Published in BMC Bioinformatics on September 08, 2006
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The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction. BMC Genomics (2012) 1.09
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Repetitive DNA elements, nucleosome binding and human gene expression. Gene (2009) 0.96
HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells. Mol Cell Biol (2013) 0.95
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Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystem. PLoS One (2013) 0.94
Identifying related L1 retrotransposons by analyzing 3' transduced sequences. Genome Biol (2003) 0.92
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site. Nucleic Acids Res (2008) 0.92
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Expression patterns of protein kinases correlate with gene architecture and evolutionary rates. PLoS One (2008) 0.88
Prediction of transposable element derived enhancers using chromatin modification profiles. PLoS One (2011) 0.88
Adding sequence context to a Markov background model improves the identification of regulatory elements. Bioinformatics (2006) 0.87
Benchmarking computational tools for polymorphic transposable element detection. Brief Bioinform (2016) 0.85
A c-Myc regulatory subnetwork from human transposable element sequences. Mol Biosyst (2009) 0.85
Identification of cis-regulatory elements in gene co-expression networks using A-GLAM. Methods Mol Biol (2009) 0.85
Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome. Nucleic Acids Res (2010) 0.85
New finite-size correction for local alignment score distributions. BMC Res Notes (2012) 0.84
Characterization of sequence variability in nucleosome core histone folds. Proteins (2003) 0.84
The correlation error and finite-size correction in an ungapped sequence alignment. Bioinformatics (2002) 0.83
Virulence and immune response induced by Mycobacterium avium complex strains in a model of progressive pulmonary tuberculosis and subcutaneous infection in BALB/c mice. Infect Immun (2013) 0.83
Effect of the transposable element environment of human genes on gene length and expression. Genome Biol Evol (2011) 0.82
Coalescent: an open-source and scalable framework for exact calculations in coalescent theory. BMC Bioinformatics (2012) 0.82
Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae. PLoS One (2011) 0.79
In silico identification and characterization of the ion transport specificity for P-type ATPases in the Mycobacterium tuberculosis complex. BMC Struct Biol (2012) 0.79
Objective method for estimating asymptotic parameters, with an application to sequence alignment. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.78
Polymorphism of the Pv200L fragment of merozoite surface protein-1 of Plasmodium vivax in clinical isolates from the Pacific coast of Colombia. Am J Trop Med Hyg (2011) 0.77
MsDetector: toward a standard computational tool for DNA microsatellites detection. Nucleic Acids Res (2012) 0.77
The practical evaluation of DNA barcode efficacy. Methods Mol Biol (2012) 0.76
NEXT-peak: a normal-exponential two-peak model for peak-calling in ChIP-seq data. BMC Genomics (2013) 0.76
Transcriptional regulation of N-acetylglutamate synthase. PLoS One (2012) 0.76
Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera. PLoS One (2013) 0.76
Mining core histone sequences from public protein databases. Methods Enzymol (2004) 0.75
Domain analysis of symbionts and hosts (DASH) in a genome-wide survey of pathogenic human viruses. BMC Res Notes (2013) 0.75
Improving Retrieval Efficacy of Homology Searches Using the False Discovery Rate. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.75
Promoter analysis: gene regulatory motif identification with A-GLAM. Methods Mol Biol (2009) 0.75
Differences in local genomic context of bound and unbound motifs. Gene (2012) 0.75
This special issue includes a selection of papers presented at the 2nd IEEE International Conference. Introduction. Int J Bioinform Res Appl (2014) 0.75
6 Combined influence of linker DNA and histone tails on nucleosome dynamics as revealed by microsecond molecular dynamics simulations. J Biomol Struct Dyn (2015) 0.75