Optical mapping of lambda bacteriophage clones using restriction endonucleases.

PubWeight™: 1.80‹?› | Rank: Top 3%

🔗 View Article (PMID 7795651)

Published in Nat Genet on April 01, 1995

Authors

X Meng1, K Benson, K Chada, E J Huff, D C Schwartz

Author Affiliations

1: New York University, Department of Chemistry, New York 10003, USA.

Articles citing this

Automated high resolution optical mapping using arrayed, fluid-fixed DNA molecules. Proc Natl Acad Sci U S A (1998) 2.50

Validation of rice genome sequence by optical mapping. BMC Genomics (2007) 2.44

High-resolution restriction maps of bacterial artificial chromosomes constructed by optical mapping. Proc Natl Acad Sci U S A (1998) 2.10

Whole-genome shotgun optical mapping of Rhodospirillum rubrum. Appl Environ Microbiol (2005) 1.83

Single-molecule approach to bacterial genomic comparisons via optical mapping. J Bacteriol (2004) 1.76

A whole-genome shotgun optical map of Yersinia pestis strain KIM. Appl Environ Microbiol (2002) 1.68

pH-dependent specific binding and combing of DNA. Biophys J (1997) 1.60

Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly. Genome Res (2003) 1.57

How is the Human Genome Project doing, and what have we learned so far? Proc Natl Acad Sci U S A (1995) 1.50

Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching. Chem Rev (2012) 1.42

Single virus genomics: a new tool for virus discovery. PLoS One (2011) 1.41

Observation by fluorescence microscopy of transcription on single combed DNA. Proc Natl Acad Sci U S A (2002) 1.30

A new method for straightening DNA molecules for optical restriction mapping. Nucleic Acids Res (1997) 1.26

Lighting up individual DNA binding proteins with quantum dots. Nano Lett (2009) 1.08

Scanning force microscopy of DNA molecules elongated by convective fluid flow in an evaporating droplet. Biophys J (1998) 1.05

Single molecule transcription profiling with AFM. Nanotechnology (2007) 0.99

Enzymatically incorporated genomic tags for optical mapping of DNA-binding proteins. Angew Chem Int Ed Engl (2012) 0.95

Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission. Stand Genomic Sci (2010) 0.92

Transchip: single-molecule detection of transcriptional elongation complexes. Anal Biochem (2006) 0.91

Fluorescent marker for direct detection of specific dsDNA sequences. Anal Chem (2009) 0.90

Combining atomic force and fluorescence microscopy for analysis of quantum-dot labeled protein-DNA complexes. J Mol Recognit (2009) 0.90

Imaging and analysis of transcription on large, surface-mounted single template DNA molecules. Anal Biochem (2008) 0.88

Exploring both sequence detection and restriction endonuclease cleavage kinetics by recognition site via single-molecule microfluidic trapping. Lab Chip (2010) 0.81

Toward single-molecule optical mapping of the epigenome. ACS Nano (2013) 0.81

A fast and scalable kymograph alignment algorithm for nanochannel-based optical DNA mappings. PLoS One (2015) 0.80

Combing of genomic DNA from droplets containing picograms of material. ACS Nano (2015) 0.79

Bacteriophage strain typing by rapid single molecule analysis. Nucleic Acids Res (2015) 0.78

Rapid construction of genome map for large yellow croaker (Larimichthys crocea) by the whole-genome mapping in BioNano Genomics Irys system. BMC Genomics (2015) 0.77

Image processing for optical mapping. Gigascience (2015) 0.75

Sizing of single fluorescently stained DNA fragments by scanning microscopy. Nucleic Acids Res (2003) 0.75

Articles by these authors

Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis. Cell (1984) 31.52

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature (2001) 23.49

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc Natl Acad Sci U S A (2002) 13.83

New techniques for purifying large DNAs and studying their properties and packaging. Cold Spring Harb Symp Quant Biol (1983) 6.35

Mutation responsible for the mouse pygmy phenotype in the developmentally regulated factor HMGI-C. Nature (1995) 5.48

Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infect Immun (2003) 5.11

Arbitrarily primed PCR fingerprinting of RNA. Nucleic Acids Res (1992) 4.78

Antigenic variation in Trypanosoma brucei analyzed by electrophoretic separation of chromosome-sized DNA molecules. Cell (1984) 4.03

In vivo modulation of Hmgic reduces obesity. Nat Genet (2000) 4.02

Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. Science (1998) 3.83

Developmental regulation of a cloned adult beta-globin gene in transgenic mice. Nature (1985) 3.63

Whole-genome shotgun optical mapping of Deinococcus radiodurans. Science (1999) 3.56

Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping. Science (1993) 3.54

An embryonic pattern of expression of a human fetal globin gene in transgenic mice. Nature (1986) 3.07

Specific expression of a foreign beta-globin gene in erythroid cells of transgenic mice. Nature (1985) 2.79

Collagenase expression in the lungs of transgenic mice causes pulmonary emphysema. Cell (1992) 2.75

Predictors of successful pulmonary balloon valvuloplasty: 10-year experience. Cathet Cardiovasc Diagn (1996) 2.62

Automated high resolution optical mapping using arrayed, fluid-fixed DNA molecules. Proc Natl Acad Sci U S A (1998) 2.50

Shotgun optical maps of the whole Escherichia coli O157:H7 genome. Genome Res (2001) 2.43

Hypotensive reactions: a previously uncharacterized complication of platelet transfusion? Transfusion (1996) 2.37

Disruption of the architectural factor HMGI-C: DNA-binding AT hook motifs fused in lipomas to distinct transcriptional regulatory domains. Cell (1995) 2.15

High-resolution restriction maps of bacterial artificial chromosomes constructed by optical mapping. Proc Natl Acad Sci U S A (1998) 2.10

Cost-effectiveness of white cell-reduction filters in treatment of adult acute myelogenous leukemia. Transfusion (1993) 2.04

A shotgun optical map of the entire Plasmodium falciparum genome. Nat Genet (1999) 2.04

Genomics via optical mapping. II: Ordered restriction maps. J Comput Biol (1997) 1.93

Measurement of right and left ventricular systolic time intervals by echocardiography. Circulation (1975) 1.79

The echocardiographic assessment of pulmonary artery pressure and pulmonary vascular resistance. Circulation (1975) 1.68

Optical mapping and its potential for large-scale sequencing projects. Trends Biotechnol (1999) 1.56

Optical mapping: a novel, single-molecule approach to genomic analysis. Genome Res (1995) 1.44

Ordered restriction endonuclease maps of yeast artificial chromosomes created by optical mapping on surfaces. Proc Natl Acad Sci U S A (1995) 1.42

A rapidly rearranging retrotransposon within the miniexon gene locus of Crithidia fasciculata. Mol Cell Biol (1990) 1.41

A genetic linkage map of mouse chromosome 10: localization of eighteen molecular markers using a single interspecific backcross. Genetics (1990) 1.39

Sensitivity, specificity and predictive value of two-dimensional echocardiography in detecting coronary artery aneurysms in patients with Kawasaki disease. J Am Coll Cardiol (1986) 1.38

Developmental regulation of human globin genes in transgenic mice. Cold Spring Harb Symp Quant Biol (1985) 1.35

A mesoscale model of DNA and its renaturation. Biophys J (2009) 1.29

Optical mapping: an approach for fine mapping. Methods Enzymol (1999) 1.29

Collagenase expression in transgenic mouse skin causes hyperkeratosis and acanthosis and increases susceptibility to tumorigenesis. Mol Cell Biol (1995) 1.25

The gene for the helix-loop-helix protein, Id, is specifically expressed in neural precursors. Dev Biol (1992) 1.21

Correlates of coronary artery aneurysm formation in patients with Kawasaki disease. Am J Dis Child (1987) 1.18

Optical mapping of Plasmodium falciparum chromosome 2. Genome Res (1999) 1.16

Evaluation of changes in hemoglobin levels associated with ABO-incompatible plasma in apheresis platelets. Transfusion (1998) 1.15

Mini-mouse: phenotypic characterization of a transgenic insertional mutant allelic to pygmy. Genet Res (1994) 1.15

Correction of murine beta-thalassemia by gene transfer into the germ line. Science (1986) 1.13

Mini-mouse: disruption of the pygmy locus in a transgenic insertional mutant. Science (1990) 1.13

Developing a measure of patient perceptions of short-term outcomes of third molar surgery. J Oral Maxillofac Surg (1996) 1.13

Retrieval of a catheter foreign body from the right heart using a guide wire deflector system. Radiology (1971) 1.12

Tissue, temporal and inducible expression pattern of haptoglobin in mice. Gene (1997) 1.11

Sizing single DNA molecules. Nature (1992) 1.10

Plasma norepinephrine levels in infants and children with congestive heart failure. Am J Cardiol (1987) 1.08

An actigraphic comparison of sleep restriction and sleep hygiene treatments for insomnia in older adults. J Geriatr Psychiatry Neurol (2000) 1.07

Cardiovascular anomalies associated with tetralogy of Fallot. Am J Cardiol (1967) 1.05

Scanning force microscopy of DNA molecules elongated by convective fluid flow in an evaporating droplet. Biophys J (1998) 1.05

Color flow mapping in the diagnosis of coronary artery fistula in the neonate: benefits and limitations. Am Heart J (1989) 1.01

Ventricular septum in right ventricular volume overload: an echocardiographic study. Am J Cardiol (1972) 1.00

HMGI family proteins: architectural transcription factors in mammalian development and cancer. Keio J Med (1998) 1.00

Genomic structure and expression of the murine Hmgi-c gene. Nucleic Acids Res (1996) 1.00

The large window ductus: a surgical trap. Ann Thorac Surg (1998) 0.99

Coronary artery caliber in normal children and patients with Kawasaki disease but without aneurysms: an echocardiographic and angiographic study. J Am Coll Cardiol (1986) 0.99

Inhibition of restriction endonuclease activity by DNA binding fluorochromes. J Biomol Struct Dyn (1996) 0.99

Systemic hypertension secondary to peripheral vascular anomalies in patients with Williams syndrome. J Pediatr (1985) 0.98

When is echocardiography unreliable in patients undergoing catheterization for pediatric cardiovascular disease? J Am Soc Echocardiogr (1991) 0.97

Balloon atrial septostomy for left ventricular decompression in patients receiving extracorporeal membrane oxygenation for myocardial failure. J Pediatr (1993) 0.96

Focal lipid cardiomyopathy in an infant with paroxysmal atrial tachycardia. Arch Pathol (1973) 0.95

Clinical spectrum and long-term follow-up of isolated mitral valve prolapse in 119 children. Circulation (1980) 0.95

Subacute thyroiditis following the H1N1 vaccine. J Endocrinol Invest (2010) 0.94

Germ-cell deficient (gcd), an insertional mutation manifested as infertility in transgenic mice. Proc Natl Acad Sci U S A (1991) 0.94

Germ cell deficient (gcd) mouse as a model of premature ovarian failure. Biol Reprod (1993) 0.94

CA 15-3 and carcinoembryonic antigen in the clinical evaluation of breast cancer. Clin Chim Acta (1991) 0.94

Response to exercise in patients after total surgical correction of Tetralogy of Fallot. Circulation (1976) 0.93

Genomic characterization of human HMGIC, a member of the accessory transcription factor family found at translocation breakpoints in lipomas. Genomics (1996) 0.93

Aortico-left ventricular tunnel. A new concept. Am J Cardiol (1967) 0.93

Coronary aneurysms in a patient with atypical Kawasaki syndrome and a streptococcal infection. Pediatr Cardiol (1985) 0.92

Prophylactic versus therapeutic platelet transfusion practices in hematology and/or oncology patients. Transfusion (1995) 0.92

The fate of reconstruction of the right ventricular outflow tract. J Thorac Cardiovasc Surg (1973) 0.91

Treatment of hepatocellular carcinoma in a rat model using electrochemotherapy. Eur J Cancer (2001) 0.90

DNA Molecules in Microfluidic Oscillatory Flow. Macromolecules (2005) 0.89

Results of palliative procedures for tetralogy of Fallot in infants and young children. Ann Thorac Surg (1968) 0.89

Uncovering pathways in DNA oligonucleotide hybridization via transition state analysis. Proc Natl Acad Sci U S A (2009) 0.89

Dynamics of DNA molecules in gel studied by fluorescence microscopy. Biochem Biophys Res Commun (1999) 0.89

Postoperative evaluation of the Fontan procedure by radionuclide angiography. Am Heart J (1982) 0.89

Translocation breakpoints upstream of the HMGIC gene in uterine leiomyomata suggest dysregulation of this gene by a mechanism different from that in lipomas. Genes Chromosomes Cancer (1996) 0.89

Monitoring therapy by serum HER-2/neu. Int J Biol Markers (2001) 0.87

Development of a community nurse-led continence service. Br J Nurs (1999) 0.87

A monoclonal antibody which detects a 125 kd glycoprotein on embryonal carcinoma cells and is mitogenic for murine spleen cells. J Reprod Immunol (1984) 0.87

Optical PCR: genomic analysis by long-range PCR and optical mapping. Mamm Genome (1999) 0.87

Cor triatriatum: diagnosis by MR imaging. AJR Am J Roentgenol (1987) 0.87

Optical mapping of BAC clones from the human Y chromosome DAZ locus. Genome Res (2000) 0.87

Expression of normal, mutant and hybrid human globin genes in transgenic mice. Prog Clin Biol Res (1987) 0.86

The beneficaial effect of sleep in an extended Jenkins and Dallenbach paradigm. Psychophysiology (1977) 0.86

Evaluation of CA M26, CA M29, CA 15-3 and CEA as circulating tumor markers in breast cancer patients. Tumour Biol (1991) 0.85

Echocardiographic assessment of cardiac malposition. Am J Cardiol (1974) 0.85

Relation of symptoms to contractility and defect size in infants with ventricular septal defect. Am J Cardiol (1991) 0.85

Preferential expression of HMGI-C isoforms lacking the acidic carboxy terminal in human leukemia. Biochem Biophys Res Commun (1998) 0.85

Changes in cardiac function during extracorporeal membrane oxygenation for persistent pulmonary hypertension in the newborn infant. J Pediatr (1991) 0.84

Left ventricular function by echocardiography in children with fixed aortic stenosis. Am J Cardiol (1976) 0.84

Optical mapping of site-directed cleavages on single DNA molecules by the RecA-assisted restriction endonuclease technique. Proc Natl Acad Sci U S A (1995) 0.83