Published in Comput Appl Biosci on June 01, 1995
A standard numbering scheme for the class A beta-lactamases. Biochem J (1991) 17.44
The significance of protein sequence similarities. Comput Appl Biosci (1988) 11.26
XMIPP: a new generation of an open-source image processing package for electron microscopy. J Struct Biol (2004) 4.95
A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics (2001) 3.56
Nonsmooth nonnegative matrix factorization (nsNMF). IEEE Trans Pattern Anal Mach Intell (2006) 2.51
Evolutionary pattern of human respiratory syncytial virus (subgroup A): cocirculating lineages and correlation of genetic and antigenic changes in the G glycoprotein. J Virol (1994) 2.29
A clustering approach to multireference alignment of single-particle projections in electron microscopy. J Struct Biol (2010) 2.19
Sequence-related protein export NTPases encoded by the conjugative transfer region of RP4 and by the cag pathogenicity island of Helicobacter pylori share similar hexameric ring structures. Proc Natl Acad Sci U S A (2000) 1.98
Classification of images of biomolecular assemblies: a study of ribosomes and ribosomal subunits of Escherichia coli. J Microsc (1988) 1.88
Genetic evolution and tropism of transmissible gastroenteritis coronaviruses. Virology (1992) 1.88
3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs). Ultramicroscopy (1998) 1.78
Reassortment of DNA recognition domains and the evolution of new specificities. Mol Microbiol (1987) 1.76
Evolution of the capsid protein genes of foot-and-mouth disease virus: antigenic variation without accumulation of amino acid substitutions over six decades. J Virol (1992) 1.72
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree. J Mol Evol (1997) 1.71
Integrating electron microscopy information into existing Distributed Annotation Systems. J Struct Biol (2007) 1.69
General morphology and capsid fine structure of African swine fever virus particles. Virology (1984) 1.52
Specificity and kinetics of triose phosphate isomerase from chicken muscle. Biochem J (1972) 1.51
Purification and organization of the gene 1 portal protein required for phage P22 DNA packaging. Biochemistry (1988) 1.50
Antigenic structure of the human respiratory syncytial virus G glycoprotein and relevance of hypermutation events for the generation of antigenic variants. J Gen Virol (1997) 1.49
Xmipp 3.0: an improved software suite for image processing in electron microscopy. J Struct Biol (2013) 1.47
A semi-synthetic penicillinase inactivator. Nature (1979) 1.46
Large T-antigen double hexamers imaged at the simian virus 40 origin of replication. Mol Cell Biol (2000) 1.42
A structural model for the Escherichia coli DnaB helicase based on electron microscopy data. J Struct Biol (1995) 1.39
Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA. Proc Natl Acad Sci U S A (1991) 1.38
Gene expression data preprocessing. Bioinformatics (2003) 1.37
A novel neural network technique for analysis and classification of EM single-particle images. J Struct Biol (2001) 1.37
Active site of staphylococcal beta-lactamase. Philos Trans R Soc Lond B Biol Sci (1980) 1.36
Active-site labelling of triose phosphate isomerase. The reaction of bromohydroxyacetone phosphate with a unique glutamic acid residue and the migration of the label to tyrosine. Biochem J (1972) 1.35
Bacteriophage T3 connector: three-dimensional structure and comparison with other viral head-tail connecting regions. J Mol Biol (1988) 1.34
Sequence homologies between hsp60 and autoantigens. Immunol Today (1993) 1.32
Pattern recognition and classification of images of biological macromolecules using artificial neural networks. Biophys J (1994) 1.31
Three-dimensional reconstruction of the connector of bacteriophage phi 29 at 1.8 nm resolution. J Mol Biol (1986) 1.31
The CD36, CLA-1 (CD36L1), and LIMPII (CD36L2) gene family: cellular distribution, chromosomal location, and genetic evolution. Genomics (1995) 1.28
Significance of protein sequence similarities. Methods Enzymol (1990) 1.26
Six molecules of SV40 large T antigen assemble in a propeller-shaped particle around a channel. J Mol Biol (1997) 1.24
A multiresolution approach to orientation assignment in 3D electron microscopy of single particles. J Struct Biol (2004) 1.21
The SbcCD protein of Escherichia coli is related to two putative nucleases in the UvrA superfamily of nucleotide-binding proteins. Genetica (1992) 1.20
Uniquely labelled active site sequence in chicken muscle triose phosphate isomerase. Nature (1970) 1.19
Marker-free image registration of electron tomography tilt-series. BMC Bioinformatics (2009) 1.18
Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes. Pharmacogenomics J (2010) 1.16
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. Structure (1998) 1.15
The RepA protein of plasmid RSF1010 is a replicative DNA helicase. J Biol Chem (1997) 1.15
Computer graphic display method for visualizing three-dimensional biological structures. Science (1986) 1.14
The effect of overabundant projection directions on 3D reconstruction algorithms. J Struct Biol (2001) 1.14
Molecular profiling related to poor prognosis in thyroid carcinoma. Combining gene expression data and biological information. Oncogene (2007) 1.13
Three-dimensional structure of T3 connector purified from overexpressing bacteria. J Mol Biol (1992) 1.12
The three-dimensional structure of a DNA translocating machine at 10 A resolution. Structure (1999) 1.11
Segments of bacteriophage lambda (orf 221) and phi 80 are homologous to genes coding for mammalian protein phosphatases. Gene (1988) 1.11
A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment. Ultramicroscopy (2003) 1.09
Estimation of the intrinsic rate of natural increase and its error by both algebraic and resampling approaches. Comput Appl Biosci (1993) 1.07
Differential gene-expression analysis defines a molecular pattern related to olive pollen allergy. J Biol Regul Homeost Agents (2013) 1.07
The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel. EMBO J (2001) 1.07
Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function. J Struct Biol (2007) 1.04
The prognostic relevance of the nonstructural 5A gene interferon sensitivity determining region is different in infections with genotype 1b and 3a isolates of hepatitis C virus. J Infect Dis (1998) 1.03
Point mutant frequencies in the pol gene of human immunodeficiency virus type 1 are two- to threefold lower than those of env. AIDS Res Hum Retroviruses (1996) 1.03
Mapping and fuzzy classification of macromolecular images using self-organizing neural networks. Ultramicroscopy (2000) 1.02
Normalizing projection images: a study of image normalizing procedures for single particle three-dimensional electron microscopy. Ultramicroscopy (2004) 1.02
Three-dimensional reconstruction of the ribosome from Escherichia coli. Biophys J (1989) 1.01
Expression profiles and biological function. Genome Inform Ser Workshop Genome Inform (2000) 1.00
Evolutionary analysis of the picornavirus family. J Mol Evol (1995) 1.00
Oxidation of cytochrome c peroxidase with hydrogen peroxide: identification of the "endogenous donor". Biochem Biophys Res Commun (1972) 0.99
Contribution of mutation and RNA recombination to the evolution of a plant pathogenic RNA. J Mol Evol (1997) 0.99
The crystal structure of beta-lactamase from Staphylococcus aureus at 0.5 nm resolution. Biochem J (1985) 0.99
Phylogenetic analysis of the thiolase family. Implications for the evolutionary origin of peroxisomes. J Mol Evol (1992) 0.99
Bacterial morphine dehydrogenase further defines a distinct superfamily of oxidoreductases with diverse functional activities. Biochem J (1994) 0.98
Three-dimensional reconstruction of bacteriophage phi 29 neck particles at 2 X 2 nm resolution. J Mol Biol (1985) 0.98
Automatic particle selection from electron micrographs using machine learning techniques. J Struct Biol (2009) 0.96
A framework for querying a database for structural information on 3D images of macromolecules: A web-based query-by-content prototype on the BioImage macromolecular server. J Struct Biol (1999) 0.96
Immunogenicity of non-structural proteins of foot-and-mouth disease virus: differences between infected and vaccinated swine. Arch Virol (1994) 0.95
Phylogenetic relationships of european strains of porcine reproductive and respiratory syndrome virus (PRRSV) inferred from DNA sequences of putative ORF-5 and ORF-7 genes. Virus Res (1996) 0.95
Comparison of vaccine strains and the virus causing the 1986 foot-and-mouth disease outbreak in Spain: epizootiological analysis. Virus Res (1990) 0.95
Primer design for specific diagnosis by PCR of highly variable RNA viruses: typing of foot-and-mouth disease virus. Virology (1992) 0.95
Three-dimensional reconstruction of the sevenfolded form of Bacillus subtilis Gro EL Chaperonin. J Struct Biol (1991) 0.94
Bacteriophage T3 gene 8 product oligomer structure. J Ultrastruct Mol Struct Res (1986) 0.93
Fuzzy sets-based classification of electron microscopy images of biological macromolecules with an application to ribosomal particles. J Microsc (1990) 0.91
Transfer function restoration in 3D electron microscopy via iterative data refinement. Phys Med Biol (2004) 0.91
Polymorphic quaternary organization of the Bacillus subtilis bacteriophage SPP1 replicative helicase (G40 P). J Mol Biol (1998) 0.91
Structural localization of the proteins of the head to tail connecting region of bacteriophage phi 29. Virology (1983) 0.91
Sequences of isopenicillin N synthetase genes suggest horizontal gene transfer from prokaryotes to eukaryotes. Proc Biol Sci (1990) 0.90
Studies on cytochrome c peroxidase. XVII. Stoichiometry and mechanism of the reaction of compound ES with donors. J Biol Chem (1971) 0.90
Designing and executing scientific workflows with a programmable integrator. Bioinformatics (2004) 0.89
A method for determining the position and size of optimal sequence regions for phylogenetic analysis. J Mol Evol (1995) 0.89
A RT-PCR assay for the differential diagnosis of vesicular viral diseases of swine. J Virol Methods (1998) 0.89
Two-step demodulation based on the Gram-Schmidt orthonormalization method. Opt Lett (2012) 0.89
Structure of phage phi 29 connector protein assembled in vivo. Virology (1985) 0.88
FASTDEF: fast defocus and astigmatism estimation for high-throughput transmission electron microscopy. J Struct Biol (2012) 0.88
Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs. J Struct Biol (2008) 0.87
A new non-crystallographic image-processing technique reveals the architecture of ribosomes. Trends Biochem Sci (1988) 0.87
Molecular characterization of human immunodeficiency virus type 1 isolates from Venezuela. AIDS Res Hum Retroviruses (1995) 0.87
Fixation of mutations at the VP1 gene of foot-and-mouth disease virus. Can quasispecies define a transient molecular clock? Gene (1991) 0.86
Restoration of direct Fourier three-dimensional reconstructions of crystalline specimens by the method of convex projections. J Microsc (1987) 0.86
Comparative study of the genetic variability in thymidine kinase and glycoprotein B genes of herpes simplex viruses by the RNase A mismatch cleavage method. Virus Res (1995) 0.86
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs. Bioinformatics (2013) 0.85
Helicases as nucleic acid unwinding machines. Nat Struct Biol (2000) 0.85
Non-rigid consistent registration of 2D image sequences. Phys Med Biol (2010) 0.84
Evolution and tropism of transmissible gastroenteritis coronavirus. Adv Exp Med Biol (1993) 0.83
pH-controlled quaternary states of hexameric DnaB helicase. J Mol Biol (2000) 0.83
Molecular epidemiology of foot-and-mouth disease virus type O. J Gen Virol (1993) 0.83
Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques. J Struct Biol (2013) 0.83