic analysis of the shrew enteric virome reveals novel viruses related to human stool-associated viruses. J Gen Virol (2014) 0.84

Picobirnaviruses encode a protein with repeats of the ExxRxNxxxE motif. Virus Res (2011) 0.83

Epidemiology, phylogeny, and evolution of emerging enteric Picobirnaviruses of animal origin and their relationship to human strains. Biomed Res Int (2014) 0.82

Animal picobirnavirus. Virusdisease (2014) 0.81

Interregional Coevolution Analysis Revealing Functional and Structural Interrelatedness between Different Genomic Regions in Human Mastadenovirus D. J Virol (2015) 0.77

ELM: enhanced lowest common ancestor based method for detecting a pathogenic virus from a large sequence dataset. BMC Bioinformatics (2014) 0.77