Published in Mol Cell Biol on August 01, 1999
High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev (2000) 3.79
The glucocorticoid receptor inhibits NFkappaB by interfering with serine-2 phosphorylation of the RNA polymerase II carboxy-terminal domain. Genes Dev (2000) 3.71
Global regulation of promoter melting in naive lymphocytes. Cell (2013) 2.05
A model of repression: CTD analogs and PIE-1 inhibit transcriptional elongation by P-TEFb. Genes Dev (2003) 1.57
Cdk7 is required for full activation of Drosophila heat shock genes and RNA polymerase II phosphorylation in vivo. Mol Cell Biol (2003) 1.39
Mouse model of endemic Burkitt translocations reveals the long-range boundaries of Ig-mediated oncogene deregulation. Proc Natl Acad Sci U S A (2012) 0.88
Marking the start site of RNA polymerase III transcription: the role of constraint, compaction and continuity of the transcribed DNA strand. EMBO J (2002) 0.82
Archaeal TFEα/β is a hybrid of TFIIE and the RNA polymerase III subcomplex hRPC62/39. Elife (2015) 0.79
XPB induces C1D expression to counteract UV-induced apoptosis. Mol Cancer Res (2010) 0.78
RNA polymerase II pausing as a context-dependent reader of the genome. Biochem Cell Biol (2015) 0.77
Genome-wide uniformity of human 'open' pre-initiation complexes. Genome Res (2016) 0.75
Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved? Biochim Biophys Acta (2016) 0.75
Characterization of the yeast transcriptome. Cell (1997) 11.33
Five intermediate complexes in transcription initiation by RNA polymerase II. Cell (1989) 9.22
A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell (1994) 8.44
Components and dynamics of DNA replication complexes in S. cerevisiae: redistribution of MCM proteins and Cdc45p during S phase. Cell (1997) 8.23
SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast. Genes Dev (1997) 7.81
A multisubunit complex associated with the RNA polymerase II CTD and TATA-binding protein in yeast. Cell (1993) 5.35
Human general transcription factor IIH phosphorylates the C-terminal domain of RNA polymerase II. Nature (1992) 4.63
RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells. Mol Cell Biol (1986) 4.40
DNA topology and a minimal set of basal factors for transcription by RNA polymerase II. Cell (1993) 3.77
Three functional classes of transcriptional activation domain. Mol Cell Biol (1996) 3.62
Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II. Cell (1994) 3.61
Common themes in assembly and function of eukaryotic transcription complexes. Annu Rev Biochem (1995) 3.60
Binding of basal transcription factor TFIIH to the acidic activation domains of VP16 and p53. Mol Cell Biol (1994) 3.46
Facilitated binding of GAL4 and heat shock factor to nucleosomal templates: differential function of DNA-binding domains. Genes Dev (1991) 3.14
Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. Genes Dev (1999) 2.94
Association of Cdk-activating kinase subunits with transcription factor TFIIH. Nature (1995) 2.87
RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcription. Nature (1994) 2.73
TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes. Genes Dev (1994) 2.67
Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7. Mol Cell (1999) 2.67
CTD kinase associated with yeast RNA polymerase II initiation factor b. Cell (1991) 2.48
Requirement for TFIIH kinase activity in transcription by RNA polymerase II. Nature (1995) 2.43
Promoter melting and TFIID complexes on Drosophila genes in vivo. Genes Dev (1992) 2.35
Three transitions in the RNA polymerase II transcription complex during initiation. EMBO J (1997) 2.27
Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH. EMBO J (1996) 2.13
In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster. Mol Cell Biol (1985) 2.12
DNA melting on yeast RNA polymerase II promoters. Science (1993) 2.10
The multiple roles of transcription/repair factor TFIIH. Trends Biochem Sci (1996) 1.94
The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA. EMBO J (1995) 1.77
Dynamic protein-DNA architecture of a yeast heat shock promoter. Mol Cell Biol (1995) 1.58
The Saccharomyces cerevisiae DNA repair gene RAD25 is required for transcription by RNA polymerase II. Genes Dev (1993) 1.57
Genomic footprinting of the yeast HSP82 promoter reveals marked distortion of the DNA helix and constitutive occupancy of heat shock and TATA elements. J Mol Biol (1990) 1.52
The multifunctional TFIIH complex and transcriptional control. Trends Biochem Sci (1994) 1.51
Transcription initiation by RNA polymerase II in vitro. At least two nucleotides must be added to form a stable ternary complex. J Biol Chem (1987) 1.49
Three-dimensional structure of yeast RNA polymerase II at 16 A resolution. Cell (1991) 1.39
Two-dimensional crystallography of TFIIB- and IIE-RNA polymerase II complexes: implications for start site selection and initiation complex formation. Cell (1996) 1.34
Two conformations of RNA polymerase II revealed by electron crystallography. J Mol Biol (1997) 1.23
A three-step pathway of transcription initiation leading to promoter clearance at an activation RNA polymerase II promoter. Mol Cell Biol (1996) 1.15
Kinetic studies of denaturation and reaction with formaldehyde on polydeoxyribonucleotides. Biochemistry (1971) 0.91
The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell (1988) 7.23
A novel arrangement of tandemly repeated genes at a major heat shock site in D. melanogaster. Cell (1978) 6.44
Germline transformation used to define key features of heat-shock response elements. Science (1988) 4.90
In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes. Proc Natl Acad Sci U S A (1993) 4.82
Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation. Nature (1994) 4.57
RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells. Mol Cell Biol (1986) 4.40
Stable binding of Drosophila heat shock factor to head-to-head and tail-to-tail repeats of a conserved 5 bp recognition unit. Cell (1989) 4.11
New heat shock puffs and beta-galactosidase activity resulting from transformation of Drosophila with an hsp70-lacZ hybrid gene. Cell (1983) 4.06
Fractionation of DNA fragments by polyethylene glycol induced precipitation. Methods Enzymol (1980) 3.93
Determinants of heat shock-induced chromosome puffing. Cell (1985) 3.91
Postinitiation transcriptional control in Drosophila melanogaster. Mol Cell Biol (1990) 3.83
High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev (2000) 3.79
Size fractionation of double-stranded DNA by precipitation with polyethylene glycol. Nucleic Acids Res (1975) 3.06
Topoisomerase I interacts with transcribed regions in Drosophila cells. Cell (1986) 2.65
DNA sequence requirements for generating paused polymerase at the start of hsp70. Genes Dev (1992) 2.63
Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell (1997) 2.57
Rapid changes in Drosophila transcription after an instantaneous heat shock. Mol Cell Biol (1993) 2.57
A germline transformation analysis reveals flexibility in the organization of heat shock consensus elements. Nucleic Acids Res (1987) 2.48
Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit. Cell (1991) 2.48
Promoter melting and TFIID complexes on Drosophila genes in vivo. Genes Dev (1992) 2.35
Structure and expression of ubiquitin genes of Drosophila melanogaster. Mol Cell Biol (1988) 2.32
HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor, TFIID, and RNA polymerase II binding sites. Genes Dev (1995) 2.22
RNA polymerase II pauses at the 5' end of the transcriptionally induced Drosophila hsp70 gene. Mol Cell Biol (1991) 2.18
Spatial and temporal pattern of hsp26 expression during normal development. EMBO J (1986) 2.14
In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster. Mol Cell Biol (1985) 2.12
Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing. J Mol Biol (1995) 2.12
DNA melting on yeast RNA polymerase II promoters. Science (1993) 2.10
Different cyclic AMP requirements for induction of the arabinose and lactose operons of Escherichia coli. J Mol Biol (1973) 2.04
The SR protein B52/SRp55 is essential for Drosophila development. Mol Cell Biol (1994) 2.02
Mediator, not holoenzyme, is directly recruited to the heat shock promoter by HSF upon heat shock. Mol Cell (2001) 2.00
Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin. Genes Dev (1991) 1.95
TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family. Proc Natl Acad Sci U S A (1999) 1.86
Direct cloning of DNA that interacts in vivo with a specific protein: application to RNA polymerase II and sites of pausing in Drosophila. Nucleic Acids Res (1998) 1.86
Dynamics of potentiation and activation: GAGA factor and its role in heat shock gene regulation. Nucleic Acids Res (1997) 1.72
Cloning and characterization of nine heat-shock-induced mRNAs of Drosophila melanogaster. Gene (1981) 1.70
Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes. Proc Natl Acad Sci U S A (1984) 1.68
Recruiting TATA-binding protein to a promoter: transcriptional activation without an upstream activator. Mol Cell Biol (1995) 1.67
Distribution of GAGA protein on Drosophila genes in vivo. Genes Dev (1995) 1.65
A specific RNA hairpin loop structure binds the RNA recognition motifs of the Drosophila SR protein B52. Mol Cell Biol (1997) 1.64
RNA aptamers as effective protein antagonists in a multicellular organism. Proc Natl Acad Sci U S A (1999) 1.62
The concentration of B52, an essential splicing factor and regulator of splice site choice in vitro, is critical for Drosophila development. Mol Cell Biol (1994) 1.62
A TRF1:BRF complex directs Drosophila RNA polymerase III transcription. Cell (2000) 1.59
A hypersensitive site in hsp70 chromatin requires adjacent not internal DNA sequence. Nature (1985) 1.58
Dynamic protein-DNA architecture of a yeast heat shock promoter. Mol Cell Biol (1995) 1.58
High-resolution mapping of DNase I-hypersensitive sites of Drosophila heat shock genes in Drosophila melanogaster and Saccharomyces cerevisiae. Mol Cell Biol (1984) 1.58
Transcriptional activation independent of TFIIH kinase and the RNA polymerase II mediator in vivo. Nature (1998) 1.57
Localization of the hsp83 transcript within a 3292 nucleotide sequence from the 63B heat shock locus of D. melanogaster. Nucleic Acids Res (1983) 1.50
Fine structure analyses of the Drosophila and Saccharomyces heat shock factor--heat shock element interactions. Nucleic Acids Res (1994) 1.47
Promoter sequence containing (CT)n.(GA)n repeats is critical for the formation of the DNase I hypersensitive sites in the Drosophila hsp26 gene. J Mol Biol (1992) 1.43
The regulatory region of the L-arabinose operon: a physical, genetic and physiological study. J Mol Biol (1975) 1.40
Optimal heat-induced expression of the Drosophila hsp26 gene requires a promoter sequence containing (CT)n.(GA)n repeats. J Mol Biol (1990) 1.35
Heat shock and developmental regulation of the Drosophila melanogaster hsp83 gene. Mol Cell Biol (1989) 1.35
Multiple, compensatory regulatory elements specify spermatocyte-specific expression of the Drosophila melanogaster hsp26 gene. Mol Cell Biol (1990) 1.27
Two closely linked transcription units within the 63B heat shock puff locus of D. melanogaster display strikingly different regulation. Nucleic Acids Res (1981) 1.24
A consensus sequence polymer inhibits in vivo expression of heat shock genes. Mol Cell Biol (1986) 1.24
Nuclear run-on assays: assessing transcription by measuring density of engaged RNA polymerases. Methods Enzymol (1999) 1.22
HSF recruitment and loss at most Drosophila heat shock loci is coordinated and depends on proximal promoter sequences. Chromosoma (1996) 1.17
Cooperative and competitive protein interactions at the hsp70 promoter. J Biol Chem (1997) 1.16
Protein-DNA cross-linking as a means to determine the distribution of proteins on DNA in vivo. Methods Cell Biol (1991) 1.15
GAGA factor binding to DNA via a single trinucleotide sequence element. Nucleic Acids Res (1998) 1.12
The isolation and characterization of plaque-forming arabinose transducing bacteriophage lambda. J Mol Biol (1975) 1.11
Pre-mRNA splicing by the essential Drosophila protein B52: tissue and target specificity. Mol Cell Biol (2000) 1.10
Polymerase processivity and termination on Drosophila heat shock genes. J Biol Chem (1993) 1.09
DNA sequence analysis reveals extensive homologies of regions preceding hsp70 and alphabeta heat shock genes in Drosophila melanogaster. Proc Natl Acad Sci U S A (1981) 1.08
A highly conserved domain of RNA polymerase II shares a functional element with acidic activation domains of upstream transcription factors. Mol Cell Biol (1994) 1.07
The upstream activator CTF/NF1 and RNA polymerase II share a common element involved in transcriptional activation. Nucleic Acids Res (1994) 1.06
Cooperative binding of heat shock transcription factor to the Hsp70 promoter in vivo and in vitro. J Biol Chem (1994) 1.06
DNA distortion and multimerization: novel functions of the glutamine-rich domain of GAGA factor. J Mol Biol (1999) 1.06
Binding of heat shock factor to and transcriptional activation of heat shock genes in Drosophila. Nucleic Acids Res (1995) 1.05
Genomic organization and transcription of the alpha beta heat shock DNA in Drosophila melanogaster. Nucleic Acids Res (1981) 1.05
Sodium salicylate and yeast heat shock gene transcription. J Biol Chem (1995) 1.04
The positive and negative transcriptional regulation of the Drosophila Gapdh-2 gene. Genes Dev (1988) 1.04
Localization and expression of transformed DNA sequences within heat shock puffs of Drosophila melanogaster. Chromosoma (1985) 1.03
Promoter activity of Tat at steps subsequent to TATA-binding protein recruitment. Mol Cell Biol (1997) 1.02
Sex-specific control of Drosophila melanogaster yolk protein 1 gene expression is limited to transcription. Mol Cell Biol (1988) 1.01
In vitro selection of RNA molecules that displace cocaine from the membrane-bound nicotinic acetylcholine receptor. Proc Natl Acad Sci U S A (1998) 1.00
The regulatory region of the L-arabinose operon: its isolation on a 1000 base-pair fragment from DNA heteroduplexes. J Mol Biol (1975) 1.00
Drosophila heat shock system as a general model to investigate transcriptional regulation. Cold Spring Harb Symp Quant Biol (2011) 0.99
Update for users of the Cornell sequence analysis package. Nucleic Acids Res (1984) 0.97
Glycogen synthase phosphatase interacts with heat shock factor to activate CUP1 gene transcription in Saccharomyces cerevisiae. Mol Cell Biol (1999) 0.95
Different upstream transcriptional activators have distinct coactivator requirements. Genes Dev (1999) 0.93
Distribution of B52 within a chromosomal locus depends on the level of transcription. Mol Biol Cell (1994) 0.92
Localized heat-shock induction in Drosophila melanogaster. J Exp Zool (1988) 0.90
Expression of the major heat shock gene of Drosophila melanogaster in Saccharomyces cerevisiae. Nucleic Acids Res (1986) 0.86
Protein-DNA cross-linking reveals dramatic variation in RNA polymerase II density on different histone repeats of Drosophila melanogaster. Mol Cell Biol (1987) 0.86
Closely related DNA sequences specify distinct patterns of developmental expression in Drosophila melanogaster. Mol Cell Biol (1990) 0.75