A role for the base excision repair enzyme NEIL3 in replication-dependent repair of interstrand DNA cross-links derived from psoralen and abasic sites.

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Published in DNA Repair (Amst) on February 20, 2017

Authors

Zhiyu Yang1, Maryam Imani Nejad1, Jacqueline Gamboa Varela1, Nathan E Price2, Yinsheng Wang2, Kent S Gates3

Author Affiliations

1: University of Missouri Department of Chemistry, 125 Chemistry Building Columbia, MO 65211, United States.
2: University of California-Riverside, Department of Chemistry, 501 Big Springs Road Riverside, CA 92521-0403, United States.
3: University of Missouri Department of Chemistry, 125 Chemistry Building Columbia, MO 65211, United States; University of Missouri Department of Biochemistry, 125 Chemistry Building Columbia, MO 65211, United States. Electronic address: gatesk@missouri.edu.

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Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature (1953) 47.27

DNA glycosylases, endonucleases for apurinic/apyrimidinic sites, and base excision-repair. Prog Nucleic Acid Res Mol Biol (1979) 8.01

DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli. J Biol Chem (1977) 7.24

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The ATM protein kinase: regulating the cellular response to genotoxic stress, and more. Nat Rev Mol Cell Biol (2013) 5.33

APOBEC3B is an enzymatic source of mutation in breast cancer. Nature (2013) 5.18

Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase. Proc Natl Acad Sci U S A (2003) 4.89

The Fanconi anemia pathway promotes replication-dependent DNA interstrand cross-link repair. Science (2009) 4.85

Mechanism of replication-coupled DNA interstrand crosslink repair. Cell (2008) 4.53

DNA interstrand crosslink repair and cancer. Nat Rev Cancer (2011) 4.29

Mutations of the SLX4 gene in Fanconi anemia. Nat Genet (2011) 3.60

Fanconi anaemia and the repair of Watson and Crick DNA crosslinks. Nature (2013) 3.40

Chemistry of Glycosylases and Endonucleases Involved in Base-Excision Repair. Chem Rev (1998) 2.93

Formation and repair of interstrand cross-links in DNA. Chem Rev (2006) 2.91

"Reversible" DNA. Proc Natl Acad Sci U S A (1961) 2.85

A mechanistic perspective on the chemistry of DNA repair glycosylases. Chem Rev (2003) 2.84

FAN1 acts with FANCI-FANCD2 to promote DNA interstrand cross-link repair. Science (2010) 2.80

Fanconi anemia (cross)linked to DNA repair. Cell (2005) 2.78

Abasic sites in DNA: repair and biological consequences in Saccharomyces cerevisiae. DNA Repair (Amst) (2004) 2.71

Repair of an interstrand DNA cross-link initiated by ERCC1-XPF repair/recombination nuclease. J Biol Chem (2000) 2.60

Repair of oxidized bases in DNA bubble structures by human DNA glycosylases NEIL1 and NEIL2. J Biol Chem (2003) 2.53

The major human abasic endonuclease: formation, consequences and repair of abasic lesions in DNA. Mutat Res (2001) 2.49

Endogenous apurinic/apyrimidinic sites in genomic DNA of mammalian tissues. Cancer Res (1999) 2.43

Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision. Cell (1998) 2.41

Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG. Proc Natl Acad Sci U S A (2000) 2.36

Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition. Cell (1995) 2.36

DNA interstrand crosslinks: natural and drug-induced DNA adducts that induce unique cellular responses. Chembiochem (2005) 2.28

Repair of endogenous DNA damage. Cold Spring Harb Symp Quant Biol (2000) 2.24

DNA Cross-Linking Agents as Antitumor Drugs. Chem Rev (1998) 2.17

Replication fork reversal and the maintenance of genome stability. Nucleic Acids Res (2009) 2.06

Mechanism of RAD51-dependent DNA interstrand cross-link repair. Science (2011) 2.04

Base excision repair. Cold Spring Harb Perspect Biol (2013) 1.91

An overview of chemical processes that damage cellular DNA: spontaneous hydrolysis, alkylation, and reactions with radicals. Chem Res Toxicol (2009) 1.85

Recruitment of fanconi anemia and breast cancer proteins to DNA damage sites is differentially governed by replication. Mol Cell (2009) 1.85

DNA interstrand crosslink repair in mammalian cells: step by step. Crit Rev Biochem Mol Biol (2010) 1.82

Mammalian base excision repair: the forgotten archangel. Nucleic Acids Res (2013) 1.79

Involvement of nucleotide excision repair in a recombination-independent and error-prone pathway of DNA interstrand cross-link repair. Mol Cell Biol (2001) 1.76

DNA adducts from chemotherapeutic agents. Mutat Res (1996) 1.73

DNA damage sensing by the ATM and ATR kinases. Cold Spring Harb Perspect Biol (2013) 1.72

Repair of abasic sites in DNA. Mutat Res (2003) 1.71

A coming-of-age story: activation-induced cytidine deaminase turns 10. Nat Immunol (2009) 1.68

Genotype-phenotype correlations in Fanconi anemia. Mutat Res (2009) 1.65

XPF-ERCC1 acts in Unhooking DNA interstrand crosslinks in cooperation with FANCD2 and FANCP/SLX4. Mol Cell (2014) 1.65

The mouse ortholog of NEIL3 is a functional DNA glycosylase in vitro and in vivo. Proc Natl Acad Sci U S A (2010) 1.61

Interstrand DNA cross-links induced by alpha,beta-unsaturated aldehydes derived from lipid peroxidation and environmental sources. Acc Chem Res (2008) 1.60

hMutSbeta is required for the recognition and uncoupling of psoralen interstrand cross-links in vitro. Mol Cell Biol (2002) 1.58

Differential roles for DNA polymerases eta, zeta, and REV1 in lesion bypass of intrastrand versus interstrand DNA cross-links. Mol Cell Biol (2009) 1.54

Isolation and identification of cross-links from formaldehyde-treated nucleic acids. Biochemistry (1980) 1.52

XPF-ERCC1 participates in the Fanconi anemia pathway of cross-link repair. Mol Cell Biol (2009) 1.50

The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions. Nature (2015) 1.48

S. cerevisiae has three pathways for DNA interstrand crosslink repair. Mutat Res (2001) 1.48

Human SNM1A and XPF-ERCC1 collaborate to initiate DNA interstrand cross-link repair. Genes Dev (2011) 1.46

Advances in understanding the complex mechanisms of DNA interstrand cross-link repair. Cold Spring Harb Perspect Biol (2013) 1.45

Quantitative measurement of translesion replication in human cells: evidence for bypass of abasic sites by a replicative DNA polymerase. Proc Natl Acad Sci U S A (2002) 1.44

NMR structures of damaged DNA. Chem Rev (2006) 1.41

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Oxygen independent DNA interstrand cross-link formation by a nucleotide radical. J Am Chem Soc (2006) 1.38

Induction of DNA replication-mediated double strand breaks by psoralen DNA interstrand cross-links. J Biol Chem (2002) 1.36

Mouse SLX4 is a tumor suppressor that stimulates the activity of the nuclease XPF-ERCC1 in DNA crosslink repair. Mol Cell (2014) 1.34

DNA polymerase zeta cooperates with polymerases kappa and iota in translesion DNA synthesis across pyrimidine photodimers in cells from XPV patients. Proc Natl Acad Sci U S A (2009) 1.34

Interstrand cross-links generated by abasic sites in duplex DNA. J Am Chem Soc (2007) 1.34

The DNA translocase FANCM/MHF promotes replication traverse of DNA interstrand crosslinks. Mol Cell (2013) 1.32

Histone chaperone activity of Fanconi anemia proteins, FANCD2 and FANCI, is required for DNA crosslink repair. EMBO J (2012) 1.30

Recent advances in the structural mechanisms of DNA glycosylases. Biochim Biophys Acta (2012) 1.30

Mechanism and regulation of incisions during DNA interstrand cross-link repair. DNA Repair (Amst) (2014) 1.27

Generation of DNA interstrand cross-links by post-synthetic reductive amination. Org Lett (2009) 1.26

Investigation of the mechanisms of DNA binding of the human G/T glycosylase using designed inhibitors. Proc Natl Acad Sci U S A (1997) 1.25

Cisplatin sensitivity of testis tumour cells is due to deficiency in interstrand-crosslink repair and low ERCC1-XPF expression. Mol Cancer (2010) 1.22

Substrate binding by adenosine deaminase. Specificity, pH dependence, and competition by mercurials. J Biol Chem (1967) 1.18

Catalytic promiscuity and the divergent evolution of DNA repair enzymes. Chem Rev (2006) 1.18

On the formation and properties of interstrand DNA-DNA cross-links forged by reaction of an abasic site with the opposing guanine residue of 5'-CAp sequences in duplex DNA. J Am Chem Soc (2013) 1.17

Recognition and processing of a new repertoire of DNA substrates by human 3-methyladenine DNA glycosylase (AAG). Biochemistry (2009) 1.16

The architecture of a eukaryotic replisome. Nat Struct Mol Biol (2015) 1.15

BRCA1 promotes unloading of the CMG helicase from a stalled DNA replication fork. Mol Cell (2014) 1.14

AP lyases and dRPases: commonality of mechanism. Mutat Res (2000) 1.13

Scope and mechanism of interstrand cross-link formation by the C4'-oxidized abasic site. J Am Chem Soc (2009) 1.12

Translesion synthesis across abasic lesions by human B-family and Y-family DNA polymerases α, δ, η, ι, κ, and REV1. J Mol Biol (2010) 1.12

Synthesis and characterization of DNA duplexes containing an N(4)C-ethyl-N(4)C interstrand cross-link. J Am Chem Soc (2001) 1.12

Using synthetic DNA interstrand crosslinks to elucidate repair pathways and identify new therapeutic targets for cancer chemotherapy. Cell Mol Life Sci (2010) 1.12

An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA. Proc Natl Acad Sci U S A (2007) 1.10

Role of homologous recombination in DNA interstrand crosslink repair. Environ Mol Mutagen (2010) 1.10

DNA interstrand cross-link repair requires replication-fork convergence. Nat Struct Mol Biol (2015) 1.09

Interstrand psoralen cross-links do not introduce appreciable bends in DNA. Biochemistry (1984) 1.08

Base excision repair: a critical player in many games. DNA Repair (Amst) (2014) 1.08

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The Fanconi anaemia pathway: new players and new functions. Nat Rev Mol Cell Biol (2016) 1.07

The role of BRCA2 in replication-coupled DNA interstrand cross-link repair in vitro. Nat Struct Mol Biol (2006) 1.06

Enhanced repair of DNA interstrand crosslinking in ovarian cancer cells from patients following treatment with platinum-based chemotherapy. Br J Cancer (2007) 1.06

Cyclophosphamide resistance in medulloblastoma. Cancer Res (1992) 1.06

Novel role of base excision repair in mediating cisplatin cytotoxicity. J Biol Chem (2011) 1.04

Direct demonstration in synthetic oligonucleotides that N,N'-bis(2-chloroethyl)-nitrosourea cross links N1 of deoxyguanosine to N3 of deoxycytidine on opposite strands of duplex DNA. Cancer Res (1999) 1.04

Prereplicative repair of oxidized bases in the human genome is mediated by NEIL1 DNA glycosylase together with replication proteins. Proc Natl Acad Sci U S A (2013) 1.04

Interstrand DNA-DNA cross-link formation between adenine residues and abasic sites in duplex DNA. J Am Chem Soc (2014) 1.04

Endonuclease VIII-like 3 (Neil3) DNA glycosylase promotes neurogenesis induced by hypoxia-ischemia. Proc Natl Acad Sci U S A (2011) 1.04

Cryo-EM structures of the eukaryotic replicative helicase bound to a translocation substrate. Nat Commun (2016) 1.04

What is the DNA repair defect underlying Fanconi anemia? Curr Opin Cell Biol (2015) 1.03

Synthetic substrate analogs for the RNA-editing adenosine deaminase ADAR-2. Nucleic Acids Res (1999) 1.03

Beyond DNA cross-linking: history and prospects of DNA-targeted cancer treatment--fifteenth Bruce F. Cain Memorial Award Lecture. Cancer Res (1996) 1.02

Endogenous Formaldehyde Is a Hematopoietic Stem Cell Genotoxin and Metabolic Carcinogen. Mol Cell (2015) 1.02