Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns.

PubWeight™: 2.15‹?› | Rank: Top 2%

🔗 View Article (PMID 7817395)

Published in Trends Biochem Sci on October 01, 1994

Authors

D A Shub1, H Goodrich-Blair, S R Eddy

Author Affiliations

1: Department of Biological Sciences, University at Albany, SUNY 12222.

Articles citing this

Colicin biology. Microbiol Mol Biol Rev (2007) 5.54

Bacteriophage T4 genome. Microbiol Mol Biol Rev (2003) 5.20

Homing endonucleases: keeping the house in order. Nucleic Acids Res (1997) 5.03

SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories. Nucleic Acids Res (2000) 3.56

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res (2001) 3.04

The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains. Nucleic Acids Res (1997) 2.55

Genetic organization of the psbAD region in phages infecting marine Synechococcus strains. Proc Natl Acad Sci U S A (2004) 2.46

Phylogenetic relationships among group II intron ORFs. Nucleic Acids Res (2001) 2.42

Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family. Nucleic Acids Res (1997) 2.33

Barriers to intron promiscuity in bacteria. J Bacteriol (2000) 2.29

Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons. J Virol (1999) 2.14

Splicing of a group II intron involved in the conjugative transfer of pRS01 in lactococci. J Bacteriol (1996) 1.89

From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell (2004) 1.87

Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements. Proc Natl Acad Sci U S A (1999) 1.79

Treble clef finger--a functionally diverse zinc-binding structural motif. Nucleic Acids Res (2001) 1.71

Modular organization of inteins and C-terminal autocatalytic domains. Protein Sci (1998) 1.64

Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea. Cyanobacterial introns and shared ancestry of red and green algae. Plant Cell (1999) 1.59

Mobile group II introns of yeast mitochondrial DNA are novel site-specific retroelements. Mol Cell Biol (1995) 1.59

The genome of Bacillus subtilis bacteriophage SPO1. J Mol Biol (2009) 1.53

Genetic definition of a protein-splicing domain: functional mini-inteins support structure predictions and a model for intein evolution. Proc Natl Acad Sci U S A (1997) 1.51

Intronless homing: site-specific endonuclease SegF of bacteriophage T4 mediates localized marker exclusion analogous to homing endonucleases of group I introns. Genes Dev (2002) 1.51

Homing of a group II intron from Lactococcus lactis subsp. lactis ML3. J Bacteriol (1997) 1.35

Group II intron mobility using nascent strands at DNA replication forks to prime reverse transcription. EMBO J (2003) 1.35

The RmInt1 group II intron has two different retrohoming pathways for mobility using predominantly the nascent lagging strand at DNA replication forks for priming. Nucleic Acids Res (2004) 1.28

Widespread distribution of a group I intron and its three deletion derivatives in the lysin gene of Streptococcus thermophilus bacteriophages. J Virol (2000) 1.27

Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort. Nucleic Acids Res (2002) 1.26

Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase. RNA (2004) 1.25

HNH family subclassification leads to identification of commonality in the His-Me endonuclease superfamily. Protein Sci (2004) 1.22

A diversity of uncharacterized reverse transcriptases in bacteria. Nucleic Acids Res (2008) 1.19

Mutagenic scan of the H-N-H motif of colicin E9: implications for the mechanistic enzymology of colicins, homing enzymes and apoptotic endonucleases. Nucleic Acids Res (2002) 1.18

Transposon-mediated linker insertion scanning mutagenesis of the Escherichia coli McrA endonuclease. J Bacteriol (2004) 1.15

Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA. Nucleic Acids Res (2009) 1.13

Naturally occurring lactococcal plasmid pAH90 links bacteriophage resistance and mobility functions to a food-grade selectable marker. Appl Environ Microbiol (2001) 1.12

T4-Like genome organization of the Escherichia coli O157:H7 lytic phage AR1. J Virol (2011) 1.11

The site-specific DNA endonuclease encoded by a group I intron in the Chlamydomonas pallidostigmatica chloroplast small subunit rRNA gene introduces a single-strand break at low concentrations of Mg2+. Nucleic Acids Res (1995) 1.08

Sequence analysis of Leuconostoc mesenteroides bacteriophage Phi1-A4 isolated from an industrial vegetable fermentation. Appl Environ Microbiol (2010) 1.05

The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga Pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages. J Mol Evol (1997) 1.04

Dispersion of the RmInt1 group II intron in the Sinorhizobium meliloti genome upon acquisition by conjugative transfer. Nucleic Acids Res (2006) 1.04

Non-canonical inteins. Nucleic Acids Res (1998) 1.02

Crystal structural analysis and metal-dependent stability and activity studies of the ColE7 endonuclease domain in complex with DNA/Zn2+ or inhibitor/Ni2+. Protein Sci (2006) 1.01

The zinc ion in the HNH motif of the endonuclease domain of colicin E7 is not required for DNA binding but is essential for DNA hydrolysis. Nucleic Acids Res (2002) 1.00

Metal ions and phosphate binding in the H-N-H motif: crystal structures of the nuclease domain of ColE7/Im7 in complex with a phosphate ion and different divalent metal ions. Protein Sci (2002) 0.97

A likely pathway for formation of mobile group I introns. Curr Biol (2009) 0.97

Probing metal ion binding and conformational properties of the colicin E9 endonuclease by electrospray ionization time-of-flight mass spectrometry. Protein Sci (2002) 0.96

Protein footprinting approach to mapping DNA binding sites of two archaeal homing enzymes: evidence for a two-domain protein structure. Nucleic Acids Res (1996) 0.95

Biochemical characterization of I-CmoeI reveals that this H-N-H homing endonuclease shares functional similarities with H-N-H colicins. Nucleic Acids Res (2000) 0.93

Structural basis for sequence-dependent DNA cleavage by nonspecific endonucleases. Nucleic Acids Res (2006) 0.93

Learning to live together: mutualism between self-splicing introns and their hosts. BMC Biol (2011) 0.93

Evolution of group II introns. Mob DNA (2015) 0.91

Homing endonucleases: from genetic anomalies to programmable genomic clippers. Methods Mol Biol (2014) 0.89

Group I introns and inteins: disparate origins but convergent parasitic strategies. J Bacteriol (2009) 0.87

Homing endonuclease I-TevIII: dimerization as a means to a double-strand break. Nucleic Acids Res (2007) 0.84

A species barrier between bacteriophages T2 and T4: exclusion, join-copy and join-cut-copy recombination and mutagenesis in the dCTPase genes. Genetics (1998) 0.82

Identification and Analysis of a Novel Group of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus. Appl Environ Microbiol (2016) 0.81

NMR study of Ni2+ binding to the H-N-H endonuclease domain of colicin E9. Protein Sci (1999) 0.80

Defining and predicting structurally conserved regions in protein superfamilies. Bioinformatics (2012) 0.79

Group IIC intron with an unusual target of integration in Enterobacter cloacae. J Bacteriol (2011) 0.75

Phage ORF family recombinases: conservation of activities and involvement of the central channel in DNA binding. PLoS One (2014) 0.75

Articles by these authors

Initial sequencing and analysis of the human genome. Nature (2001) 212.86

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res (1997) 142.55

The distributed annotation system. BMC Bioinformatics (2001) 42.98

The Pfam protein families database. Nucleic Acids Res (2000) 42.28

Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins (1997) 26.91

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res (1999) 11.64

ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics (2001) 11.54

Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res (1998) 8.87

Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution. Science (1985) 8.54

Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinformatics (2001) 7.07

A computational screen for methylation guide snoRNAs in yeast. Science (1999) 6.43

A dynamic programming algorithm for RNA structure prediction including pseudoknots. J Mol Biol (1999) 6.19

Homologs of small nucleolar RNAs in Archaea. Science (2000) 5.26

Computational identification of noncoding RNAs in E. coli by comparative genomics. Curr Biol (2001) 4.58

Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics (2000) 3.37

A simple algorithm to infer gene duplication and speciation events on a gene tree. Bioinformatics (2001) 3.26

Bacterial origin of a chloroplast intron: conserved self-splicing group I introns in cyanobacteria. Science (1990) 3.09

Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans. Genome Res (2001) 2.96

The language of RNA: a formal grammar that includes pseudoknots. Bioinformatics (2000) 2.71

Xenorhabdus nematophilus as a model for host-bacterium interactions: rpoS is necessary for mutualism with nematodes. J Bacteriol (2001) 2.10

Protein introns: a new home for endonucleases. Cell (1992) 2.08

Members of the immunoglobulin superfamily in bacteria. Protein Sci (1996) 0.94

A member of the immunoglobulin superfamily in bacteriophage T4. Virus Genes (1997) 0.84