The extended environment of mononuclear metal centers in protein structures.

PubWeight™: 1.34‹?› | Rank: Top 10%

🔗 View Article (PMC 24917)

Published in Proc Natl Acad Sci U S A on December 23, 1997

Authors

S Karlin1, Z Y Zhu, K D Karlin

Author Affiliations

1: Department of Mathematics, Stanford University, Stanford, CA 94305-2125, USA. fd.zgg@forsythe.stanford.edu

Articles citing this

Structural classification of zinc fingers: survey and summary. Nucleic Acids Res (2003) 3.94

Activity of the yeast MNN1 alpha-1,3-mannosyltransferase requires a motif conserved in many other families of glycosyltransferases. Proc Natl Acad Sci U S A (1998) 2.06

Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins. Proc Natl Acad Sci U S A (2000) 2.01

Barcodes for genomes and applications. BMC Bioinformatics (2008) 1.70

Classification of mononuclear zinc metal sites in protein structures. Proc Natl Acad Sci U S A (1997) 1.32

Perturbations of the T1 copper site in the CotA laccase from Bacillus subtilis: structural, biochemical, enzymatic and stability studies. J Biol Inorg Chem (2006) 1.04

Minimal functional sites allow a classification of zinc sites in proteins. PLoS One (2011) 1.02

Genomic analysis reveals widespread occurrence of new classes of copper nitrite reductases. J Biol Inorg Chem (2007) 0.94

Predicting nonspecific ion binding using DelPhi. Biophys J (2012) 0.91

Investigation of metal binding and activation of Escherichia coli glyoxalase I: kinetic, thermodynamic and mutagenesis studies. Biochem J (2004) 0.89

Evidence of the participation of remote residues in the catalytic activity of Co-type nitrile hydratase from Pseudomonas putida. Biochemistry (2011) 0.87

Latex clearing protein-an oxygenase cleaving poly(cis-1,4-isoprene) rubber at the cis double bonds. Appl Environ Microbiol (2014) 0.85

Mouse aminoacylase 3: a metalloenzyme activated by cobalt and nickel. Biochim Biophys Acta (2009) 0.83

The removal of a disulfide bridge in CotA-laccase changes the slower motion dynamics involved in copper binding but has no effect on the thermodynamic stability. J Biol Inorg Chem (2011) 0.81

Copper-peptide complex structure and reactivity when found in conserved His-X(aa)-His sequences. J Am Chem Soc (2014) 0.78

A new vector for identification of prokaryotes and their variable-size genomes. Curr Microbiol (2012) 0.77

Analyses of cobalt-ligand and potassium-ligand bond lengths in metalloproteins: trends and patterns. J Mol Model (2014) 0.76

A comparative molecular dynamics study of methylation state specificity of JMJD2A. PLoS One (2011) 0.76

Ion binding to biological macromolecules. Asian J Phys (2014) 0.76

Characterization of the signaling domain of the NO-responsive regulator NorR from Ralstonia eutropha H16 by site-directed mutagenesis. J Bacteriol (2007) 0.76

Structural principles for computational and de novo design of 4Fe-4S metalloproteins. Biochim Biophys Acta (2015) 0.75

Insights into the posttranslational assembly of the Mo-, S- and Cu-containing cluster in the active site of CO dehydrogenase of Oligotropha carboxidovorans. J Biol Inorg Chem (2014) 0.75

Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics. Int J Mol Sci (2016) 0.75

An examination of the binding behavior of histidine-containing peptides with immobilized metal complexes derived from the macrocyclic ligand, 1,4,7-triazacyclononane. J Biol Inorg Chem (2006) 0.75

Benchmarking a computational design method for the incorporation of metal ion-binding sites at symmetric protein interfaces. Protein Sci (2017) 0.75

Articles cited by this

Structural and Functional Aspects of Metal Sites in Biology. Chem Rev (1996) 8.70

Enlarged representative set of protein structures. Protein Sci (1994) 7.98

Dioxygen Activation by Enzymes with Mononuclear Non-Heme Iron Active Sites. Chem Rev (1996) 3.13

Packing of alpha-helices: geometrical constraints and contact areas. J Mol Biol (1978) 2.95

Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad. Science (1995) 2.68

Mechanisms Whereby Mononuclear Copper Proteins Functionalize Organic Substrates. Chem Rev (1996) 2.64

Where metal ions bind in proteins. Proc Natl Acad Sci U S A (1990) 2.56

Crystal structure of soybean lipoxygenase L-1 at 1.4 A resolution. Biochemistry (1996) 2.34

Refined crystal structure of ascorbate oxidase at 1.9 A resolution. J Mol Biol (1992) 2.18

Clusters of charged residues in protein three-dimensional structures. Proc Natl Acad Sci U S A (1996) 1.50

Manganese Enzymes with Binuclear Active Sites. Chem Rev (1996) 1.40

Geometry of interaction of metal ions with histidine residues in protein structures. Protein Eng (1990) 1.37

Classification of mononuclear zinc metal sites in protein structures. Proc Natl Acad Sci U S A (1997) 1.32

Measuring residue associations in protein structures. Possible implications for protein folding. J Mol Biol (1994) 1.26

Characterizations of diverse residue clusters in protein three-dimensional structures. Proc Natl Acad Sci U S A (1996) 1.21

Perspectives on non-heme iron protein chemistry. Adv Protein Chem (1991) 1.07

Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc. Biochemistry (1995) 1.06

Articles by these authors

Construction and functional characterization of polyomavirus genomes that separately encode the three early proteins. J Virol (1984) 2.02

Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins. Biochem Soc Trans (1993) 1.37

Classification of mononuclear zinc metal sites in protein structures. Proc Natl Acad Sci U S A (1997) 1.32

(F(8)TPP)Fe(II)/O(2) reactivity studies [F(8)TPP = tetrakis(2,6-difluorophenyl)porphyrinate(2-)]: spectroscopic (UV-Visible and NMR) and kinetic study of solvent-dependent (Fe/O(2) = 1:1 or 2:1) reversible O(2)-reduction and ferryl formation. Inorg Chem (2001) 1.25

Characterizations of diverse residue clusters in protein three-dimensional structures. Proc Natl Acad Sci U S A (1996) 1.21

Predicted highly expressed and putative alien genes of Deinococcus radiodurans and implications for resistance to ionizing radiation damage. Proc Natl Acad Sci U S A (2001) 1.20

Isolation of haemorrhagic fever with renal syndrome virus from Suncus murinus, an insectivore. Lancet (1985) 1.09

Detection of Shigella and enteroinvasive Escherichia coli using polymerase chain reaction. J Diarrhoeal Dis Res (1993) 1.00

Characterization of two parvalbumin genes and their association with growth traits in Asian seabass (Lates calcarifer). Anim Genet (2006) 0.99

Identification and verification of QTL associated with growth traits in two genetic backgrounds of Barramundi (Lates calcarifer). Anim Genet (2007) 0.96

Dicopper(I) complexes of unsymmetrical binucleating ligands and their dioxygen reactivities. Inorg Chem (2001) 0.95

Dioxygen reactivity of mononuclear heme and copper components yielding a high-spin heme-peroxo-cu complex. J Am Chem Soc (2001) 0.94

Copper(I) complexes, copper(I)/O(2) reactivity, and copper(II) complex adducts, with a series of tetradentate tripyridylalkylamine tripodal ligands. Inorg Chem (2001) 0.93

BCG in China. Chin Med J (Engl) (1982) 0.92

Discovery of four natural clones in a crayfish species Procambarus clarkii. Int J Biol Sci (2008) 0.91

Dioxygen-binding kinetics and thermodynamics of a series of dicopper(I) complexes with bis[2-(2-pyridyl)ethyl]amine tridendate chelators forming side-on peroxo-bridged dicopper(II) adducts. Inorg Chem (2000) 0.91

Isolation and characterization of beta-actin gene of carp (Cyprinus carpio). DNA Seq (1990) 0.90

Complete nucleotide sequence of the S10 genome segment of grass carp reovirus (GCRV). Dis Aquat Organ (2001) 0.89

Atom density in protein structures. Proc Natl Acad Sci U S A (1999) 0.88

Mapping QTL for an adaptive trait: the length of caudal fin in Lates calcarifer. Mar Biotechnol (NY) (2010) 0.86

Dioxygen-activating bio-inorganic model complexes. Curr Opin Chem Biol (1999) 0.85

The recognition of protein structure and function from sequence: adding value to genome data. Philos Trans R Soc Lond B Biol Sci (1994) 0.85

Identification of differentially expressed genes from the cross-subfamily cloned embryos derived from zebrafish nuclei and rare minnow enucleated eggs. Theriogenology (2007) 0.85

The complete mitochondrial genome sequence and characterization of single-nucleotide polymorphisms in the control region of the Asian seabass (Lates calcarifer). Mar Biotechnol (NY) (2006) 0.84

Hepatitis C virus infection in blood donors in the People's Republic of China. Transfusion (1999) 0.84

Formation, characterization, and reactivity of bis(mu-oxo)dinickel(III) complexes supported by a series of bis[2-(2-pyridyl)ethyl]amine ligands. J Am Chem Soc (2001) 0.83

Recognition and strand scission at junctions between single- and double-stranded DNA by a trinuclear copper complex. J Am Chem Soc (2001) 0.82

The alpha-helix as seen from the protein tertiary structure: a 3-D structural classification. Biophys Chem (1995) 0.81

Distinct regions of periaqueductal gray (PAG) are involved in freezing behavior in hooded PVG rats on the cat-freezing test apparatus. Neurosci Lett (2004) 0.81

Transcoronary chemical ablation of ventricular tachycardia. Chin Med J (Engl) (1992) 0.81

Comparisons of the sequences, 3-D structures and mechanisms of pepsin-like and retroviral aspartic proteinases. Adv Exp Med Biol (1991) 0.81

Isocyanide binding to the copper(I) centers of the catalytic core of peptidylglycine monooxygenase (PHMcc). J Biol Inorg Chem (2001) 0.80

A serotypic study of hemorrhagic fever with renal syndrome in rural China. Am J Trop Med Hyg (1995) 0.80

Extended metal environments of cytochrome c oxidase structures. Biochemistry (1998) 0.80

Dicopper peroxo complexes: low temperature stopped-flow reaction kinetics of [(BQPA)CuI]+ and [(Me2-TMPA)CuI]+. Micron (2004) 0.80

Large-area fabrication of periodic Fe nanorings with controllable aspect ratios in porous alumina templates. Nanotechnology (2006) 0.78

Identification of differential transcript profiles between mutual crossbred embryos of zebrafish (Danio rerio) and Chinese rare minnow (Gobiocypris rarus) by cDNA-AFLP. Theriogenology (2008) 0.78

Cloning and characterization of the calreticulin gene in Asian seabass (Lates calcarifer). Animal (2012) 0.78

Efficacy of inactivated vaccine containing cyto-hemagglutinin against epidemic hemorrhagic fever in rabbits. Chin Med J (Engl) (1989) 0.78

[Utilization of medicinal plant resources of genus Stephania of Menispermaceae in China]. Yao Xue Xue Bao (1983) 0.78

[Adenoma of the gallbladder and its canceration: an analysis of 88 cases]. Zhonghua Wai Ke Za Zhi (1994) 0.78

Mechanism for synergism between sulphonamides and trimethoprim clarified. J Pharm Pharmacol (1996) 0.78

Molecular characterization and expression of the M6 gene of grass carp hemorrhage virus (GCHV), an aquareovirus. Arch Virol (2001) 0.78

Propagation of epidemic hemorrhagic fever virus in Meriones unguiculatus. Chin Med J (Engl) (1986) 0.77

Reversible carbon monoxide photodissociation from Cu(I) coordination compounds. Inorg Chem (2001) 0.77

In vitro models for prediction of antimicrobial activity: a pharmacokinetic and pharmacodynamic perspective. J Chemother (1997) 0.77

Serologic and molecular characterization of the B(A) blood group in the Chinese population. Immunohematology (2007) 0.77

[Advances in the studies of saponins from Aralia]. Yao Xue Xue Bao (1997) 0.76

Characterization of cDNA encoding immunoglobulin light chain of the mandarin fish (Siniperca chuatsi). Vet Immunol Immunopathol (2003) 0.76

The integration of four major determinants of antibiotic action: bactericidal activity, postantibiotic effect, susceptibility, and pharmacokinetics. J Chemother (2002) 0.76

Analysis of HLA-DM polymorphisms in the Chinese Han population. Tissue Antigens (2012) 0.75

Antibiotic exposure and its relationship to postantibiotic effect and bactericidal activity: constant versus exponentially decreasing tobramycin concentrations against Pseudomonas aeruginosa. Antimicrob Agents Chemother (1997) 0.75

cDNA sequence encoding immunoglobulin M heavy chain of the mandarin fish Siniperca chuatsi. Fish Shellfish Immunol (2003) 0.75

[Molecular characterization of hantavirus Zhejiang isolate ZT10 strain from M. fartis]. Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi (2008) 0.75

Antibody-based spot test for NADH-cytochrome b5 reductase activity for the laboratory diagnosis of congenital methemoglobinemia. Clin Chim Acta (1998) 0.75

[Experimental study on the hepatitis B virus in leeches as carriers]. Zhonghua Liu Xing Bing Xue Za Zhi (1986) 0.75

Production and application of monoclonal antibodies to polyamine--spermidine McAb. Proc Chin Acad Med Sci Peking Union Med Coll (1989) 0.75

Gycomoside I: a new dammarane saponin from Gynostemma compressum. Planta Med (1993) 0.75

[Studies on racial difference in distribution of apoE phenotypes and frequencies of apoE alleles--comparison of Chinese and Western populations]. Zhongguo Yi Xue Ke Xue Yuan Xue Bao (1987) 0.75

[Comparative study on antibody levels of vaccination group and control group after 4 years of immunized with type B inactivated vaccine against hemorrhagic fever with renal syndrome]. Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi (2001) 0.75

A compound heterozygote in the NADH-cytochrome b5 reductase gene from a Chinese patient with hereditary methemoglobinemia type I. Int J Hematol (2000) 0.75

Study of hamsters infected with epidemic hemorrhagic fever virus. Chin Med J (Engl) (1988) 0.75

[Chemical constituents of Acanthopanax giraldii Harms var. hispidus Hoo]. Zhongguo Zhong Yao Za Zhi (1993) 0.75

[Electroporation of sperm to introduce foreign DNA into the genome of Pinctada maxima (Jameson)]. Sheng Wu Gong Cheng Xue Bao (2000) 0.75

Animal model of rabbits for researching epidemic hemorrhagic fever. Chin Med J (Engl) (1986) 0.75

[A survey on botanical origins of drug Xue Lianhua produced in China]. Zhongguo Zhong Yao Za Zhi (2000) 0.75

[The pharmacognosy and utilization of the resources of Picrasma quassioides]. Zhong Yao Tong Bao (1983) 0.75

Identification of a novel point mutation (Leu72Pro) in the NADH-cytochrome b5 reductase gene of a patient with hereditary methaemoglobinaemia type I. Br J Haematol (1998) 0.75

Optoelectronic properties of CdSe0.75S0.25 nanocrystals assembled into micro-electrodes. J Nanosci Nanotechnol (2013) 0.75

[Localization of the antigen in erythrocytic stages of Plasmodium yoelii by immuno-electron microscopy]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi (1992) 0.75

[Utilization of medicinal plant resources of the genus Cyclea of Menispermaceae in China]. Yao Xue Xue Bao (1983) 0.75

[Pharmacognostical study on eighteen medicinal species in genus Stephania]. Yao Xue Xue Bao (1983) 0.75

A novel mutation in the NADH-cytochrome b5 reductase gene of a Chinese patient with recessive congenital methemoglobinemia. Blood (2000) 0.75

[Ultrastructural localization of 185 kDa and 82/41 kDa protective antigens in Plasmodium falciparum, FCC1/HN]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi (1993) 0.75

[Prokaryotic expression of recombinant grass carp growth hormone]. Yi Chuan Xue Bao (2001) 0.75

[Ultrastructural localization of 145/102 kDa antigens in erythrocytic stages of Plasmodium falciparum]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi (1993) 0.75

[Nursing of patients undergoing auto-control ileostomy]. Zhonghua Hu Li Za Zhi (1985) 0.75

Characterizations of four toll-like receptor 4s in grass carp Ctenopharyngodon idellus and their response to grass carp reovirus infection and lipopolysaccharide stimulation. J Fish Biol (2015) 0.75

[Studies on chemical constituents of Gynostemma compressum]. Yao Xue Xue Bao (1993) 0.75

Cells behaviors and genotoxicity on topological surface. Mater Sci Eng C Mater Biol Appl (2013) 0.75

[Biosynthesis and function of heat shock protein]. Sheng Li Ke Xue Jin Zhan (1991) 0.75

Clinical analysis of therapeutic efficacy in 365 cases of cholelithiasis treated by pressure over ear points. J Tradit Chin Med (1986) 0.75