Published in Nucleic Acids Res on January 01, 2002
Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Mol Cell Biol (2002) 3.10
Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions. EMBO J (2004) 2.08
Dynamic nucleosomes. Chromosome Res (2006) 1.93
Dispersed mutations in histone H3 that affect transcriptional repression and chromatin structure of the CHA1 promoter in Saccharomyces cerevisiae. Eukaryot Cell (2008) 1.31
Histones in crenarchaea. J Bacteriol (2005) 1.15
The Histone Database: a comprehensive resource for histones and histone fold-containing proteins. Proteins (2006) 1.05
Transcription by an archaeal RNA polymerase is slowed but not blocked by an archaeal nucleosome. J Bacteriol (2004) 1.00
Liquid chromatography mass spectrometry profiling of histones. J Chromatogr B Analyt Technol Biomed Life Sci (2007) 1.00
The crystal structure of Aq_328 from the hyperthermophilic bacteria Aquifex aeolicus shows an ancestral histone fold. Proteins (2006) 0.89
Molecular and genetic characterization of a Taf1p domain essential for yeast TFIID assembly. Mol Cell Biol (2004) 0.86
HistoneDB 2.0: a histone database with variants-an integrated resource to explore histones and their variants. Database (Oxford) (2016) 0.84
Computational Epigenetics: the new scientific paradigm. Bioinformation (2010) 0.84
Asymmetry in the burial of hydrophobic residues along the histone chains of eukarya, archaea and a transcription factor. BMC Struct Biol (2005) 0.82
Mutations in the histone fold domain of the TAF12 gene show synthetic lethality with the TAF1 gene lacking the TAF N-terminal domain (TAND) by different mechanisms from those in the SPT15 gene encoding the TATA box-binding protein (TBP). Nucleic Acids Res (2003) 0.81
Unique fluorophores in the dimeric archaeal histones hMfB and hPyA1 reveal the impact of nonnative structure in a monomeric kinetic intermediate. Protein Sci (2007) 0.79
HEMD: an integrated tool of human epigenetic enzymes and chemical modulators for therapeutics. PLoS One (2012) 0.79
Binding of chromium(VI) to histones: implications for chromium(VI)-induced genotoxicity. J Biol Inorg Chem (2005) 0.78
Common evolutionary origin and birth-and-death process in the replication-independent histone H1 isoforms from vertebrate and invertebrate genomes. J Mol Evol (2005) 0.77
A comparison of in vitro nucleosome positioning mapped with chicken, frog and a variety of yeast core histones. J Mol Biol (2013) 0.77
EPITRANS: a database that integrates epigenome and transcriptome data. Mol Cells (2013) 0.76
Mining core histone sequences from public protein databases. Methods Enzymol (2004) 0.75
Evolution of the regular zone of histone H1 in fabaceae plants. J Mol Evol (2004) 0.75
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature (1997) 44.55
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res (2001) 22.33
Spheroid chromatin units (v bodies). Science (1974) 8.15
The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix. Proc Natl Acad Sci U S A (1991) 4.76
The histone fold: a ubiquitous architectural motif utilized in DNA compaction and protein dimerization. Proc Natl Acad Sci U S A (1995) 2.40
Histone variant H2A.Z is required for early mammalian development. Curr Biol (2001) 2.36
Phylogenetic analysis of the core histones H2A, H2B, H3, and H4. Nucleic Acids Res (1994) 1.79
Calf and pea histone IV. 3. Complete amino acid sequence of pea seedling histone IV; comparison with the homologous calf thymus histone. J Biol Chem (1969) 1.66
The TFIID components human TAF(II)140 and Drosophila BIP2 (TAF(II)155) are novel metazoan homologues of yeast TAF(II)47 containing a histone fold and a PHD finger. Mol Cell Biol (2001) 1.41
A histone fold TAF octamer within the yeast TFIID transcriptional coactivator. Nat Struct Biol (2001) 1.33
Evidence for an early prokaryotic origin of histones H2A and H4 prior to the emergence of eukaryotes. Nucleic Acids Res (1998) 1.14
Histone variants: are they functionally heterogeneous? Genome Biol (2001) 1.03
Histones and nucleosomes in Archaea and Eukarya: a comparative analysis. Extremophiles (1998) 1.00
Molecular components of the archaeal nucleosome. Biochimie (2001) 0.99
The histone database: a comprehensive WWW resource for histones and histone fold-containing proteins. Nucleic Acids Res (2000) 0.95
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2007) 22.53
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2008) 21.36
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2006) 18.84
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2009) 12.51
SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science (2005) 12.02
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2010) 10.97
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2011) 8.62
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution. Science (2013) 4.07
High-resolution genome-wide mapping of histone modifications. Nat Biotechnol (2004) 2.69
Melanoma mouse model implicates metabotropic glutamate signaling in melanocytic neoplasia. Nat Genet (2003) 2.67
GALA, a database for genomic sequence alignments and annotations. Genome Res (2003) 2.56
Molecular archeology of L1 insertions in the human genome. Genome Biol (2002) 2.14
Characteristics of users of online personalized genomic risk assessments: implications for physician-patient interactions. Genet Med (2009) 2.07
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res (2007) 2.07
B-ZIP proteins encoded by the Drosophila genome: evaluation of potential dimerization partners. Genome Res (2002) 2.07
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
Ten simple rules for developing a short bioinformatics training course. PLoS Comput Biol (2011) 1.84
A user's guide to the human genome. Nat Genet (2002) 1.83
A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin (2012) 1.82
Putting science over supposition in the arena of personalized genomics. Nat Genet (2008) 1.80
Participation in genetic testing research varies by social group. Public Health Genomics (2010) 1.79
Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis. PLoS One (2007) 1.79
Patients' understanding of and responses to multiplex genetic susceptibility test results. Genet Med (2012) 1.75
Statistical analysis of over-represented words in human promoter sequences. Nucleic Acids Res (2004) 1.69
The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa. Evodevo (2010) 1.48
Identification of human tRNA:m5C methyltransferase catalysing intron-dependent m5C formation in the first position of the anticodon of the pre-tRNA Leu (CAA). Nucleic Acids Res (2006) 1.46
ChloroplastDB: the Chloroplast Genome Database. Nucleic Acids Res (2006) 1.39
Consumers' use of web-based information and their decisions about multiplex genetic susceptibility testing. J Med Internet Res (2010) 1.35
Association between health-service use and multiplex genetic testing. Genet Med (2012) 1.29
Mutant deoxynucleotide carrier is associated with congenital microcephaly. Nat Genet (2002) 1.25
Cloning and characterization of a novel gene, SHPRH, encoding a conserved putative protein with SNF2/helicase and PHD-finger domains from the 6q24 region. Genomics (2003) 1.25
Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) (2011) 1.24
Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes. BMC Biol (2012) 1.23
Cumulative ligand activity of NODAL mutations and modifiers are linked to human heart defects and holoprosencephaly. Mol Genet Metab (2009) 1.21
The Homeodomain Resource: 2003 update. Nucleic Acids Res (2003) 1.18
Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements. Mol Cell Biol (2005) 1.18
Alignments anchored on genomic landmarks can aid in the identification of regulatory elements. Bioinformatics (2005) 1.17
Searching NCBI Databases Using Entrez. Curr Protoc Hum Genet (2011) 1.16
Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi. Evodevo (2010) 1.13
Histone structure and nucleosome stability. Expert Rev Proteomics (2005) 1.11
MLV integration site selection is driven by strong enhancers and active promoters. Nucleic Acids Res (2014) 1.11
The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction. BMC Genomics (2012) 1.09
Structural and functional analyses of disease-causing missense mutations in the forkhead domain of FOXC1. Hum Mol Genet (2003) 1.08
Extreme mitochondrial evolution in the ctenophore Mnemiopsis leidyi: Insight from mtDNA and the nuclear genome. Mitochondrial DNA (2011) 1.08
Evolution of the TGF-β signaling pathway and its potential role in the ctenophore, Mnemiopsis leidyi. PLoS One (2011) 1.07
Identification and characterization of mouse Rab32 by mRNA and protein expression analysis. Biochim Biophys Acta (2003) 1.07
Effects of HMGN variants on the cellular transcription profile. Nucleic Acids Res (2011) 1.05
The Histone Database: a comprehensive resource for histones and histone fold-containing proteins. Proteins (2006) 1.05
The Histone Database: an integrated resource for histones and histone fold-containing proteins. Database (Oxford) (2011) 1.04
Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. BMC Genomics (2008) 1.02
Multiple independent evolutionary solutions to core histone gene regulation. Genome Biol (2006) 1.00
miRNEST database: an integrative approach in microRNA search and annotation. Nucleic Acids Res (2011) 0.99
A single nucleotide polymorphism in the 3'UTR of the SNCA gene encoding alpha-synuclein is a new potential susceptibility locus for Parkinson disease. Neurosci Lett (2009) 0.98
Genome sequence of the Mycobacterium colombiense type strain, CECT 3035. J Bacteriol (2011) 0.98
Repetitive DNA elements, nucleosome binding and human gene expression. Gene (2009) 0.96
MicroRNAs and essential components of the microRNA processing machinery are not encoded in the genome of the ctenophore Mnemiopsis leidyi. BMC Genomics (2012) 0.96
HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells. Mol Cell Biol (2013) 0.95
Origin and evolution of the chicken leukocyte receptor complex. Proc Natl Acad Sci U S A (2005) 0.95
Rootstock-regulated gene expression patterns associated with fire blight resistance in apple. BMC Genomics (2012) 0.94
Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystem. PLoS One (2013) 0.94
Identifying related L1 retrotransposons by analyzing 3' transduced sequences. Genome Biol (2003) 0.92
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site. Nucleic Acids Res (2008) 0.92
The ENCODEdb portal: simplified access to ENCODE Consortium data. Genome Res (2007) 0.92
Retroposed copies of the HMG genes: a window to genome dynamics. Genome Res (2003) 0.90
Hox, Wnt, and the evolution of the primary body axis: insights from the early-divergent phyla. Biol Direct (2007) 0.89
Expression patterns of protein kinases correlate with gene architecture and evolutionary rates. PLoS One (2008) 0.88
Physical and transcript map of the hereditary prostate cancer region at xq27. Genomics (2002) 0.88
Common file formats. Curr Protoc Bioinformatics (2007) 0.87
The diversification of the LIM superclass at the base of the metazoa increased subcellular complexity and promoted multicellular specialization. PLoS One (2012) 0.86
GeneLink: a database to facilitate genetic studies of complex traits. BMC Genomics (2004) 0.86
Searching Online Mendelian Inheritance in Man (OMIM) for information on genetic loci involved in human disease. Curr Protoc Hum Genet (2012) 0.86
Structural analysis of disease-causing mutations in the P-subfamily of forkhead transcription factors. Proteins (2004) 0.86
The importance of biological databases in biological discovery. Curr Protoc Bioinformatics (2011) 0.85
Identification of cis-regulatory elements in gene co-expression networks using A-GLAM. Methods Mol Biol (2009) 0.85
The importance of biological databases in biological discovery. Curr Protoc Bioinformatics (2009) 0.85
Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome. Nucleic Acids Res (2010) 0.85
Searching NCBI databases using Entrez. Curr Protoc Bioinformatics (2011) 0.85
The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. Database (Oxford) (2009) 0.85
Characterization of sequence variability in nucleosome core histone folds. Proteins (2003) 0.84
The importance of biological databases in biological discovery. Curr Protoc Bioinformatics (2006) 0.84
Searching the NCBI databases using Entrez. Curr Protoc Hum Genet (2006) 0.83
Gaucher mutation N188S is associated with myoclonic epilepsy. Hum Mutat (2005) 0.82
Identification of six novel genes by experimental validation of GeneMachine predicted genes. Gene (2002) 0.81
Searching the NCBI databases using Entrez. Curr Protoc Bioinformatics (2006) 0.81
The DNA-binding region of RAG 1 is not a homeodomain. Genome Biol (2002) 0.80
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements. BMC Bioinformatics (2006) 0.80
Searching Online Mendelian Inheritance in Man (OMIM) for information on genetic loci involved in human disease. Curr Protoc Bioinformatics (2009) 0.80
In silico identification and characterization of the ion transport specificity for P-type ATPases in the Mycobacterium tuberculosis complex. BMC Struct Biol (2012) 0.79
Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae. PLoS One (2011) 0.79
miRNEST 2.0: a database of plant and animal microRNAs. Nucleic Acids Res (2013) 0.78
Plant pathogen culture collections: it takes a village to preserve these resources vital to the advancement of agricultural security and plant pathology. Phytopathology (2006) 0.76
Promoter analysis: gene regulatory motif identification with A-GLAM. Methods Mol Biol (2009) 0.75
Mining core histone sequences from public protein databases. Methods Enzymol (2004) 0.75
Differences in local genomic context of bound and unbound motifs. Gene (2012) 0.75