Published in Biotechniques on September 01, 2000
The transcriptional activity of human Chromosome 22. Genes Dev (2003) 6.82
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. Proc Natl Acad Sci U S A (2002) 5.28
Within the fold: assessing differential expression measures and reproducibility in microarray assays. Genome Biol (2002) 4.67
Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies. Genome Res (2007) 4.59
Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range. Proc Natl Acad Sci U S A (2002) 4.44
The enduring hypoxic response of Mycobacterium tuberculosis. PLoS One (2008) 3.87
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol (2004) 3.72
Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes. J Bacteriol (2002) 3.35
Microarray results: how accurate are they? BMC Bioinformatics (2002) 3.23
Immune signaling pathways regulating bacterial and malaria parasite infection of the mosquito Anopheles gambiae. Proc Natl Acad Sci U S A (2005) 2.81
Pheromone-mediated gene expression in the honey bee brain. Proc Natl Acad Sci U S A (2003) 2.53
Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies. BMC Genomics (2005) 2.34
Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis. J Bacteriol (2004) 2.23
Gene expression profiling of clear cell renal cell carcinoma: gene identification and prognostic classification. Proc Natl Acad Sci U S A (2001) 2.22
Human cytomegalovirus gene expression during infection of primary hematopoietic progenitor cells: a model for latency. Proc Natl Acad Sci U S A (2002) 2.15
Initiating oncogenic event determines gene-expression patterns of human breast cancer models. Proc Natl Acad Sci U S A (2002) 2.15
Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress. Appl Environ Microbiol (2002) 2.14
Multi-platform, multi-site, microarray-based human tumor classification. Am J Pathol (2004) 2.14
Database of mRNA gene expression profiles of multiple human organs. Genome Res (2005) 2.11
Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray. BMC Genomics (2004) 1.98
Prediction of clinical outcome using gene expression profiling and artificial neural networks for patients with neuroblastoma. Cancer Res (2004) 1.96
Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays. Genome Biol (2003) 1.94
Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression. Nucleic Acids Res (2004) 1.87
Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program. Appl Environ Microbiol (2003) 1.76
Chromosome transfer induced aneuploidy results in complex dysregulation of the cellular transcriptome in immortalized and cancer cells. Cancer Res (2004) 1.74
Transcriptional profiling of the LPS induced NF-kappaB response in macrophages. BMC Immunol (2007) 1.71
Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of eucalyptus. Plant Physiol (2004) 1.66
Mixed-genome microarrays reveal multiple serotype and lineage-specific differences among strains of Listeria monocytogenes. J Clin Microbiol (2003) 1.65
Retracted The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli. Plant Cell (2002) 1.61
yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes. Plant Physiol (2007) 1.57
Microarray optimizations: increasing spot accuracy and automated identification of true microarray signals. Nucleic Acids Res (2002) 1.54
Analysis of microarray experiments of gene expression profiling. Am J Obstet Gynecol (2006) 1.53
Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus. Appl Environ Microbiol (2003) 1.52
Identifying antimicrobial resistance genes with DNA microarrays. Antimicrob Agents Chemother (2003) 1.50
Global analysis of carbohydrate utilization by Lactobacillus acidophilus using cDNA microarrays. Proc Natl Acad Sci U S A (2006) 1.50
Phenotypic and transcriptomic changes associated with potato autopolyploidization. Genetics (2007) 1.49
Unique flexibility in energy metabolism allows mycobacteria to combat starvation and hypoxia. PLoS One (2010) 1.49
Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean. Plant Physiol (2003) 1.48
Processing the loblolly pine PtGen2 cDNA microarray. J Vis Exp (2009) 1.47
A segmental nearest neighbor normalization and gene identification method gives superior results for DNA-array analysis. Proc Natl Acad Sci U S A (2003) 1.46
RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits. Mol Cell Biol (2004) 1.46
DNA array-based transcriptional analysis of asporogenous, nonsolventogenic Clostridium acetobutylicum strains SKO1 and M5. J Bacteriol (2003) 1.44
The frequency gene is required for temperature-dependent regulation of many clock-controlled genes in Neurospora crassa. Genetics (2003) 1.42
Extracting gene networks for low-dose radiation using graph theoretical algorithms. PLoS Comput Biol (2006) 1.41
Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid. Genetics (2005) 1.38
Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant. BMC Genomics (2004) 1.36
Diverged binding specificity of Rim101p, the Candida albicans ortholog of PacC. Eukaryot Cell (2003) 1.35
The gene expression signature of genomic instability in breast cancer is an independent predictor of clinical outcome. Int J Cancer (2009) 1.34
Aberrant histone acetylation, altered transcription, and retinal degeneration in a Drosophila model of polyglutamine disease are rescued by CREB-binding protein. Genes Dev (2003) 1.33
Population fitness and the regulation of Escherichia coli genes by bacterial viruses. PLoS Biol (2005) 1.32
An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima. J Bacteriol (2005) 1.32
Identification of genes involved in resistance to interferon-alpha in cutaneous T-cell lymphoma. Am J Pathol (2002) 1.29
Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media. Mol Cell Biol (2005) 1.28
Divergent responses of chondrocytes and endothelial cells to shear stress: cross-talk among COX-2, the phase 2 response, and apoptosis. Proc Natl Acad Sci U S A (2005) 1.28
Fusarium graminearum-induced changes in gene expression between Fusarium head blight-resistant and susceptible wheat cultivars. Funct Integr Genomics (2006) 1.28
Characterization of a Clp protease gene regulator and the reaeration response in Mycobacterium tuberculosis. PLoS One (2010) 1.28
Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. Proc Natl Acad Sci U S A (2005) 1.27
DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substrates. Mol Genet Genomics (2005) 1.26
Dendrimeric coating of glass slides for sensitive DNA microarrays analysis. Nucleic Acids Res (2003) 1.25
Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility. Nucleic Acids Res (2003) 1.25
Robust and efficient synthetic method for forming DNA microarrays. Nucleic Acids Res (2001) 1.25
Unique aspects of gene expression during Candida albicans mating and possible G(1) dependency. Eukaryot Cell (2005) 1.24
fslE is necessary for siderophore-mediated iron acquisition in Francisella tularensis Schu S4. J Bacteriol (2008) 1.24
Gene expression profiling of potato responses to cold, heat, and salt stress. Funct Integr Genomics (2005) 1.23
Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins. BMC Genomics (2007) 1.23
The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biol J Linn Soc Lond (2004) 1.22
RNA-seq and microarray complement each other in transcriptome profiling. BMC Genomics (2012) 1.22
Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH. J Bacteriol (2006) 1.22
The effects of polyethylene glycol on gene expression of developing white spruce somatic embryos. Plant Physiol (2003) 1.21
Ovarian gene expression in the absence of FIGLA, an oocyte-specific transcription factor. BMC Dev Biol (2007) 1.21
Microarray analysis reveals differential gene expression in hybrid sunflower species. Mol Ecol (2006) 1.19
Human cytomegalovirus TRS1 protein is required for efficient assembly of DNA-containing capsids. J Virol (2004) 1.19
Three color cDNA microarrays: quantitative assessment through the use of fluorescein-labeled probes. Nucleic Acids Res (2003) 1.18
Antisense RNA downregulation of coenzyme A transferase combined with alcohol-aldehyde dehydrogenase overexpression leads to predominantly alcohologenic Clostridium acetobutylicum fermentations. J Bacteriol (2003) 1.17
Expression profiling on soybean leaves reveals integration of ER- and osmotic-stress pathways. BMC Genomics (2007) 1.17
Identification and gene expression analysis of a large family of transmembrane kinases related to the Gal/GalNAc lectin in Entamoeba histolytica. Eukaryot Cell (2005) 1.17
Molecular processes during fat cell development revealed by gene expression profiling and functional annotation. Genome Biol (2005) 1.16
Differential transcriptional response to nonassociative and associative components of classical fear conditioning in the amygdala and hippocampus. Learn Mem (2006) 1.14
Global changes in cellular gene expression during bacteriophage PRD1 infection. J Virol (2006) 1.13
The OxyR regulon in nontypeable Haemophilus influenzae. J Bacteriol (2006) 1.13
African swine fever virus multigene family 360 and 530 genes affect host interferon response. J Virol (2004) 1.13
Identification of candidate genes associated with cell wall digestibility and eQTL (expression quantitative trait loci) analysis in a Flint x Flint maize recombinant inbred line population. BMC Genomics (2007) 1.13
Rare earth-doped glass microbarcodes. Proc Natl Acad Sci U S A (2003) 1.12
Transcriptome analysis of recombinant protein secretion by Aspergillus nidulans and the unfolded-protein response in vivo. Appl Environ Microbiol (2005) 1.11
Optimizing spotting solutions for increased reproducibility of cDNA microarrays. Nucleic Acids Res (2003) 1.11
Analysis of light and CO(2) regulation in Chlamydomonas reinhardtii using genome-wide approaches. Photosynth Res (2003) 1.09
Major differences observed in transcript profiles of blueberry during cold acclimation under field and cold room conditions. Planta (2006) 1.07
A robust method for the amplification of RNA in the sense orientation. BMC Genomics (2005) 1.07
Salmonella enterica serovar Typhimurium requires the Lpf, Pef, and Tafi fimbriae for biofilm formation on HEp-2 tissue culture cells and chicken intestinal epithelium. Infect Immun (2006) 1.07
Flux of transcript patterns during soybean seed development. BMC Genomics (2010) 1.06
Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth. J Bacteriol (2009) 1.06
Differential expression of genes within the cochlea as defined by a custom mouse inner ear microarray. J Assoc Res Otolaryngol (2005) 1.06
Gene expression analysis on small numbers of invasive cells collected by chemotaxis from primary mammary tumors of the mouse. BMC Biotechnol (2003) 1.05
Impact of surface chemistry and blocking strategies on DNA microarrays. Nucleic Acids Res (2003) 1.04
VirA and VirG activate the Ti plasmid repABC operon, elevating plasmid copy number in response to wound-released chemical signals. Proc Natl Acad Sci U S A (2005) 1.04
Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays. Nucleic Acids Res (2003) 1.04
Comparative analysis of differentially expressed genes in Shewanella oneidensis MR-1 following exposure to UVC, UVB, and UVA radiation. J Bacteriol (2005) 1.03
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet (2001) 63.36
TM4: a free, open-source system for microarray data management and analysis. Biotechniques (2003) 38.02
The transcriptional landscape of the mammalian genome. Science (2005) 37.63
The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature (1997) 34.00
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature (2002) 28.79
Functional annotation of a full-length mouse cDNA collection. Nature (2001) 23.61
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature (1997) 19.08
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature (1997) 14.38
A gene map of the human genome. Science (1996) 14.32
Positive control of enzyme synthesis by gene C in the L-arabinose system. J Bacteriol (1965) 6.59
Gene index analysis of the human genome estimates approximately 120,000 genes. Nat Genet (2000) 6.09
Alcohol, tobacco and breast cancer--collaborative reanalysis of individual data from 53 epidemiological studies, including 58,515 women with breast cancer and 95,067 women without the disease. Br J Cancer (2002) 5.83
An optimized protocol for analysis of EST sequences. Nucleic Acids Res (2000) 4.80
RESOURCERER: a database for annotating and linking microarray resources within and across species. Genome Biol (2001) 4.79
Burkholderia cepacia: medical, taxonomic and ecological issues. J Med Microbiol (1996) 4.11
An STS-based radiation hybrid map of the human genome. Genome Res (1997) 3.57
Whole-genome shotgun optical mapping of Deinococcus radiodurans. Science (1999) 3.56
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. Nucleic Acids Res (2005) 3.53
ABC of medical computing. The Internet. BMJ (1995) 3.47
Enrichment of gene-coding sequences in maize by genome filtration. Science (2003) 3.41
Changes in antimicrobial resistance among Salmonella enterica Serovar typhimurium isolates from humans and cattle in the Northwestern United States, 1982-1997. Emerg Infect Dis (2000) 3.32
Improved version 2.0 qualitative and quantitative AMPLICOR reverse transcription-PCR tests for hepatitis C virus RNA: calibration to international units, enhanced genotype reactivity, and performance characteristics. J Clin Microbiol (2000) 2.70
Lipoprotein from the outer membrane of Escherichia coli: purification, paracrystallization, and some properties of its free form. J Bacteriol (1976) 2.52
Sphingosine 1-phosphate, a bioactive sphingolipid abundantly stored in platelets, is a normal constituent of human plasma and serum. J Biochem (1997) 2.51
Shotgun optical maps of the whole Escherichia coli O157:H7 genome. Genome Res (2001) 2.43
Association of genetic variation in FTO with risk of obesity and type 2 diabetes with data from 96,551 East and South Asians. Diabetologia (2011) 2.37
Predicted impact of extending the screening interval for diabetic retinopathy: the Scottish Diabetic Retinopathy Screening programme. Diabetologia (2013) 2.31
Early events in RNA folding. Annu Rev Phys Chem (2001) 2.29
A nucleotide substitution in the promoter of human angiotensinogen is associated with essential hypertension and affects basal transcription in vitro. J Clin Invest (1997) 2.23
The Amsler chart is of doubtful value in retinal screening for early laser therapy of subretinal membranes. The West London Survey. Eye (Lond) (2004) 2.23
Development of a species-specific PCR assay for detection of Leishmania donovani in clinical samples from patients with kala-azar and post-kala-azar dermal leishmaniasis. J Clin Microbiol (2001) 2.23
Electric-field-induced capillary attraction between like-charged particles at liquid interfaces. Nature (2002) 2.21
The organization of the araBAD operon of Escherichia coli. Gene (1986) 2.16
The araC gene of Escherichia coli: transcriptional and translational start-points and complete nucleotide sequence. Gene (1980) 2.11
Cryptococcosis in apparently immunocompetent patients. QJM (2006) 2.09
Direction of transcription of the regulatory gene araC in Escherichia coli B-r. Proc Natl Acad Sci U S A (1974) 2.05
Circumcision and breastfeeding. J Hum Lact (2000) 2.01
The Shatin community mental health survey in Hong Kong. II. Major findings. Arch Gen Psychiatry (1993) 1.99
ABC of medical computing. Computers in general practice--II. BMJ (1995) 1.97
The ldhA gene encoding the fermentative lactate dehydrogenase of Escherichia coli. Microbiology (1997) 1.96
Organ-specific molecular classification of primary lung, colon, and ovarian adenocarcinomas using gene expression profiles. Am J Pathol (2001) 1.95
The E5 oncoprotein of bovine papillomavirus is oriented asymmetrically in Golgi and plasma membranes. Virology (1989) 1.93
In vitro activation of the transcription of araBAD operon by araC activator. Proc Natl Acad Sci U S A (1974) 1.91
Recreational MDMA use in Sydney: a profile of 'Ecstacy' users and their experiences with the drug. Br J Addict (1992) 1.87
Purification and properties of an L-arabinose isomerase from Escherichia coli. J Biol Chem (1968) 1.86
Force response of a viscous liquid in a probe-tack geometry: fingering versus cavitation. Eur Phys J E Soft Matter (2004) 1.85
Molecular cloning of Rhizobium trifolii genes involved in symbiotic nitrogen fixation. J Mol Appl Genet (1982) 1.84
Burkholderia cepacia and cystic fibrosis: do natural environments present a potential hazard? J Clin Microbiol (1995) 1.79
Effects of admission hyperglycemia on mortality and costs in acute ischemic stroke. Neurology (2002) 1.79
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. MBio (2011) 1.76
Proteins of Mycobacterium bovis BCG induced in the Wayne dormancy model. J Bacteriol (2001) 1.72
Effects of ischemia on gene expression. J Surg Res (2001) 1.71
Outer membrane proteins of Escherichia coli: biosynthesis and assembly. FEBS Lett (1974) 1.70
Nucleotide sequence of the 5' end of araBAD operon messenger RNA in Escherichia coli B/r. Proc Natl Acad Sci U S A (1977) 1.69
Do associations between staff and inpatient feedback have the potential for improving patient experience? An analysis of surveys in NHS acute trusts in England. Qual Saf Health Care (2009) 1.67
Highly efficient production and characterization of T-DNA plants for rice ( Oryza sativa L.) functional genomics. Theor Appl Genet (2003) 1.66
The diagnosis and treatment of cerebral mycotic aneurysms. Ann Neurol (1990) 1.64
Search for supersymmetry using final states with one lepton, jets, and missing transverse momentum with the ATLAS detector in √s=7 TeV pp collisions. Phys Rev Lett (2011) 1.60
HLA-E-bound peptides influence recognition by inhibitory and triggering CD94/NKG2 receptors: preferential response to an HLA-G-derived nonamer. Eur J Immunol (1998) 1.60
Exploring the transcriptome of the malaria sporozoite stage. Proc Natl Acad Sci U S A (2001) 1.59
Clinical correlates of antifungal macrodilution susceptibility test results for non-AIDS patients with severe Candida infections treated with fluconazole. Antimicrob Agents Chemother (2000) 1.57
Amino acid replacement in a mutant lipoprotein of the Escherichia coli outer membrane. J Bacteriol (1977) 1.51
Sequence analysis of a rainbow trout cDNA library and creation of a gene index. Cytogenet Genome Res (2003) 1.46
Effects of hormone replacement therapy on cardiovascular risk factors in postmenopausal women. Fertil Steril (1998) 1.46
Treatment of neoplastic spinal cord compression: results of a prospective study. Neurosurgery (1991) 1.45
Disruption of PF4/H multimolecular complex formation with a minimally anticoagulant heparin (ODSH). Thromb Haemost (2012) 1.45
Tetracycline compound placement to prevent dry socket: a postoperative study of 200 impacted mandibular third molars. J Oral Maxillofac Surg (2004) 1.44
Typhlitis in patients with HIV-1 infection. Ann Intern Med (1992) 1.44
Crystalline L-ribulokinase from Escherichia coli. J Biol Chem (1967) 1.44
Golgi retention of a trans-Golgi membrane protein, galactosyltransferase, requires cysteine and histidine residues within the membrane-anchoring domain. Proc Natl Acad Sci U S A (1992) 1.43
Subunit structure of L-arabinose isomerase from Escherichia coli. J Biol Chem (1969) 1.42
Human liver apolipoprotein B-100 cDNA: complete nucleic acid and derived amino acid sequence. Proc Natl Acad Sci U S A (1986) 1.42
Observation of a centrality-dependent dijet asymmetry in lead-lead collisions at sqrt[S(NN)] =2.76 TeV with the ATLAS detector at the LHC. Phys Rev Lett (2010) 1.41
Small-cell carcinoma of the cervix: fourteen years of experience at a single institution using a combined-modality regimen of involved-field irradiation and platinum-based combination chemotherapy. J Clin Oncol (2003) 1.41
Viva la revolution! A report from the FANTOM meeting. Nat Genet (2000) 1.41
Observation of B(0)(s)-->Psi(2S)Phi and measurement of the ratio of branching fractions Beta(B(0)(s)-->Psi(2S)Phi)/Beta(B(0)(s)-->J/PsiPhi). Phys Rev Lett (2006) 1.40
Identification of tumor markers in models of human colorectal cancer using a 19,200-element complementary DNA microarray. Cancer Res (2001) 1.40
Pulmonary pathological features in coronavirus associated severe acute respiratory syndrome (SARS). J Clin Pathol (2004) 1.39
Feral cats. J Am Vet Med Assoc (1993) 1.39
Measurement of dijet azimuthal decorrelations in pp collisions at sqrt(s)=7 TeV. Phys Rev Lett (2011) 1.39
Pseudomonas pseudomallei infection from drowning: the first reported case in Taiwan. J Clin Microbiol (1985) 1.39
Signaling via cAMP in fungi: interconnections with mitogen-activated protein kinase pathways. Arch Microbiol (1998) 1.38
Dynamic programming generation of boundaries of local coordinatized submanifolds in the neocortex: application to the planum temporale. Neuroimage (2003) 1.37
Paclitaxel and carboplatin, alone or with irradiation, in advanced or recurrent endometrial cancer: a phase II study. J Clin Oncol (2001) 1.36
An analysis of some risk factors for lung cancer in Hong Kong. Int J Cancer (1985) 1.35
Determination of the strange-quark density of the proton from ATLAS measurements of the W→ℓν and Z→ℓℓ cross sections. Phys Rev Lett (2012) 1.34
Chlamydial infections of the urethra in women. Genitourin Med (1985) 1.33
Search for new particles in two-jet final states in 7 TeV proton-proton collisions with the ATLAS detector at the LHC. Phys Rev Lett (2010) 1.32
A membrane protein enriched in endoplasmic reticulum exit sites interacts with COPII. J Biol Chem (2001) 1.30
Observation of associated near-side and away-side long-range correlations in sqrt[s(NN)]=5.02 TeV proton-lead collisions with the ATLAS detector. Phys Rev Lett (2013) 1.27
Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Genome Res (2001) 1.26
Persistence of chlamydial infection after treatment for neonatal conjunctivitis. Arch Dis Child (1981) 1.26
Three binding sites for AraC protein are required for autoregulation of araC in Escherichia coli. Proc Natl Acad Sci U S A (1988) 1.26