Published in Nucleic Acids Res on November 01, 1997
Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation. Nucleic Acids Res (2001) 3.77
OxyR and SoxRS regulation of fur. J Bacteriol (1999) 3.71
The human XPG gene: gene architecture, alternative splicing and single nucleotide polymorphisms. Nucleic Acids Res (2001) 3.45
Comprehensive splice-site analysis using comparative genomics. Nucleic Acids Res (2006) 3.30
Anatomy of Escherichia coli sigma70 promoters. Nucleic Acids Res (2006) 2.25
Computation-directed identification of OxyR DNA binding sites in Escherichia coli. J Bacteriol (2001) 1.68
Discovery of Fur binding site clusters in Escherichia coli by information theory models. Nucleic Acids Res (2007) 1.67
Information analysis of Fis binding sites. Nucleic Acids Res (1997) 1.66
The human XPC DNA repair gene: arrangement, splice site information content and influence of a single nucleotide polymorphism in a splice acceptor site on alternative splicing and function. Nucleic Acids Res (2002) 1.58
Xeroderma pigmentosum-variant patients from America, Europe, and Asia. J Invest Dermatol (2008) 1.46
Evolution of biological information. Nucleic Acids Res (2000) 1.37
Consensus sequence Zen. Appl Bioinformatics (2002) 1.31
Phosphate control over nitrogen metabolism in Streptomyces coelicolor: direct and indirect negative control of glnR, glnA, glnII and amtB expression by the response regulator PhoP. Nucleic Acids Res (2009) 1.19
Target genes and structure of the direct repeats in the DNA-binding sequences of the response regulator PhoP in Streptomyces coelicolor. Nucleic Acids Res (2008) 1.17
Comprehensive insights into Mycobacterium tuberculosis DevR (DosR) regulon activation switch. Nucleic Acids Res (2011) 1.10
The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally. PLoS Genet (2013) 1.08
Exon skipping in IVD RNA processing in isovaleric acidemia caused by point mutations in the coding region of the IVD gene. Am J Hum Genet (2000) 1.07
Correlation between binding rate constants and individual information of E. coli Fis binding sites. Nucleic Acids Res (2007) 1.02
Comparative in vitro and in silico analyses of variants in splicing regions of BRCA1 and BRCA2 genes and characterization of novel pathogenic mutations. PLoS One (2013) 0.98
Normal and abnormal mechanisms of gene splicing and relevance to inherited skin diseases. J Dermatol Sci (2005) 0.95
Molecular flip-flops formed by overlapping Fis sites. Nucleic Acids Res (2003) 0.92
Genome-wide prediction, display and refinement of binding sites with information theory-based models. BMC Bioinformatics (2003) 0.92
A brief review of molecular information theory. Nano Commun Netw (2010) 0.91
Competition between the GlnR and PhoP regulators for the glnA and amtB promoters in Streptomyces coelicolor. Nucleic Acids Res (2012) 0.88
Interpretation of mRNA splicing mutations in genetic disease: review of the literature and guidelines for information-theoretical analysis. F1000Res (2014) 0.87
V1R promoters are well conserved and exhibit common putative regulatory motifs. BMC Genomics (2007) 0.86
Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands. Nucleic Acids Res (2006) 0.85
Exploration of molecular factors impairing superoxide dismutase isoforms activity in human senile cataractous lenses. Invest Ophthalmol Vis Sci (2013) 0.81
TRII: A Probabilistic Scoring of Drosophila melanogaster Translation Initiation Sites. EURASIP J Bioinform Syst Biol (2010) 0.81
Effects of splicing mutations on NF2-transcripts: transcript analysis and information theoretic predictions. Genes Chromosomes Cancer (2011) 0.79
The influence of repressor DNA binding site architecture on transcriptional control. MBio (2014) 0.79
A Novel Aberrant Splice Site Mutation in RAB23 Leads to an Eight Nucleotide Deletion in the mRNA and Is Responsible for Carpenter Syndrome in a Consanguineous Emirati Family. Mol Syndromol (2012) 0.76
Two novel FBN1 mutations associated with ectopia lentis and marfanoid habitus in two Chinese families. Mol Vis (2009) 0.75
Sequence logos: a new way to display consensus sequences. Nucleic Acids Res (1990) 36.74
Information content of binding sites on nucleotide sequences. J Mol Biol (1986) 30.48
Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Res (1984) 21.53
Nucleotide sequence of bacteriophage lambda DNA. J Mol Biol (1982) 19.80
The human mutator gene homolog MSH2 and its association with hereditary nonpolyposis colon cancer. Cell (1993) 13.54
Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli. Nucleic Acids Res (1982) 9.99
Mutations of a mutS homolog in hereditary nonpolyposis colorectal cancer. Cell (1993) 9.93
A design for computer nucleic-acid-sequence storage, retrieval, and manipulation. Nucleic Acids Res (1982) 7.79
Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Annu Rev Biochem (1989) 7.25
Viral integration and excision: structure of the lambda att sites. Science (1977) 6.66
Searching databases of conserved sequence regions by aligning protein multiple-alignments. Nucleic Acids Res (1996) 5.68
Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites. J Mol Biol (1992) 5.38
Consensus patterns in DNA. Methods Enzymol (1990) 4.89
Delila system tools. Nucleic Acids Res (1984) 4.84
Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway. Cell (1987) 3.94
Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Res (1990) 3.46
The Fis protein: it's not just for DNA inversion anymore. Mol Microbiol (1992) 3.02
Quantitative analysis of the relationship between nucleotide sequence and functional activity. Nucleic Acids Res (1986) 3.02
Mutational analysis of a prokaryotic recombinational enhancer element with two functions. EMBO J (1989) 2.31
Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis protein. J Bacteriol (1991) 2.16
Cleavage site analysis in picornaviral polyproteins: discovering cellular targets by neural networks. Protein Sci (1996) 2.12
Reading of DNA sequence logos: prediction of major groove binding by information theory. Methods Enzymol (1996) 1.77
Multiple effects of Fis on integration and the control of lysogeny in phage lambda. J Bacteriol (1991) 1.57
Information analysis of sequences that bind the replication initiator RepA. J Mol Biol (1993) 1.43
The Blocks database--a system for protein classification. Nucleic Acids Res (1996) 1.38
Characterization of the bacteriophage lambda excisionase (Xis) protein: the C-terminus is required for Xis-integrase cooperativity but not for DNA binding. EMBO J (1992) 1.30
Theory of molecular machines. II. Energy dissipation from molecular machines. J Theor Biol (1991) 1.28
Theory of molecular machines. I. Channel capacity of molecular machines. J Theor Biol (1991) 1.17
Using information content and base frequencies to distinguish mutations from genetic polymorphisms in splice junction recognition sites. Hum Mutat (1995) 1.10
The promoter of the tgt/sec operon in Escherichia coli is preceded by an upstream activation sequence that contains a high affinity FIS binding site. Nucleic Acids Res (1992) 1.02
Determination of the binding sites of RepA, a replication initiator protein of the basic replicon of the IncN group plasmid pCU1. J Mol Biol (1995) 0.97