Published in J Mol Biol on July 04, 1997
RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy. J Nanosci Nanotechnol (2005) 1.68
A retroviral RNA kissing complex containing only two G.C base pairs. Proc Natl Acad Sci U S A (2000) 1.50
Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes. Nano Lett (2011) 1.49
Functional analysis of the core human immunodeficiency virus type 1 packaging signal in a permissive cell line. J Virol (1998) 1.38
Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding. RNA (1999) 1.37
Insights on the role of nucleic acid/protein interactions in chaperoned nucleic acid rearrangements of HIV-1 reverse transcription. Proc Natl Acad Sci U S A (2007) 1.37
A crystallographic study of the binding of 13 metal ions to two related RNA duplexes. Nucleic Acids Res (2003) 1.36
Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome. RNA (2000) 1.30
HIV-1 RNA dimerization: It takes two to tango. AIDS Rev (2009) 1.29
Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site. RNA (2000) 1.26
Dimerization and template switching in the 5' untranslated region between various subtypes of human immunodeficiency virus type 1. J Virol (2003) 1.26
In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1. RNA (1999) 1.24
Elements located upstream and downstream of the major splice donor site influence the ability of HIV-2 leader RNA to dimerize in vitro. Biochemistry (2003) 1.11
Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell. Nucleic Acids Res (2006) 1.08
A proton-coupled dynamic conformational switch in the HIV-1 dimerization initiation site kissing complex. Proc Natl Acad Sci U S A (2004) 1.05
Recombination in the 5' leader of murine leukemia virus is accurate and influenced by sequence identity with a strong bias toward the kissing-loop dimerization region. J Virol (1998) 1.01
A new NMR solution structure of the SL1 HIV-1Lai loop-loop dimer. Nucleic Acids Res (2006) 1.01
Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics. Biophys J (2007) 1.00
Solution studies of the dimerization initiation site of HIV-1 genomic RNA. Nucleic Acids Res (1998) 1.00
Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer. Nucleic Acids Res (2003) 0.97
Kissing complex-mediated dimerisation of HIV-1 RNA: coupling extended duplex formation to ribozyme cleavage. Nucleic Acids Res (2003) 0.96
Aminoglycoside binding to the HIV-1 RNA dimerization initiation site: thermodynamics and effect on the kissing-loop to duplex conversion. Nucleic Acids Res (2007) 0.95
Stabilities of HIV-1 DIS type RNA loop-loop interactions in vitro and in vivo. Nucleic Acids Res (2006) 0.95
Deletion mutagenesis downstream of the 5' long terminal repeat of human immunodeficiency virus type 1 is compensated for by point mutations in both the U5 region and gag gene. J Virol (2000) 0.90
Thermodynamic and kinetic analysis of an RNA kissing interaction and its resolution into an extended duplex. Biophys J (2012) 0.88
Engineering cooperative tecto-RNA complexes having programmable stoichiometries. Nucleic Acids Res (2010) 0.87
Hydrophobic amino acids in the human immunodeficiency virus type 1 p2 and nucleocapsid proteins can contribute to the rescue of deleted viral RNA packaging signals. J Virol (2001) 0.86
Mechanical unfolding of two DIS RNA kissing complexes from HIV-1. J Mol Biol (2009) 0.86
A human immunodeficiency virus type 1-infected individual with low viral load harbors a virus variant that exhibits an in vitro RNA dimerization defect. J Virol (2004) 0.86
Synthesis of HIV-1 Psi-site RNA sequences with site specific incorporation of the fluorescent base analog 2-aminopurine. Tetrahedron (2007) 0.84
In vitro dimerization of human immunodeficiency virus type 1 (HIV-1) spliced RNAs. RNA (2007) 0.84
Complementarity-directed RNA dimer-linkage promotes retroviral recombination in vivo. Nucleic Acids Res (2004) 0.84
Molecular Mechanics Investigation of an Adenine-Adenine Non-Canonical Pair Conformational Change. J Chem Theory Comput (2011) 0.82
Mechanism of enhanced mechanical stability of a minimal RNA kissing complex elucidated by nonequilibrium molecular dynamics simulations. Proc Natl Acad Sci U S A (2012) 0.82
A designed RNA selection: establishment of a stable complex between a target and selectant RNA via two coordinated interactions. Nucleic Acids Res (2009) 0.82
Sequence analysis of the dimerization initiation site of concordant and discordant viral variants superinfecting HIV type 1 patients. AIDS Res Hum Retroviruses (2011) 0.82
SHAPE analysis of the 5' end of the Mason-Pfizer monkey virus (MPMV) genomic RNA reveals structural elements required for genome dimerization. RNA (2013) 0.81
Structural basis of genomic RNA (gRNA) dimerization and packaging determinants of mouse mammary tumor virus (MMTV). Retrovirology (2014) 0.80
Ultrastable pRNA hexameric ring gearing hexameric phi29 DNA-packaging motor by revolving without rotating and coiling. Curr Opin Biotechnol (2013) 0.79
Imaging HIV-1 RNA dimerization in cells by multicolor super-resolution and fluctuation microscopies. Nucleic Acids Res (2016) 0.79
Mechanistic Insights into Cofactor-Dependent Coupling of RNA Folding and mRNA Transcription/Translation by a Cobalamin Riboswitch. Cell Rep (2016) 0.77
A combinatorial approach to the repertoire of RNA kissing motifs; towards multiplex detection by switching hairpin aptamers. Nucleic Acids Res (2016) 0.77
Binding characteristics of small molecules that mimic nucleocapsid protein-induced maturation of stem-loop 1 of HIV-1 RNA. Biochemistry (2010) 0.77
Molecular determinants of HIV-1 NCp7 chaperone activity in maturation of the HIV-1 dimerization initiation site. Nucleic Acids Res (2012) 0.77
Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site. Nucleic Acids Res (2010) 0.76
HIV-1 DIS stem loop forms an obligatory bent kissing intermediate in the dimerization pathway. Nucleic Acids Res (2014) 0.76
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol (1990) 10.85
Geometric nomenclature and classification of RNA base pairs. RNA (2001) 9.08
Probing the structure of RNAs in solution. Nucleic Acids Res (1987) 7.62
Crystallographic refinement of yeast aspartic acid transfer RNA. J Mol Biol (1985) 6.33
The complete nucleotide sequence of the ribosomal 16-S RNA from Excherichia coli. Experimental details and cistron heterogeneities. Eur J Biochem (1979) 6.08
A standard reference frame for the description of nucleic acid base-pair geometry. J Mol Biol (2001) 4.29
The topography of the 5' end of 16-S RNA in the presence and absence of ribosomal proteins S4 and S20. Eur J Biochem (1980) 4.22
Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains. J Mol Biol (1993) 4.08
Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro. Proc Natl Acad Sci U S A (1994) 4.07
Hierarchy and dynamics of RNA folding. Annu Rev Biophys Biomol Struct (1997) 3.95
Evidence for tertiary structural RNA-RNA interactions within the protein S4 binding site at the 5'-end of 16S ribosomal RNA of Escherichia coli.+. Nucleic Acids Res (1975) 3.67
Correlation between segmental mobility and the location of antigenic determinants in proteins. Nature (1984) 3.66
Visualizing the logic behind RNA self-assembly. Science (1996) 3.62
The sequence of the ribosomal 16S RNA from Proteus vulgaris. Sequence comparison with E. coli 16S RNA and its use in secondary model building. Nucleic Acids Res (1981) 3.43
The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif. EMBO J (2001) 3.42
A topographical study of the 5'-region of 16 S rna of Escherichia coli in the presence and absence of protein S4. FEBS Lett (1977) 3.31
Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer). J Mol Biol (1995) 3.23
The sequence of Escherichia coli ribosomal 16 S RNA determined by new rapid gel methods. FEBS Lett (1978) 3.19
A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs. J Mol Biol (1998) 3.02
Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. J Biol Chem (1993) 2.95
Dimerization of human immunodeficiency virus (type 1) RNA: stimulation by cations and possible mechanism. Nucleic Acids Res (1991) 2.94
The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure. RNA (1998) 2.94
A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs. RNA (1996) 2.85
Measurements of energetic particle radiation in transit to Mars on the Mars Science Laboratory. Science (2013) 2.83
New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. Chem Biol (1996) 2.81
The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site. Cell (1999) 2.74
The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. 2. Nucleotide sequences of products from partial enzymatic hydrolysis. Biochimie (1972) 2.74
Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA. J Biol Chem (1994) 2.71
Primary sequence of the 16S ribosomal RNA of Escherichia coli. Nucleic Acids Res (1975) 2.67
A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits. Eur J Biochem (1981) 2.60
Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site. Structure (2001) 2.57
The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. III. Further studies. Biochimie (1975) 2.57
A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA. Proc Natl Acad Sci U S A (1996) 2.56
On the wobble GoU and related pairs. RNA (2000) 2.47
Location of ribosomal protein binding sites on 16S ribosomal RNA. Proc Natl Acad Sci U S A (1972) 2.43
Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis. J Mol Biol (1998) 2.42
The role of exportin-t in selective nuclear export of mature tRNAs. EMBO J (1998) 2.40
tRNAs as primer of reverse transcriptases. Biochimie (1995) 2.37
Conserved geometrical base-pairing patterns in RNA. Q Rev Biophys (1998) 2.34
A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis. J Virol (1996) 2.33
Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure. Nucleic Acids Res (1981) 2.32
TectoRNA: modular assembly units for the construction of RNA nano-objects. Nucleic Acids Res (2001) 2.31
Involvement of a GNRA tetraloop in long-range RNA tertiary interactions. J Mol Biol (1994) 2.29
MANIP: an interactive tool for modelling RNA. J Mol Graph Model (1999) 2.24
Dimerization of human immunodeficiency virus type 1 RNA involves sequences located upstream of the splice donor site. Nucleic Acids Res (1994) 2.21
Partial nucleotide sequence of 16S ribosomal RNA from E. coli. Nat New Biol (1972) 2.17
Nucleotide sequences present within the 16S ribosomal RNA of Escherichia coli. Nature (1970) 2.15
Location and characteristics of ribosomal protein binding sites in the 16S RNA of Escherichia coli. Nucleic Acids Res (1975) 2.15
RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles. EMBO J (1997) 2.13
A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses. Curr Biol (1994) 2.13
Spectrophotometric determination of protein concentration in cell extracts containing tRNA's and rRNA's. Anal Biochem (1973) 2.09
Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem. Cell (2000) 2.05
Dimerization of retroviral genomic RNAs: structural and functional implications. Biochimie (1996) 2.03
Recent progress in the determination of the primary sequence of the 16 S RNA of Escherichia coli. FEBS Lett (1977) 2.01
Sequence analysis of the 3'-T1 oligonucleotide of 16S ribosomal RNA from Escherichia coli. FEBS Lett (1974) 1.93
Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules. Biochimie (2002) 1.92
Effect of dimerization on the conformation of the encapsidation Psi domain of Moloney murine leukemia virus RNA. J Mol Biol (1992) 1.89
Water and ion binding around RNA and DNA (C,G) oligomers. J Mol Biol (2000) 1.86
Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site. Nat Struct Biol (2001) 1.86
Computer modeling from solution data of spinach chloroplast and of Xenopus laevis somatic and oocyte 5 S rRNAs. J Mol Biol (1989) 1.84
A three-dimensional perspective on exon binding by a group II self-splicing intron. EMBO J (2000) 1.82
A potential RNA drug target in the hepatitis C virus internal ribosomal entry site. RNA (2000) 1.75
Statistical analysis of atomic contacts at RNA-protein interfaces. J Mol Recognit (2001) 1.73
[Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli]. C R Seances Acad Sci D (1980) 1.73
A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements. Science (1994) 1.71
The crystal structure of UUCG tetraloop. J Mol Biol (2000) 1.68