Software for genome mapping by fingerprinting techniques.

PubWeight™: 3.67‹?› | Rank: Top 1%

🔗 View Article (PMID 2838135)

Published in Comput Appl Biosci on March 01, 1988

Authors

J Sulston1, F Mallett, R Staden, R Durbin, T Horsnell, A Coulson

Author Affiliations

1: MRC Laboratory of Molecular Biology, Cambridge, UK.

Articles citing this

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol (2003) 13.32

High throughput fingerprint analysis of large-insert clones. Genome Res (1997) 6.91

Contigs built with fingerprints, markers, and FPC V4.7. Genome Res (2000) 5.56

Bacterial artificial chromosome libraries for mouse sequencing and functional analysis. Genome Res (2000) 5.13

Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map. Nucleic Acids Res (1990) 4.07

An integrated map of the genome of the tubercle bacillus, Mycobacterium tuberculosis H37Rv, and comparison with Mycobacterium leprae. Proc Natl Acad Sci U S A (1996) 3.78

A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map. Genome Res (2000) 2.27

An efficient strategy for large-scale high-throughput transposon-mediated sequencing of cDNA clones. Nucleic Acids Res (2002) 2.27

'SPKK' motifs prefer to bind to DNA at A/T-rich sites. EMBO J (1989) 2.24

A set of BAC clones spanning the human genome. Nucleic Acids Res (2004) 2.00

Whole-genome validation of high-information-content fingerprinting. Plant Physiol (2005) 1.98

Towards a physical map of the Drosophila melanogaster genome: mapping of cosmid clones within defined genomic divisions. Nucleic Acids Res (1990) 1.87

A BAC- and BIBAC-based physical map of the soybean genome. Genome Res (2004) 1.73

From first base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. Genome Res (2001) 1.64

A BAC-based integrated linkage map of the silkworm Bombyx mori. Genome Biol (2008) 1.60

A physical map of the bovine genome. Genome Biol (2007) 1.56

Automated band mapping in electrophoretic gel images using background information. Nucleic Acids Res (2005) 1.49

Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis. Genetics (2001) 1.49

Genome mapping by fluorescent fingerprinting. Genome Res (1997) 1.46

Physical map and organization of chromosome 7 in the rice blast fungus, Magnaporthe grisea. Genome Res (1999) 1.36

Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project. Genome Res (2004) 1.36

A bacterial artificial chromosome-based framework contig map of human chromosome 22q. Proc Natl Acad Sci U S A (1996) 1.30

FPC Web tools for rice, maize, and distribution. Plant Physiol (2005) 1.28

Integrating sequence with FPC fingerprint maps. Nucleic Acids Res (2009) 1.20

Software for automated analysis of DNA fingerprinting gels. Genome Res (2003) 1.18

Canonical ordered cosmid library of the symbiotic plasmid of Rhizobium species NGR234. Proc Natl Acad Sci U S A (1991) 1.15

Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients. Genomics (2008) 1.14

A physical map of the X chromosome of Drosophila melanogaster: cosmid contigs and sequence tagged sites. Genetics (1995) 1.14

A 12-Mb complete coverage BAC contig map in human chromosome 16p13.1-p11.2. Genome Res (1999) 1.14

Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome. Genome Res (2004) 1.11

Physical map-assisted whole-genome shotgun sequence assemblies. Genome Res (2006) 1.10

An integrated map of Arabidopsis thaliana for functional analysis of its genome sequence. Genetics (2001) 1.10

Repetitive DNA sequences located in the terminal portion of the Caenorhabditis elegans chromosomes. Nucleic Acids Res (1993) 1.09

Genome physical mapping from large-insert clones by fingerprint analysis with capillary electrophoresis: a robust physical map of Penicillium chrysogenum. Nucleic Acids Res (2005) 1.01

The use of simulated annealing in chromosome reconstruction experiments based on binary scoring. Genetics (1992) 0.97

Sequence level analysis of recently duplicated regions in soybean [Glycine max (L.) Merr.] genome. DNA Res (2008) 0.96

LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes. BMC Bioinformatics (2010) 0.95

Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps. Genome Res (2003) 0.94

A physical map of the Leishmania major Friedlin genome. Genome Res (1998) 0.92

Identification of a large family of genes for putative chemoreceptor proteins in an ordered library of the Desulfovibrio vulgaris Hildenborough genome. J Bacteriol (1994) 0.91

A test case for physical mapping of human genome by repetitive sequence fingerprints: construction of a physical map of a 420 kb YAC subcloned into cosmids. Nucleic Acids Res (1991) 0.84

Catfish CC chemokines: genomic clustering, duplications, and expression after bacterial infection with Edwardsiella ictaluri. Mol Genet Genomics (2005) 0.83

Automated FingerPrint Background removal: FPB. BMC Bioinformatics (2009) 0.82

Algebraic correction methods for computational assessment of clone overlaps in DNA fingerprint mapping. BMC Bioinformatics (2007) 0.78

Use of repetitive DNA probes as physical mapping strategy in Caenorhabditis elegans. Nucleic Acids Res (1990) 0.78

A compartmentalized approach to the assembly of physical maps. BMC Bioinformatics (2009) 0.77

Whole Genome Mapping with Feature Sets from High-Throughput Sequencing Data. PLoS One (2016) 0.75

Archives of and for science: Archives for molecular biology preserve the heritage of science beyond the published record for future scholars. EMBO Rep (2017) 0.75

Articles by these authors

Initial sequencing and analysis of the human genome. Nature (2001) 212.86

Sequence and organization of the human mitochondrial genome. Nature (1981) 57.39

Artemis: sequence visualization and annotation. Bioinformatics (2000) 46.68

Sequence data handling by computer. Nucleic Acids Res (1977) 45.33

The Pfam protein families database. Nucleic Acids Res (2000) 42.28

The Ensembl genome database project. Nucleic Acids Res (2002) 40.87

A new computer method for the storage and manipulation of DNA gel reading data. Nucleic Acids Res (1980) 36.42

Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins (1997) 26.91

Ensembl 2009. Nucleic Acids Res (2008) 25.38

The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res (2001) 24.45

Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Res (1984) 21.53

Ensembl 2008. Nucleic Acids Res (2007) 20.67

Ensembl 2007. Nucleic Acids Res (2006) 20.10

A strategy of DNA sequencing employing computer programs. Nucleic Acids Res (1979) 19.82

Further procedures for sequence analysis by computer. Nucleic Acids Res (1978) 18.94

WormBase: network access to the genome and biology of Caenorhabditis elegans. Nucleic Acids Res (2001) 18.52

A computer program to search for tRNA genes. Nucleic Acids Res (1980) 17.12

Analysis of the protein-coding content of the sequence of human cytomegalovirus strain AD169. Curr Top Microbiol Immunol (1990) 16.31

Maximum discrimination hidden Markov models of sequence consensus. J Comput Biol (1995) 15.75

Ensembl 2005. Nucleic Acids Res (2005) 15.13

Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing. Nucleic Acids Res (1982) 14.73

RNA sequence analysis using covariance models. Nucleic Acids Res (1994) 14.60

An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences. Nucleic Acids Res (1982) 12.58

Ensembl 2002: accommodating comparative genomics. Nucleic Acids Res (2003) 12.26

A new DNA sequence assembly program. Nucleic Acids Res (1995) 12.03

A workbench for large-scale sequence homology analysis. Comput Appl Biosci (1994) 12.00

Ensembl 2004. Nucleic Acids Res (2004) 11.88

Ensembl 2006. Nucleic Acids Res (2006) 11.66

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res (1999) 11.64

Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison. Proc Int Conf Intell Syst Mol Biol (1997) 11.52

ACeDB and macace. Methods Cell Biol (1995) 10.64

Nucleotide sequence of bacteriophage G4 DNA. Nature (1978) 10.46

Codon preference and its use in identifying protein coding regions in long DNA sequences. Nucleic Acids Res (1982) 9.99

Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III. Nature (2000) 9.82

Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans. Nature (2005) 9.50

Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res (1998) 8.87

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene (1995) 8.45

Using GeneWise in the Drosophila annotation experiment. Genome Res (2000) 7.50

The DNA sequence and comparative analysis of human chromosome 20. Nature (2002) 7.40

InterPro--an integrated documentation resource for protein families, domains and functional sites. Bioinformatics (2000) 6.42

Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes. Nucleic Acids Res (1984) 6.38

Graphic methods to determine the function of nucleic acid sequences. Nucleic Acids Res (1984) 6.08

A functional genomic analysis of cell morphology using RNA interference. J Biol (2003) 5.99

The C. elegans genome sequencing project: a beginning. Nature (1992) 5.36

A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res (1991) 5.03

The DNA sequence and analysis of human chromosome 6. Nature (2003) 4.75

A survey of expressed genes in Caenorhabditis elegans. Nat Genet (1992) 4.63

The current status and portability of our sequence handling software. Nucleic Acids Res (1986) 4.54

Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res (1999) 4.50

Different pattern of codon recognition by mammalian mitochondrial tRNAs. Proc Natl Acad Sci U S A (1980) 3.74

Meiotic recombination, noncoding DNA and genomic organization in Caenorhabditis elegans. Genetics (1995) 3.45

Nucleotide sequence homology at 12 intron--exon junctions in the chick ovalbumin gene. Nature (1978) 3.30

Dynamic programming alignment accuracy. J Comput Biol (1998) 3.22

A computer program to enter DNA gel reading data into a computer. Nucleic Acids Res (1984) 3.21

Computer support for interpreting family histories of breast and ovarian cancer in primary care: comparative study with simulated cases. BMJ (2000) 3.12

Computer support for recording and interpreting family histories of breast and ovarian cancer in primary care (RAGs): qualitative evaluation with simulated patients. BMJ (1999) 2.80

Complete nucleotide sequence of the chicken chromosomal ovalbumin gene and its biological significance. Biochemistry (1981) 2.67

Association of the Sindbis virus RNA methyltransferase activity with the nonstructural protein nsP1. Virology (1989) 2.64

Is there a single pathway for the folding of a polypeptide chain? Proc Natl Acad Sci U S A (1985) 2.62

A method for measuring the non-random bias of a codon usage table. Nucleic Acids Res (1984) 2.57

Image analysis of restriction enzyme fingerprint autoradiograms. Comput Appl Biosci (1989) 2.55

Experiment files and their application during large-scale sequencing projects. DNA Seq (1996) 2.48

The DNA sequence and biological annotation of human chromosome 1. Nature (2006) 2.42

A standard file format for data from DNA sequencing instruments. DNA Seq (1992) 2.42

Searching for patterns in protein and nucleic acid sequences. Methods Enzymol (1990) 2.39

The product of fem-1, a nematode sex-determining gene, contains a motif found in cell cycle control proteins and receptors for cell-cell interactions. Cell (1990) 2.33

mec-7 is a beta-tubulin gene required for the production of 15-protofilament microtubules in Caenorhabditis elegans. Genes Dev (1989) 2.33

A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Res (2001) 2.21

Deviations from expected frequencies of CpG dinucleotides in herpesvirus DNAs may be diagnostic of differences in the states of their latent genomes. J Gen Virol (1989) 2.13

Caenorhabditis elegans has scores of homoeobox-containing genes. Nature (1989) 2.13

Beta-lactamases: molecular studies. Biotechnol Genet Eng Rev (1985) 2.03

Monoclonal antibodies to three epitopic regions of feline leukemia virus p27 and their use in enzyme-linked immunosorbent assay of p27. J Immunol Methods (1983) 1.94

Molecular genetics of the Caenorhabditis elegans heterochronic gene lin-14. Genetics (1989) 1.81

The application of numerical estimates of base calling accuracy to DNA sequencing projects. Nucleic Acids Res (1995) 1.79

Both DNA strands of antibody genes are hypermutation targets. Proc Natl Acad Sci U S A (1998) 1.77

Sequence of three introns in the chick ovalbumin gene. Nature (1979) 1.69

Automated detection of point mutations using fluorescent sequence trace subtraction. Nucleic Acids Res (1998) 1.67

Finding protein coding regions in genomic sequences. Methods Enzymol (1990) 1.61

Randomised controlled trial of prophylactic antibiotics before insertion of intrauterine devices. IUD Study Group. Lancet (1998) 1.60

The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Nature (1997) 1.56

Comparative sequence analysis of the human and pufferfish Huntington's disease genes. Nat Genet (1995) 1.55

Polar zippers. Curr Biol (1993) 1.48

Correlation of the physical and genetic maps in the lin-12 region of Caenorhabditis elegans. Nucleic Acids Res (1987) 1.40

"Pap" testing and hysterectomy prevalence: a survey of communities with high and low cervical cancer rates. Am J Epidemiol (1977) 1.38

Veterinary nursing examinations. Vet Rec (1994) 1.38

Respiratory status of Los Angeles firemen. One-month follow-up after inhalation of dense smoke. Chest (1977) 1.35

The DNA sequence and analysis of human chromosome 13. Nature (2004) 1.33

Structural basis for the inactivation of the P54 mutant of beta-lactamase from Staphylococcus aureus PC1. Biochemistry (1991) 1.33

Posterior pattern formation in C. elegans involves position-specific expression of a gene containing a homeobox. Cell (1988) 1.32

Analysis of protein domain families in Caenorhabditis elegans. Genomics (1997) 1.30

Aspirin intolerance in chronic childhood asthma: Detected by oral challenge. Pediatrics (1975) 1.29