Published in Proc Natl Acad Sci U S A on March 31, 2017
VMD: visual molecular dynamics. J Mol Graph (1996) 117.02
The long-range interaction landscape of gene promoters. Nature (2012) 9.20
Dynamic binding of histone H1 to chromatin in living cells. Nature (2000) 4.91
Non-transcriptional control of DNA replication by c-Myc. Nature (2007) 4.55
CTCF: an architectural protein bridging genome topology and function. Nat Rev Genet (2014) 3.64
Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Mol Microbiol (2012) 2.07
Dynamic regulation of transcriptional states by chromatin and transcription factors. Nat Rev Genet (2013) 1.75
Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts. J Mol Biol (1996) 1.74
Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis. J Mol Biol (2006) 1.73
Micromechanical analysis of the binding of DNA-bending proteins HMGB1, NHP6A, and HU reveals their ability to form highly stable DNA-protein complexes. Biochemistry (2004) 1.69
Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA. Nucleic Acids Res (2010) 1.69
The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev (2010) 1.55
Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast. Nucleic Acids Res (2010) 1.48
Thermodynamic extent of counterion release upon binding oligolysines to single-stranded nucleic acids. Proc Natl Acad Sci U S A (1990) 1.45
DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis. PLoS One (2016) 1.41
The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding. J Mol Biol (2002) 1.39
Simple simulations of DNA condensation. Biophys J (2001) 1.36
Interpreting protein/DNA interactions: distinguishing specific from non-specific and electrostatic from non-electrostatic components. Nucleic Acids Res (2010) 1.29
Concentration-dependent exchange of replication protein A on single-stranded DNA revealed by single-molecule imaging. PLoS One (2014) 1.26
Enzymatic oxygen scavenging for photostability without pH drop in single-molecule experiments. ACS Nano (2012) 1.20
Alternative to the steady-state method: derivation of reaction rates from first-passage times and pathway probabilities. Proc Natl Acad Sci U S A (1987) 1.14
Salt dependence of DNA binding by Thermus aquaticus and Escherichia coli DNA polymerases. J Biol Chem (2002) 1.13
Direct substitution and assisted dissociation pathways for turning off transcription by a MerR-family metalloregulator. Proc Natl Acad Sci U S A (2012) 1.12
Nucleosomes accelerate transcription factor dissociation. Nucleic Acids Res (2013) 1.07
Transcriptional regulation of human DNA repair genes following genotoxic stress: trigger mechanisms, inducible responses and genotoxic adaptation. Nucleic Acids Res (2013) 1.03
Multiple-binding-site mechanism explains concentration-dependent unbinding rates of DNA-binding proteins. Nucleic Acids Res (2014) 1.02
Mechanism of interaction between single-stranded DNA binding protein and DNA. Biochemistry (2010) 1.01
Direct observation of a transient ternary complex during IκBα-mediated dissociation of NF-κB from DNA. Proc Natl Acad Sci U S A (2013) 0.98
DNA compaction by the nuclear factor-Y. Biophys J (2007) 0.97
Molecular stripping in the NF-κB/IκB/DNA genetic regulatory network. Proc Natl Acad Sci U S A (2015) 0.93
Intracellular concentrations of 65 species of transcription factors with known regulatory functions in Escherichia coli. J Bacteriol (2014) 0.92
DNA concentration-dependent dissociation of EcoRI: direct transfer or reaction during hopping. Biophys J (2013) 0.90
Concentration- and chromosome-organization-dependent regulator unbinding from DNA for transcription regulation in living cells. Nat Commun (2015) 0.90
Transcriptional Regulators Compete with Nucleosomes Post-replication. Cell (2016) 0.88
Preparing sample chambers for single-molecule FRET. Cold Spring Harb Protoc (2012) 0.86
A general mechanism for competitor-induced dissociation of molecular complexes. Nat Commun (2014) 0.86
Multivalency governs HP1α association dynamics with the silent chromatin state. Nat Commun (2015) 0.85
Stochastic ratchet mechanisms for replacement of proteins bound to DNA. Phys Rev Lett (2014) 0.85
Nuclear localization of the Saccharomyces cerevisiae HMG protein NHP6A occurs by a Ran-independent nonclassical pathway. Traffic (2001) 0.84
Biophysics of protein-DNA interactions and chromosome organization. Physica A (2015) 0.81
Stability versus exchange: a paradox in DNA replication. Nucleic Acids Res (2016) 0.80
Facilitated Dissociation of a Nucleoid Protein from the Bacterial Chromosome. J Bacteriol (2016) 0.80
DNA-Segment-Facilitated Dissociation of Fis and NHP6A from DNA Detected via Single-Molecule Mechanical Response. J Mol Biol (2015) 0.80
Single-molecule FRET analysis of DNA binding and bending by yeast HMGB protein Nhp6A. Nucleic Acids Res (2012) 0.78
Molecular Mechanism of Facilitated Dissociation of Fis Protein from DNA. J Am Chem Soc (2016) 0.78
Genome-wide binding studies reveal DNA binding specificity mechanisms and functional interplay amongst Forkhead transcription factors. Nucleic Acids Res (2015) 0.77
Exchange between Escherichia coli polymerases II and III on a processivity clamp. Nucleic Acids Res (2015) 0.77
Facilitated Dissociation Kinetics of Dimeric Nucleoid-Associated Proteins Follow a Universal Curve. Biophys J (2016) 0.76
Chromatin and lamin A determine two different mechanical response regimes of the cell nucleus. Mol Biol Cell (2017) 0.84