Published in J Mol Biol on April 05, 1988
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Transmembrane helix predictions revisited. Protein Sci (2002) 2.28
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Compositional determinants of prion formation in yeast. Mol Cell Biol (2010) 1.63
Structure of the C-terminal end of the nascent peptide influences translation termination. EMBO J (1996) 1.60
Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinformatics (2014) 1.50
Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins. Proc Natl Acad Sci U S A (2009) 1.30
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A preference-based free-energy parameterization of enzyme-inhibitor binding. Applications to HIV-1-protease inhibitor design. Protein Sci (1995) 1.21
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Modeling amyloid beta-peptide insertion into lipid bilayers. Biophys J (2004) 1.08
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A Monte Carlo study of peptide insertion into lipid bilayers: equilibrium conformations and insertion mechanisms. Biophys J (2002) 1.02
Conformational partitioning of the fusion peptide of HIV-1 gp41 and its structural analogs in bilayer membranes. Biophys J (2002) 1.01
Describing sequence-ensemble relationships for intrinsically disordered proteins. Biochem J (2013) 1.00
Determining the basis of channel-tetramerization specificity by x-ray crystallography and a sequence-comparison algorithm: Family Values (FamVal). Proc Natl Acad Sci U S A (2003) 0.99
Insertion and hairpin formation of membrane proteins: a Monte Carlo study. Biophys J (1996) 0.99
Role of hydrophobic amino acid clusters in the transactivation activity of the human glucocorticoid receptor. Mol Cell Biol (1997) 0.97
A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank. BMC Evol Biol (2006) 0.97
Constraint-based assembly of tertiary protein structures from secondary structure elements. Protein Sci (2000) 0.96
Effect of charged residue substitutions on the thermodynamics of signal peptide-lipid interactions for the Escherichia coli LamB signal sequence. Biophys J (1994) 0.95
A Monte Carlo model of fd and Pf1 coat proteins in lipid membranes. Biophys J (1995) 0.94
Relation between the convergence temperatures Th* and Ts* in protein unfolding. Proc Natl Acad Sci U S A (1992) 0.92
Versatility of trigger factor interactions with ribosome-nascent chain complexes. J Biol Chem (2010) 0.91
An assessment of the impacts of molecular oxygen on the evolution of proteomes. Mol Biol Evol (2008) 0.90
Absolute hydration free energies of blocked amino acids: implications for protein solvation and stability. Biophys J (2013) 0.90
Long membrane helices and short loops predicted less accurately. Protein Sci (2002) 0.88
Probing the disordered domain of the nuclear pore complex through coarse-grained molecular dynamics simulations. Biophys J (2014) 0.87
Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers. Eur Biophys J (2007) 0.85
Cotranslational protein folding within the ribosome tunnel influences trigger-factor recruitment. Biophys J (2012) 0.85
Very empirical treatment of solvation and entropy: a force field derived from log Po/w. J Comput Aided Mol Des (2001) 0.85
Structural characterization of minor ampullate spidroin domains and their distinct roles in fibroin solubility and fiber formation. PLoS One (2013) 0.84
AlignHUSH: alignment of HMMs using structure and hydrophobicity information. BMC Bioinformatics (2011) 0.83
Mutation in mitochondrial complex I ND6 subunit is associated with defective response to hypoxia in human glioma cells. Mol Cancer (2004) 0.83
Investigation of an anomalously accelerating substitution in the folding of a prototypical two-state protein. J Mol Biol (2010) 0.82
Effects of serine-to-cysteine mutations on beta-lactamase folding. Biophys J (2007) 0.81
Monte Carlo simulations of tBid association with the mitochondrial outer membrane. Eur Biophys J (2007) 0.81
Does the genetic code have a eukaryotic origin? Genomics Proteomics Bioinformatics (2013) 0.80
Thermal Unthreading of the Lasso Peptides Astexin-2 and Astexin-3. ACS Chem Biol (2016) 0.79
Solvation free energy of the peptide group: its model dependence and implications for the additive-transfer free-energy model of protein stability. Biophys J (2013) 0.79
Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins. BMC Bioinformatics (2011) 0.78
eMatchSite: sequence order-independent structure alignments of ligand binding pockets in protein models. PLoS Comput Biol (2014) 0.77
A single active-site mutation of P450BM-3 dramatically enhances substrate binding and rate of product formation. Biochemistry (2011) 0.77
Conditional solvation thermodynamics of isoleucine in model peptides and the limitations of the group-transfer model. J Phys Chem B (2014) 0.76
Quantitative characterization of local protein solvation to predict solvent effects on protein structure. Biophys J (2012) 0.76
Computational analysis of C-reactive protein for assessment of molecular dynamics and interaction properties. Cell Biochem Biophys (2013) 0.76
Fuzzy cluster analysis of simple physicochemical properties of amino acids for recognizing secondary structure in proteins. Protein Sci (1995) 0.75
Forced Unfolding Mechanism of Bacteriorhodopsin as Revealed by Coarse-Grained Molecular Dynamics. Biophys J (2016) 0.75
Deciphering the folding kinetics of transmembrane helical proteins. Proc Natl Acad Sci U S A (2000) 0.75
On the Physicochemical and Structural Modifications Associated with HIV-1 Subtype B Tropism Transition. AIDS Res Hum Retroviruses (2016) 0.75
An efficient protocol for obtaining accurate hydration free energies using quantum chemistry and reweighting from molecular dynamics simulations. Bioorg Med Chem (2016) 0.75
50 years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification. Biol Res (2016) 0.75
Hydrophobicity of the peptide C=O...H-N hydrogen-bonded group. J Mol Biol (1988) 1.16