Published in Nucleic Acids Res on January 01, 2000
The RDP-II (Ribosomal Database Project). Nucleic Acids Res (2001) 27.07
Bacterial diversity in human subgingival plaque. J Bacteriol (2001) 14.60
rrndb: the Ribosomal RNA Operon Copy Number Database. Nucleic Acids Res (2001) 9.36
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl Environ Microbiol (2000) 5.75
Molecular analysis of bacterial species associated with childhood caries. J Clin Microbiol (2002) 5.49
RNAML: a standard syntax for exchanging RNA information. RNA (2002) 5.34
In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes. Appl Environ Microbiol (2001) 5.03
Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species. J Clin Microbiol (2001) 4.63
Empirical and theoretical bacterial diversity in four Arizona soils. Appl Environ Microbiol (2002) 4.26
Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl Environ Microbiol (2002) 4.26
Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities. Appl Environ Microbiol (2001) 4.01
Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing. Appl Environ Microbiol (2001) 3.47
Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization. Appl Environ Microbiol (2000) 3.36
Archaeal diversity in waters from deep South African gold mines. Appl Environ Microbiol (2001) 3.36
Census of the bacterial community of the gypsy moth larval midgut by using culturing and culture-independent methods. Appl Environ Microbiol (2004) 2.55
Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of okhotsk. Appl Environ Microbiol (2003) 2.41
Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques. Appl Environ Microbiol (2001) 2.36
Phylogenetic and ecological analysis of novel marine stramenopiles. Appl Environ Microbiol (2004) 2.35
Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil. Appl Environ Microbiol (2001) 2.29
Prevalent bacterial species and novel phylotypes in advanced noma lesions. J Clin Microbiol (2002) 2.23
Microbial ecology of an extreme acidic environment, the Tinto River. Appl Environ Microbiol (2003) 2.21
16S rRNA-based analysis of microbiota from the cecum of broiler chickens. Appl Environ Microbiol (2002) 2.16
The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics. Photosynth Res (2001) 2.14
Discovering common stem-loop motifs in unaligned RNA sequences. Nucleic Acids Res (2001) 2.12
Bacterial diversity analysis of larvae and adult midgut microflora using culture-dependent and culture-independent methods in lab-reared and field-collected Anopheles stephensi-an Asian malarial vector. BMC Microbiol (2009) 2.10
Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe. Appl Environ Microbiol (2002) 2.03
Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Appl Environ Microbiol (2002) 2.02
Microbial risk indicators of early childhood caries. J Clin Microbiol (2005) 2.01
The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis. J Bacteriol (2004) 1.97
New insight into RNase P RNA structure from comparative analysis of the archaeal RNA. RNA (2001) 1.91
Distribution of archaea in a black smoker chimney structure. Appl Environ Microbiol (2001) 1.82
Diversity of bacteria associated with natural aphid populations. Appl Environ Microbiol (2003) 1.74
Molecular identification of microorganisms from endodontic infections. J Clin Microbiol (2001) 1.73
High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes. Proc Biol Sci (2001) 1.69
Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin. Appl Environ Microbiol (2002) 1.67
Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean. Appl Environ Microbiol (2002) 1.66
Species abundance and diversity of Burkholderia cepacia complex in the environment. Appl Environ Microbiol (2005) 1.62
Links between phytoplankton and bacterial community dynamics in a coastal marine environment. Microb Ecol (2005) 1.59
Prevalence of tetracycline resistance genes in oral bacteria. Antimicrob Agents Chemother (2003) 1.59
Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field. Extremophiles (2004) 1.58
Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol (2003) 1.56
A newly discovered bacterium associated with parthenogenesis and a change in host selection behavior in parasitoid wasps. Proc Natl Acad Sci U S A (2001) 1.55
New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. Appl Environ Microbiol (2002) 1.52
Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales. Nucleic Acids Res (2001) 1.52
Isolation and characterization of metal-reducing thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado. Appl Environ Microbiol (2002) 1.52
Bacterial diversity in three different Antarctic Cold Desert mineral soils. Microb Ecol (2006) 1.49
The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium. Environ Microbiol (2012) 1.44
Microbial diversity of the brine-seawater interface of the Kebrit Deep, Red Sea, studied via 16S rRNA gene sequences and cultivation methods. Appl Environ Microbiol (2001) 1.43
Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico. Appl Environ Microbiol (2003) 1.43
Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton. Appl Environ Microbiol (2005) 1.42
Structure and membrane affinity of a suite of amphiphilic siderophores produced by a marine bacterium. Proc Natl Acad Sci U S A (2003) 1.41
Phylogenetic analysis of anaerobic psychrophilic enrichment cultures obtained from a greenland glacier ice core. Appl Environ Microbiol (2003) 1.40
Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil. Appl Environ Microbiol (2005) 1.35
Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania basin, Mediterranean Sea). Appl Environ Microbiol (2001) 1.32
Characterization of Trichodesmium spp. by genetic techniques. Appl Environ Microbiol (2002) 1.32
Changes in populations of rhizosphere bacteria associated with take-all disease of wheat. Appl Environ Microbiol (2001) 1.31
Phylogenetic diversity analysis of subterranean hot springs in Iceland. Appl Environ Microbiol (2001) 1.30
16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl Environ Microbiol (2001) 1.28
Natural communities of novel archaea and bacteria growing in cold sulfurous springs with a string-of-pearls-like morphology. Appl Environ Microbiol (2001) 1.23
Composition of the vaginal microbiota in women of reproductive age--sensitive and specific molecular diagnosis of bacterial vaginosis is possible? PLoS One (2013) 1.21
Ammonia- and nitrite-oxidizing bacterial communities in a pilot-scale chloraminated drinking water distribution system. Appl Environ Microbiol (2002) 1.21
Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism. Appl Environ Microbiol (2005) 1.21
Stability and change in estuarine biofilm bacterial community diversity. Appl Environ Microbiol (2006) 1.21
Characterization of microbial communities in gas industry pipelines. Appl Environ Microbiol (2003) 1.20
Communities of archaea and bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps, and evidence of ammonia-oxidizing Crenarchaeota. Appl Environ Microbiol (2006) 1.20
Transfer of TN916-like elements in microcosm dental plaques. Antimicrob Agents Chemother (2001) 1.19
Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants. Appl Environ Microbiol (2005) 1.17
Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration. Appl Environ Microbiol (2002) 1.16
Bacterial communities from shoreline environments (costa da morte, northwestern Spain) affected by the prestige oil spill. Appl Environ Microbiol (2009) 1.16
Sequence analysis of a 101-kilobase plasmid required for agar degradation by a Microscilla isolate. Appl Environ Microbiol (2001) 1.15
Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plants. Appl Environ Microbiol (2001) 1.14
Evidence that the Campylobacter fetus sap locus is an ancient genomic constituent with origins before mammals and reptiles diverged. Infect Immun (2001) 1.14
Numerical dominance and phylotype diversity of marine Rhodobacter species during early colonization of submerged surfaces in coastal marine waters as determined by 16S ribosomal DNA sequence analysis and fluorescence in situ hybridization. Appl Environ Microbiol (2002) 1.13
Phylogenetic analysis of bacterial and archaeal arsC gene sequences suggests an ancient, common origin for arsenate reductase. BMC Evol Biol (2003) 1.12
Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems. Appl Environ Microbiol (2004) 1.12
Novelty and spatio-temporal heterogeneity in the bacterial diversity of hypersaline Lake Tebenquiche (Salar de Atacama). Extremophiles (2008) 1.11
Identification of a bacterium that specifically catalyzes the reductive dechlorination of polychlorinated biphenyls with doubly flanked chlorines. Appl Environ Microbiol (2002) 1.09
Kinetics of perchlorate- and chlorate-respiring bacteria. Appl Environ Microbiol (2001) 1.08
Isolation and metabolic characteristics of previously uncultured members of the order aquificales in a subsurface gold mine. Appl Environ Microbiol (2002) 1.08
Family- and genus-level 16S rRNA-targeted oligonucleotide probes for ecological studies of methanotrophic bacteria. Appl Environ Microbiol (2001) 1.05
Dynamics of Legionella spp. and bacterial populations during the proliferation of L. pneumophila in a cooling tower facility. Appl Environ Microbiol (2008) 1.05
Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol. Appl Environ Microbiol (2000) 1.05
Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov. Appl Environ Microbiol (2002) 1.03
Molecular evidence for association of chlamydiales bacteria with epitheliocystis in leafy seadragon (Phycodurus eques), silver perch (Bidyanus bidyanus), and barramundi (Lates calcarifer). Appl Environ Microbiol (2006) 1.03
Utilization of tmRNA sequences for bacterial identification. BMC Microbiol (2001) 1.03
Effect of amoxicillin use on oral microbiota in young children. Antimicrob Agents Chemother (2004) 1.02
Analysis of the endophytic actinobacterial population in the roots of wheat (Triticum aestivum L.) by terminal restriction fragment length polymorphism and sequencing of 16S rRNA clones. Appl Environ Microbiol (2004) 1.02
Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel thermophilic member of the Geobacteraceae from the "Bag City" hydrothermal vent. Appl Environ Microbiol (2003) 1.00
Exploring internal features of 16S rRNA gene for identification of clinically relevant species of the genus Streptococcus. Ann Clin Microbiol Antimicrob (2011) 1.00
ICB database: the gyrB database for identification and classification of bacteria. Nucleic Acids Res (2001) 0.99
Composition and diversity of microbial communities recovered from surrogate minerals incubated in an acidic uranium-contaminated aquifer. Appl Environ Microbiol (2004) 0.98
Characterization of bacterial communities associated with organic aggregates in a large, shallow, eutrophic freshwater lake (Lake Taihu, China). Microb Ecol (2009) 0.96
Molecular diet analysis of phyllosoma larvae of the Japanese spiny lobster Panulirus japonicus (Decapoda: Crustacea). Mar Biotechnol (NY) (2007) 0.94
Biological filtration limits carbon availability and affects downstream biofilm formation and community structure. Appl Environ Microbiol (2006) 0.94
Molecular characterization of nitrogen-fixing bacteria isolated from brazilian agricultural plants at São Paulo state. Braz J Microbiol (2008) 0.93
Detection and isolation of ultrasmall microorganisms from a 120,000-year-old Greenland glacier ice core. Appl Environ Microbiol (2005) 0.93
Biochemical characterization of a beta-galactosidase with a low temperature optimum obtained from an Antarctic arthrobacter isolate. J Bacteriol (2003) 0.93
Coexistence of two distinct copies of naphthalene degradation genes in Pseudomonas strains isolated from the western Mediterranean region. Appl Environ Microbiol (2002) 0.92
Impact of UV radiation on bacterioplankton community composition. Appl Environ Microbiol (2001) 0.92
Atypical 16S rRNA gene copies in Ochrobactrum intermedium strains reveal a large genomic rearrangement by recombination between rrn copies. J Bacteriol (2003) 0.89
Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol (1981) 67.56
fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci (1994) 24.63
A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res (1999) 13.25
DNA Data Bank of Japan dealing with large-scale data submission. Nucleic Acids Res (1999) 10.26
Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994. Nucleic Acids Res (1994) 6.71
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res (2008) 52.43
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science (1996) 41.35
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci U S A (1985) 37.69
The RDP-II (Ribosomal Database Project). Nucleic Acids Res (2001) 27.07
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res (2005) 24.85
Microbial ecology and evolution: a ribosomal RNA approach. Annu Rev Microbiol (1986) 22.39
Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J Bacteriol (1988) 21.38
Bone marrow cells regenerate infarcted myocardium. Nature (2001) 21.24
The Ribosomal Database Project. Nucleic Acids Res (1994) 20.01
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res (2003) 18.64
The ribosomal database project. Nucleic Acids Res (1993) 17.20
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res (2006) 16.26
The agent of bacillary angiomatosis. An approach to the identification of uncultured pathogens. N Engl J Med (1990) 15.92
Inhibition of vascular endothelial growth factor-induced angiogenesis suppresses tumour growth in vivo. Nature (1993) 15.70
DNA recovery from soils of diverse composition. Appl Environ Microbiol (1996) 15.02
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature (1997) 14.38
A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res (1999) 13.25
The RDP (Ribosomal Database Project). Nucleic Acids Res (1997) 12.94
CRITICA: coding region identification tool invoking comparative analysis. Mol Biol Evol (1999) 12.64
Identification of the uncultured bacillus of Whipple's disease. N Engl J Med (1992) 12.33
High mutation frequencies among Escherichia coli and Salmonella pathogens. Science (1996) 10.88
Experimental annotation of the human genome using microarray technology. Nature (2001) 10.39
rrndb: the Ribosomal RNA Operon Copy Number Database. Nucleic Acids Res (2001) 9.36
The Ribosomal Database Project (RDP). Nucleic Acids Res (1996) 8.86
Mitochondrial origins. Proc Natl Acad Sci U S A (1985) 8.82
rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol (2000) 8.80
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature (1998) 7.77
Genomics. Genome project standards in a new era of sequencing. Science (2009) 7.72
Isolation and partial characterization of bacteria in an anaerobic consortium that mineralizes 3-chlorobenzoic Acid. Appl Environ Microbiol (1984) 7.67
Analysis of hydrothermal vent-associated symbionts by ribosomal RNA sequences. Science (1984) 7.06
Dehalogenation: a novel pathway for the anaerobic biodegradation of haloaromatic compounds. Science (1982) 6.79
Anaerobic biodegradation of phenolic compounds in digested sludge. Appl Environ Microbiol (1983) 6.68
Phylogenetic analysis using ribosomal RNA. Methods Enzymol (1988) 6.21
Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences. Appl Environ Microbiol (1985) 6.06
Evolutionary relationships among cyanobacteria and green chloroplasts. J Bacteriol (1988) 5.99
Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Appl Environ Microbiol (1990) 5.98
Improved microtechnique for the leptospiral microscopic agglutination test. Appl Microbiol (1973) 5.91
Mad2-Independent inhibition of APCCdc20 by the mitotic checkpoint protein BubR1. Dev Cell (2001) 5.82
The vascular endothelial growth factor family: identification of a fourth molecular species and characterization of alternative splicing of RNA. Mol Endocrinol (1991) 5.61
Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiol Mol Biol Rev (2000) 5.44
Numerically dominant denitrifying bacteria from world soils. Appl Environ Microbiol (1977) 5.25
High resolution mapping of the binding site on human IgG1 for Fc gamma RI, Fc gamma RII, Fc gamma RIII, and FcRn and design of IgG1 variants with improved binding to the Fc gamma R. J Biol Chem (2000) 5.18
Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl Environ Microbiol (2000) 5.11
Carbon and electron flow in mud and sandflat intertidal sediments at delaware inlet, nelson, new zealand. Appl Environ Microbiol (1980) 4.84
Kinetic parameters of the conversion of methane precursors to methane in a hypereutrophic lake sediment. Appl Environ Microbiol (1978) 4.83
Molecular phylogeny of the animal kingdom. Science (1988) 4.76
Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov. Int J Syst Bacteriol (1995) 4.72
Denitrification: ecological niches, competition and survival. Antonie Van Leeuwenhoek (1982) 4.57
Evolutionary relationships among sulfur- and iron-oxidizing eubacteria. J Bacteriol (1992) 4.43
The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme. Cell (1988) 4.41
Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences. J Bacteriol (1988) 4.35
Archaebacterial phylogeny: perspectives on the urkingdoms. Syst Appl Microbiol (1986) 4.10
Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology (1997) 4.09
The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata. Mol Biol Evol (1985) 3.95
General method for determining anaerobic biodegradation potential. Appl Environ Microbiol (1984) 3.91
Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria. J Bacteriol (1996) 3.89
Informed consent for clinical trials: a comparative study of standard versus simplified forms. J Natl Cancer Inst (1998) 3.89
Kinetic explanation for accumulation of nitrite, nitric oxide, and nitrous oxide during bacterial denitrification. Appl Environ Microbiol (1981) 3.88
Reductive dechlorination of polychlorinated biphenyls by anaerobic microorganisms from sediments. Science (1988) 3.87
Chance and consensus in peer review. Science (1981) 3.77
Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning. Appl Environ Microbiol (2001) 3.76
Reductive dehalogenations of halobenzoates by anaerobic lake sediment microorganisms. Appl Environ Microbiol (1983) 3.72
The correlation between cotransplantation of mesenchymal stem cells and higher recurrence rate in hematologic malignancy patients: outcome of a pilot clinical study. Leukemia (2008) 3.69
Kinetics of hydrogen consumption by rumen fluid, anaerobic digestor sludge, and sediment. Appl Environ Microbiol (1982) 3.69
Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition. Appl Environ Microbiol (1998) 3.67
Microbial reductive dehalogenation. Microbiol Rev (1992) 3.63
Excessive CpG island hypermethylation in cancer cell lines versus primary human malignancies. Hum Mol Genet (2001) 3.58
Nitrous oxide from soil denitrification: factors controlling its biological production. Science (1980) 3.57
A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl Environ Microbiol (1996) 3.53
Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl Environ Microbiol (2001) 3.36
Two cellular proteins that bind to wild-type but not mutant p53. Proc Natl Acad Sci U S A (1994) 3.30
Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA. Int J Syst Bacteriol (1991) 3.30
A phylogenetic analysis of Aquifex pyrophilus. Syst Appl Microbiol (1992) 3.26
Ca2+/calmodulin binds to and modulates P/Q-type calcium channels. Nature (1999) 3.24
Sequence of the 16S rRNA gene from the thermoacidophilic archaebacterium Sulfolobus solfataricus and its evolutionary implications. J Mol Evol (1985) 3.20
Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. J Bacteriol (1987) 3.17