The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop.

PubWeight™: 1.11‹?› | Rank: Top 10%

🔗 View Article (PMC 1370007)

Published in RNA on October 01, 2000

Authors

P Bénas1, G Bec, G Keith, R Marquet, C Ehresmann, B Ehresmann, P Dumas

Author Affiliations

1: Unité Propre de Recherche 9002 du Centre National de la Recherche Scientifique, Institut de Biologie Moléculaire et Cellulaire, Strasbourg, France.

Articles citing this

Decoding the genome: a modified view. Nucleic Acids Res (2004) 2.90

Post-transcriptional nucleotide modification and alternative folding of RNA. Nucleic Acids Res (2006) 2.34

Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism. J Mol Biol (2011) 1.82

Identification of modifications in microbial, native tRNA that suppress immunostimulatory activity. J Exp Med (2012) 1.57

Predicting helical coaxial stacking in RNA multibranch loops. RNA (2007) 1.40

The crystal structure of unmodified tRNAPhe from Escherichia coli. Nucleic Acids Res (2010) 1.22

A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis. Nucleic Acids Res (2008) 1.08

Influence of the stacking potential of the base 3' of tandem shift codons on -1 ribosomal frameshifting used for gene expression. RNA (2002) 1.08

Vif is a RNA chaperone that could temporally regulate RNA dimerization and the early steps of HIV-1 reverse transcription. Nucleic Acids Res (2007) 1.07

Structural and functional properties of the HIV-1 RNA-tRNA(Lys)3 primer complex annealed by the nucleocapsid protein: comparison with the heat-annealed complex. RNA (2002) 0.99

The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif. Nucleic Acids Res (2006) 0.94

Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition. Nucleic Acids Res (2006) 0.91

Small-angle X-ray scattering-derived structure of the HIV-1 5' UTR reveals 3D tRNA mimicry. Proc Natl Acad Sci U S A (2014) 0.91

Initiation of HIV Reverse Transcription. Viruses (2010) 0.85

Does the HIV-1 primer activation signal interact with tRNA3(Lys) during the initiation of reverse transcription? Nucleic Acids Res (2003) 0.85

Structure-function relationships of the initiation complex of HIV-1 reverse transcription: the case of mutant viruses using tRNA(His) as primer. Nucleic Acids Res (2003) 0.80

Assembly, purification and crystallization of an active HIV-1 reverse transcriptase initiation complex. Nucleic Acids Res (2002) 0.78

tRNA isoacceptor preference prior to retrovirus Gag-Pol junction links primer selection and viral translation. J Virol (2007) 0.78

Simulation study of the ability of a computationally-designed peptide to recognize target tRNA(Lys3) and other decoy tRNAs. Protein Sci (2016) 0.75

Structural effects of modified ribonucleotides and magnesium in transfer RNAs. Bioorg Med Chem (2016) 0.75

Articles cited by this

Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem (1987) 281.19

Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr (1998) 169.28

Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A (1991) 119.63

Complete nucleotide sequence of the AIDS virus, HTLV-III. Nature (1985) 30.62

X-ray crystal structures of 70S ribosome functional complexes. Science (1999) 10.51

Structure of yeast phenylalanine tRNA at 3 A resolution. Nature (1974) 10.27

Crystallographic refinement of yeast aspartic acid transfer RNA. J Mol Biol (1985) 6.33

Structural domains of transfer RNA molecules. Science (1976) 6.07

Detecting and overcoming crystal twinning. Methods Enzymol (1997) 4.35

Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain. Science (1973) 4.31

On the physical basis for ambiguity in genetic coding interactions. Proc Natl Acad Sci U S A (1978) 3.71

Nucleotide sequence of three isoaccepting lysine tRNAs from rabbit liver and SV40-transformed mouse fibroblasts. Eur J Biochem (1979) 3.59

Crystallographic refinement of yeast phenylalanine transfer RNA at 2-5A resolution. J Mol Biol (1976) 3.25

Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer). J Mol Biol (1995) 3.23

Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. J Biol Chem (1993) 2.95

Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon. Proc Natl Acad Sci U S A (1985) 2.66

Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature (1997) 2.41

tRNAs as primer of reverse transcriptases. Biochimie (1995) 2.37

Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys. EMBO J (1996) 2.24

Single atom modification (O-->S) of tRNA confers ribosome binding. RNA (1999) 1.84

Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNA(Lys) and an AAG lysine codon. Genes Dev (1992) 1.80

Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. J Mol Biol (1999) 1.70

Primary structure of three tRNAs from brewer's yeast: tRNAPro2, tRNAHis1 and tRNAHis2. Biochimie (1984) 1.67

Structural basis for the specificity of the initiation of HIV-1 reverse transcription. EMBO J (1999) 1.59

Purification of tRNATrp, tRNAVal, and partial purification of tRNAIle and tRNAMfet from beef liver. Biochimie (1976) 1.58

Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability. Nucleic Acids Res (1997) 1.42

Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes. J Mol Biol (1999) 1.41

HIV-1 A-rich RNA loop mimics the tRNA anticodon structure. Nat Struct Biol (1998) 1.15

1H NMR studies on the conformational characteristics of 2-thiopyrimidine nucleotides found in transfer RNAs. Nucleic Acids Res (1979) 1.14

Anticodon-anticodon interaction induces conformational changes in tRNA: yeast tRNAAsp, a model for tRNA-mRNA recognition. Proc Natl Acad Sci U S A (1986) 1.11

Unconventional structure of tRNA(Lys)SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1. RNA (1997) 1.08

Structure of a triple helical DNA with a triplex-duplex junction. Biochemistry (1999) 1.08

The ternary complex of EF-Tu and its role in protein biosynthesis. Curr Opin Struct Biol (1997) 1.06

CD and NMR studies on the conformational thermostability of 2-thioribothymidine found in the T psi C loop of thermophile tRNA. Biochem Biophys Res Commun (1979) 1.06

Effect of uridine dethiolation in the anticodon triplet of tRNA(Glu) on its association with tRNA(Phe). J Biomol Struct Dyn (1988) 1.03

Unusual anticodon loop structure found in E.coli lysine tRNA. Nucleic Acids Res (1994) 0.92

Modified nucleosides and conformation of anticodon loops: crystal structure of t6A and g6A. Biochemistry (1977) 0.90

Conformation of N-(purin-6ylcarbamoyl) glycine, a hypermodified base in tRNA. Biochem Biophys Res Commun (1974) 0.78

Detection and treatment of twinning: an improvement and new results. Acta Crystallogr D Biol Crystallogr (1999) 0.78

Articles by these authors

Probing the structure of RNAs in solution. Nucleic Acids Res (1987) 7.62

Crystallographic refinement of yeast aspartic acid transfer RNA. J Mol Biol (1985) 6.33

The complete nucleotide sequence of the ribosomal 16-S RNA from Excherichia coli. Experimental details and cistron heterogeneities. Eur J Biochem (1979) 6.08

Small finger protein of avian and murine retroviruses has nucleic acid annealing activity and positions the replication primer tRNA onto genomic RNA. EMBO J (1988) 5.43

HIV-1 reverse transcriptase specifically interacts with the anticodon domain of its cognate primer tRNA. EMBO J (1989) 4.73

Structure of Sindbis virus core protein reveals a chymotrypsin-like serine proteinase and the organization of the virion. Nature (1991) 4.24

The topography of the 5' end of 16-S RNA in the presence and absence of ribosomal proteins S4 and S20. Eur J Biochem (1980) 4.22

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains. J Mol Biol (1993) 4.08

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro. Proc Natl Acad Sci U S A (1994) 4.07

Evidence for tertiary structural RNA-RNA interactions within the protein S4 binding site at the 5'-end of 16S ribosomal RNA of Escherichia coli.+. Nucleic Acids Res (1975) 3.67

Walking along the rabies genome: is the large G-L intergenic region a remnant gene? Proc Natl Acad Sci U S A (1986) 3.49

The sequence of the ribosomal 16S RNA from Proteus vulgaris. Sequence comparison with E. coli 16S RNA and its use in secondary model building. Nucleic Acids Res (1981) 3.43

The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif. EMBO J (2001) 3.42

A topographical study of the 5'-region of 16 S rna of Escherichia coli in the presence and absence of protein S4. FEBS Lett (1977) 3.31

Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer). J Mol Biol (1995) 3.23

The sequence of Escherichia coli ribosomal 16 S RNA determined by new rapid gel methods. FEBS Lett (1978) 3.19

Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. J Biol Chem (1993) 2.95

Dimerization of human immunodeficiency virus (type 1) RNA: stimulation by cations and possible mechanism. Nucleic Acids Res (1991) 2.94

Measurements of energetic particle radiation in transit to Mars on the Mars Science Laboratory. Science (2013) 2.83

The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site. Cell (1999) 2.74

The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. 2. Nucleotide sequences of products from partial enzymatic hydrolysis. Biochimie (1972) 2.74

Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA. J Biol Chem (1994) 2.71

Primary sequence of the 16S ribosomal RNA of Escherichia coli. Nucleic Acids Res (1975) 2.67

A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits. Eur J Biochem (1981) 2.60

The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. III. Further studies. Biochimie (1975) 2.57

A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA. Proc Natl Acad Sci U S A (1996) 2.56

[Primary structure of transfer RNA]. Biochimie (1972) 2.43

Location of ribosomal protein binding sites on 16S ribosomal RNA. Proc Natl Acad Sci U S A (1972) 2.43

Stenting of bifurcation lesions: classification, treatments, and results. Catheter Cardiovasc Interv (2000) 2.42

The role of exportin-t in selective nuclear export of mature tRNAs. EMBO J (1998) 2.40

tRNAs as primer of reverse transcriptases. Biochimie (1995) 2.37

A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis. J Virol (1996) 2.33

Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure. Nucleic Acids Res (1981) 2.32

The nucleotide sequence of methionine elongator tRNA from wheat germ. Biochem Biophys Res Commun (1983) 2.29

Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys. EMBO J (1996) 2.24

Dimerization of human immunodeficiency virus type 1 RNA involves sequences located upstream of the splice donor site. Nucleic Acids Res (1994) 2.21

Partial nucleotide sequence of 16S ribosomal RNA from E. coli. Nat New Biol (1972) 2.17

Nucleotide sequences present within the 16S ribosomal RNA of Escherichia coli. Nature (1970) 2.15

Location and characteristics of ribosomal protein binding sites in the 16S RNA of Escherichia coli. Nucleic Acids Res (1975) 2.15

Spectrophotometric determination of protein concentration in cell extracts containing tRNA's and rRNA's. Anal Biochem (1973) 2.09

A genomic-systems biology map for cardiovascular function. Science (2001) 2.09

Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals. Acta Crystallogr A (1988) 2.08

Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem. Cell (2000) 2.05

The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site. J Virol (1999) 2.04

Stenting small coronary arteries. J Invasive Cardiol (1999) 2.03

Dimerization of retroviral genomic RNAs: structural and functional implications. Biochimie (1996) 2.03

Completion of the rabies virus genome sequence determination: highly conserved domains among the L (polymerase) proteins of unsegmented negative-strand RNA viruses. Virology (1988) 2.02

Recent progress in the determination of the primary sequence of the 16 S RNA of Escherichia coli. FEBS Lett (1977) 2.01

Brown Norway chromosome 13 confers protection from high salt to consomic Dahl S rat. Hypertension (2001) 1.99

Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea. J Mol Biol (1985) 1.94

Sequence analysis of the 3'-T1 oligonucleotide of 16S ribosomal RNA from Escherichia coli. FEBS Lett (1974) 1.93

Effect of dimerization on the conformation of the encapsidation Psi domain of Moloney murine leukemia virus RNA. J Mol Biol (1992) 1.89

Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site. Nat Struct Biol (2001) 1.86

Non-standard translational events in Candida albicans mediated by an unusual seryl-tRNA with a 5'-CAG-3' (leucine) anticodon. EMBO J (1993) 1.85

Computer modeling from solution data of spinach chloroplast and of Xenopus laevis somatic and oocyte 5 S rRNAs. J Mol Biol (1989) 1.84

An improved method for the separation and quantitation of the modified nucleosides of transfer RNA. Nucleic Acids Res (1976) 1.79

Transferrin-binding proteins isolated from Neisseria meningitidis elicit protective and bactericidal antibodies in laboratory animals. Vaccine (1993) 1.75

[Nucleotide sequence determination of yeast mitochondrial phenylalanine-tRNA]. C R Acad Sci Hebd Seances Acad Sci D (1978) 1.73

[Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli]. C R Seances Acad Sci D (1980) 1.73

2'-O-methyl-5-formylcytidine (f5Cm), a new modified nucleotide at the 'wobble' of two cytoplasmic tRNAs Leu (NAA) from bovine liver. Nucleic Acids Res (1996) 1.71

The crystal structure of UUCG tetraloop. J Mol Biol (2000) 1.68

Primary structure of three tRNAs from brewer's yeast: tRNAPro2, tRNAHis1 and tRNAHis2. Biochimie (1984) 1.67

Ribosomal protein S15 from Escherichia coli modulates its own translation by trapping the ribosome on the mRNA initiation loading site. Proc Natl Acad Sci U S A (1993) 1.67

Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA. J Mol Biol (1997) 1.66